Experiment set2IT048 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Vancomycin Hydrochloride Hydrate 0.12 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3792 +2.2 15.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_6057 +2.1 7.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_445 +2.1 13.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3659 +2.1 9.8 Protein fixF compare
Pf6N2E2_3791 +2.0 14.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_6058 +2.0 12.5 FIG139976: hypothetical protein compare
Pf6N2E2_2973 +1.9 10.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2213 +1.8 8.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) conserved
Pf6N2E2_3661 +1.8 9.7 hypothetical protein compare
Pf6N2E2_3663 +1.7 11.5 Glycosyl transferase compare
Pf6N2E2_5219 +1.7 12.1 FIG140336: TPR domain protein compare
Pf6N2E2_5207 +1.6 4.6 hypothetical protein compare
Pf6N2E2_5987 +1.6 10.8 OmpA family protein compare
Pf6N2E2_3835 +1.5 9.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_74 +1.5 5.6 DedD protein compare
Pf6N2E2_3885 +1.5 6.6 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5720 +1.4 11.5 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3941 +1.3 4.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5150 +1.3 6.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3899 +1.3 8.6 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2022 +1.2 6.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5739 +1.2 1.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2519 +1.2 2.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_2344 +1.1 7.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) conserved
Pf6N2E2_1032 +1.1 1.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1083 +1.1 1.4 hypothetical protein compare
Pf6N2E2_3283 +1.1 4.7 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5525 +1.1 7.7 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases conserved
Pf6N2E2_3429 +1.0 2.2 hypothetical protein compare
Pf6N2E2_37 +1.0 3.8 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_773 +1.0 5.4 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_3833 +1.0 4.6 hypothetical protein compare
Pf6N2E2_1981 +1.0 3.9 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2477 +1.0 1.6 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_6059 +1.0 4.1 FIG008443: hypothetical protein compare
Pf6N2E2_331 +1.0 3.4 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_2756 +1.0 6.0 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3271 +1.0 3.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1095 +0.9 1.8 Opine oxidase subunit C compare
Pf6N2E2_5545 +0.9 4.3 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_5182 +0.9 6.4 Paraquat-inducible protein A compare
Pf6N2E2_5181 +0.9 6.7 Paraquat-inducible protein A compare
Pf6N2E2_4418 +0.9 1.3 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5986 +0.9 1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3041 +0.9 5.7 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf6N2E2_1347 +0.9 3.6 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_3658 +0.9 4.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5956 +0.9 4.5 FIG004453: protein YceG like compare
Pf6N2E2_5780 +0.9 5.6 Periplasmic protease compare
Pf6N2E2_5816 +0.9 1.4 Smr domain protein compare
Pf6N2E2_2420 +0.9 2.1 hypothetical protein compare
Pf6N2E2_2281 +0.9 2.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2586 +0.9 2.3 Hpt domain protein compare
Pf6N2E2_902 +0.8 1.1 hypothetical protein compare
Pf6N2E2_4579 +0.8 1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_3475 +0.8 1.8 hypothetical protein compare
Pf6N2E2_5183 +0.8 6.6 Paraquat-inducible protein B compare
Pf6N2E2_3794 +0.8 3.9 Proline iminopeptidase (EC 3.4.11.5) compare
Pf6N2E2_4581 +0.8 4.8 FIG015547: peptidase, M16 family compare
Pf6N2E2_5761 +0.8 2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_687 +0.8 2.7 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_5188 +0.8 3.6 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2211 +0.8 5.0 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_5160 +0.8 2.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5749 +0.8 1.7 hypothetical protein compare
Pf6N2E2_1506 +0.8 1.6 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_3942 +0.8 4.8 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5666 +0.8 4.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3305 +0.8 1.8 hypothetical protein compare
Pf6N2E2_3085 +0.8 2.7 FIG00954614: hypothetical protein compare
Pf6N2E2_4464 +0.7 2.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_3095 +0.7 1.3 hypothetical protein compare
Pf6N2E2_3362 +0.7 2.6 hypothetical protein compare
Pf6N2E2_4453 +0.7 6.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4276 +0.7 4.4 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1463 +0.7 2.3 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_2681 +0.7 2.0 3-phosphoglycerate kinase compare
Pf6N2E2_924 +0.7 1.9 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_942 +0.7 1.0 Mll6465 protein compare
Pf6N2E2_3027 +0.7 1.5 Baseplate assembly protein V compare
Pf6N2E2_5494 +0.7 2.6 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5546 +0.7 4.0 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_2390 +0.7 2.0 FIG00959101: hypothetical protein compare
Pf6N2E2_1499 +0.7 1.2 ABC transporter amino acid-binding protein compare
Pf6N2E2_3886 +0.7 3.6 ADP compounds hydrolase NudE (EC 3.6.1.-) compare
Pf6N2E2_3834 +0.6 1.6 Lipoprotein NlpD compare
Pf6N2E2_1099 +0.6 1.5 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_6087 +0.6 1.6 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4233 +0.6 5.6 sulfatase domain protein, putative compare
Pf6N2E2_2636 +0.6 1.4 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1128 +0.6 1.8 Two-component response regulator compare
Pf6N2E2_5226 +0.6 1.1 FIG00955589: hypothetical protein compare
Pf6N2E2_482 +0.6 1.8 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_423 +0.6 1.2 Putative phosphatase YfbT compare
Pf6N2E2_4063 +0.6 2.4 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_4580 +0.6 3.6 FIG015287: Zinc protease compare
Pf6N2E2_1176 +0.6 2.4 Mll2356 protein compare
Pf6N2E2_3179 +0.6 1.6 FIG021952: putative membrane protein compare
Pf6N2E2_4025 +0.6 1.6 hypothetical protein compare
Pf6N2E2_4364 +0.6 2.6 Protein YicC compare
Pf6N2E2_3611 +0.6 0.9 HflC protein compare
Pf6N2E2_865 +0.6 1.9 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2858 +0.6 2.4 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_4556 +0.6 2.4 FIG00953078: hypothetical protein compare
Pf6N2E2_443 +0.6 1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_813 +0.6 1.8 Response regulator compare
Pf6N2E2_956 +0.6 1.6 FIG01210404: hypothetical protein compare
Pf6N2E2_775 +0.6 1.9 FIG00955061: hypothetical protein compare
Pf6N2E2_2503 +0.6 1.5 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_349 +0.6 2.0 hypothetical protein compare
Pf6N2E2_1722 +0.6 1.9 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) compare
Pf6N2E2_1859 +0.6 2.0 hypothetical protein compare
Pf6N2E2_5425 +0.6 1.0 hypothetical protein compare
Pf6N2E2_5723 +0.6 4.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2362 +0.6 2.5 Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components) compare
Pf6N2E2_3664 +0.6 3.1 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1896 +0.6 1.4 hypothetical protein compare
Pf6N2E2_714 +0.6 2.5 NnrS protein involved in response to NO compare
Pf6N2E2_4148 +0.6 3.3 Glutamate-aspartate carrier protein compare
Pf6N2E2_662 +0.6 2.3 Valyl-tRNA synthetase compare
Pf6N2E2_3199 +0.5 2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5057 +0.5 1.5 hypothetical protein compare
Pf6N2E2_734 +0.5 1.8 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1525 +0.5 1.3 Universal stress protein family 5 compare
Pf6N2E2_64 +0.5 1.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_6085 +0.5 1.5 Aha1 domain superfamily compare
Pf6N2E2_2922 +0.5 2.1 hypothetical protein compare
Pf6N2E2_2306 +0.5 1.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4317 +0.5 2.4 FIG00964469: hypothetical protein compare
Pf6N2E2_4624 +0.5 0.9 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_2080 +0.5 0.9 hypothetical protein compare
Pf6N2E2_5030 +0.5 3.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_841 +0.5 1.3 hypothetical protein compare
Pf6N2E2_92 +0.5 2.1 hypothetical protein compare
Pf6N2E2_2633 +0.5 2.0 Nitroreductase family protein compare
Pf6N2E2_204 +0.5 0.6 hypothetical protein compare
Pf6N2E2_4413 +0.5 2.8 FIG004064: hypothetical protein compare
Pf6N2E2_2121 +0.5 1.6 hypothetical protein compare
Pf6N2E2_4059 +0.5 1.0 DNA-binding protein HU-alpha compare
Pf6N2E2_3258 +0.5 2.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2708 +0.5 2.3 Lactam utilization protein LamB compare
Pf6N2E2_1462 +0.5 2.0 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_1839 +0.5 1.6 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2017 +0.5 1.8 DNA-binding protein compare
Pf6N2E2_3122 +0.5 1.2 Chemotaxis signal transduction protein compare
Pf6N2E2_5531 +0.5 2.0 hypothetical protein compare
Pf6N2E2_3737 +0.5 1.6 General secretion pathway protein M compare
Pf6N2E2_4459 +0.5 1.4 Transcriptional regulator, GntR family compare
Pf6N2E2_6070 +0.5 1.6 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_1337 +0.5 1.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_629 +0.5 2.1 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_88 +0.5 1.1 hypothetical protein compare
Pf6N2E2_2500 +0.5 2.5 Putative membrane protein compare
Pf6N2E2_2549 +0.5 1.1 hypothetical protein compare
Pf6N2E2_1779 +0.5 1.3 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_1502 +0.5 0.8 Two-component system regulatory protein compare
Pf6N2E2_4963 +0.5 1.1 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_4427 +0.5 1.6 FIG00954215: hypothetical protein compare
Pf6N2E2_4803 +0.5 0.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1207 +0.5 2.0 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_3320 +0.5 2.3 hypothetical protein compare
Pf6N2E2_2133 +0.5 2.3 Putative sulfate permease compare
Pf6N2E2_5848 +0.5 2.0 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf6N2E2_1098 +0.5 2.4 Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein compare
Pf6N2E2_1802 +0.5 1.8 polysaccharide deacetylase compare
Pf6N2E2_3274 +0.5 2.7 Manganese superoxide dismutase (EC 1.15.1.1) compare
Pf6N2E2_3028 +0.5 2.2 FIG00959937: hypothetical protein compare
Pf6N2E2_5455 +0.5 1.4 hypothetical protein compare
Pf6N2E2_1860 +0.5 1.6 Ferredoxin, 2Fe-2S compare
Pf6N2E2_3793 +0.5 1.1 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_3003 +0.5 1.2 Bacteriophage protein GP46 compare
Pf6N2E2_990 +0.5 2.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_1761 +0.5 1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_1015 +0.5 1.8 Inositol transport system sugar-binding protein compare
Pf6N2E2_20 +0.5 2.8 pyoverdine-specific efflux macA-like protein compare
Pf6N2E2_6060 +0.5 1.7 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_4415 +0.5 1.0 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_193 +0.5 1.1 hypothetical protein compare
Pf6N2E2_54 +0.5 1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2124 +0.5 1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5716 +0.5 2.7 Cytochrome c-type biogenesis protein ResA compare
Pf6N2E2_6046 +0.5 1.4 hypothetical protein compare
Pf6N2E2_2855 +0.5 2.3 DGPFAETKE compare
Pf6N2E2_1435 +0.5 1.3 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_5451 +0.5 2.2 Adhesin major subunit pilin compare
Pf6N2E2_1385 +0.4 0.9 FIG00956261: hypothetical protein compare
Pf6N2E2_6077 +0.4 2.5 Cysteine desulfurase (EC 2.8.1.7) compare
Pf6N2E2_1514 +0.4 1.3 lipoprotein OprI, putative compare
Pf6N2E2_2790 +0.4 1.0 Helix-turn-helix motif compare
Pf6N2E2_1834 +0.4 1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1670 +0.4 0.9 conserved membrane protein compare
Pf6N2E2_716 +0.4 2.3 Nitric oxide-dependent regulator DnrN or NorA compare
Pf6N2E2_1040 +0.4 0.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1033 +0.4 1.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_2296 +0.4 1.3 FIG00954767: hypothetical protein compare
Pf6N2E2_2637 +0.4 3.2 Metal-dependent phosphohydrolase, HD subdomain compare
Pf6N2E2_2262 +0.4 1.4 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_572 +0.4 0.8 hypothetical protein compare
Pf6N2E2_1398 +0.4 1.3 Rhodanese-related sulfurtransferase compare
Pf6N2E2_2501 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Vancomycin Hydrochloride Hydrate across organisms