Experiment set2IT048 for Ralstonia sp. UNC404CL21Col

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS15775 -8.0 -5.5 4-carboxymuconolactone decarboxylase compare
ABZR87_RS15790 -7.5 -5.2 3-oxoadipyl-CoA thiolase compare
ABZR87_RS15785 -7.2 -7.0 3-carboxy-cis,cis-muconate cycloisomerase conserved
ABZR87_RS09450 -6.5 -7.8 prephenate dehydratase compare
ABZR87_RS02155 -6.5 -7.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS02565 -6.5 -4.5 glutamate synthase subunit beta compare
ABZR87_RS09465 -6.5 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS15800 -6.5 -11.6 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS14535 -6.4 -4.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS16170 -6.4 -6.2 argininosuccinate lyase compare
ABZR87_RS06770 -6.3 -9.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS02640 -6.3 -19.4 diaminopimelate decarboxylase compare
ABZR87_RS08630 -6.3 -14.5 dihydroorotase compare
ABZR87_RS02570 -6.2 -22.1 glutamate synthase-related protein compare
ABZR87_RS13250 -6.1 -5.5 phosphoserine phosphatase SerB compare
ABZR87_RS12085 -6.0 -14.6 protocatechuate 3,4-dioxygenase subunit beta conserved
ABZR87_RS14540 -6.0 -9.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02160 -6.0 -7.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05200 -6.0 -19.5 homoserine O-acetyltransferase compare
ABZR87_RS14530 -6.0 -5.8 3-isopropylmalate dehydrogenase compare
ABZR87_RS09445 -6.0 -15.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS14500 -5.9 -14.3 tryptophan synthase subunit beta compare
ABZR87_RS02590 -5.8 -14.3 3-dehydroquinate synthase compare
ABZR87_RS15780 -5.8 -9.6 3-oxoadipate enol-lactonase conserved
ABZR87_RS07360 -5.8 -15.4 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS00200 -5.7 -5.6 phosphoadenylyl-sulfate reductase compare
ABZR87_RS12080 -5.7 -8.0 pca operon transcription factor PcaQ compare
ABZR87_RS01110 -5.6 -12.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02145 -5.6 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS00210 -5.6 -7.6 nitrite/sulfite reductase compare
ABZR87_RS14490 -5.5 -9.2 tryptophan synthase subunit alpha compare
ABZR87_RS00190 -5.5 -11.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS02595 -5.5 -11.6 shikimate kinase compare
ABZR87_RS08625 -5.4 -3.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS07380 -5.4 -13.6 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14505 -5.4 -7.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS01645 -5.3 -7.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS13790 -5.2 -12.1 chorismate synthase compare
ABZR87_RS09935 -5.1 -3.6 amino acid aminotransferase compare
ABZR87_RS04865 -5.1 -3.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS12090 -5.0 -9.3 protocatechuate 3,4-dioxygenase subunit alpha compare
ABZR87_RS15795 -5.0 -7.3 CoA transferase subunit B compare
ABZR87_RS05590 -4.9 -4.7 orotate phosphoribosyltransferase compare
ABZR87_RS02140 -4.8 -20.3 anthranilate synthase component I compare
ABZR87_RS22970 -4.6 -12.1 cystathionine gamma-synthase family protein compare
ABZR87_RS00835 -4.6 -7.0 argininosuccinate synthase compare
ABZR87_RS05170 -4.6 -3.2 acetylglutamate kinase compare
ABZR87_RS00185 -4.6 -4.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS14950 -4.4 -4.2 acetolactate synthase small subunit compare
ABZR87_RS01810 -4.2 -5.7 glutamate 5-kinase compare
ABZR87_RS11440 -4.1 -8.4 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09515 -4.0 -2.7 cysteine synthase CysM compare
ABZR87_RS05025 -3.9 -2.7 rod shape-determining protein MreC compare
ABZR87_RS07625 -3.9 -3.7 Holliday junction branch migration protein RuvA compare
ABZR87_RS00220 -3.8 -9.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00205 -3.8 -4.0 DUF934 domain-containing protein compare
ABZR87_RS10610 -3.6 -3.4 inositol monophosphatase family protein compare
ABZR87_RS05100 -3.6 -9.1 RNA polymerase-binding protein DksA compare
ABZR87_RS01605 -3.5 -9.2 shikimate dehydrogenase compare
ABZR87_RS12790 -3.4 -7.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00285 -3.4 -2.3 acetylornithine transaminase compare
ABZR87_RS14955 -3.2 -5.4 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00195 -3.2 -3.2 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS04785 -3.2 -12.1 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS05010 -3.1 -4.3 rod shape-determining protein RodA compare
ABZR87_RS07050 -3.1 -2.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS09460 -3.1 -5.3 prephenate dehydrogenase compare
ABZR87_RS00325 -3.0 -3.7 peptidylprolyl isomerase compare
ABZR87_RS06705 -2.9 -15.3 glutamate--cysteine ligase compare
ABZR87_RS16180 -2.8 -3.3 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS01225 -2.8 -3.0 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS10820 -2.8 -8.2 LysR substrate-binding domain-containing protein compare
ABZR87_RS05015 -2.8 -6.1 penicillin-binding protein 2 compare
ABZR87_RS07635 -2.7 -3.2 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS16185 -2.7 -3.2 dCTP deaminase compare
ABZR87_RS11070 -2.7 -7.8 nitrogen regulation protein NR(I) compare
ABZR87_RS11065 -2.6 -8.1 nitrogen regulation protein NR(II) compare
ABZR87_RS08695 -2.6 -13.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00360 -2.6 -1.8 acyl-CoA desaturase compare
ABZR87_RS10240 -2.6 -3.4 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS10785 -2.4 -6.8 exodeoxyribonuclease V subunit beta compare
ABZR87_RS06495 -2.4 -3.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS13300 -2.4 -9.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS08655 -2.4 -7.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS13175 -2.3 -2.9 tRNA-Leu compare
ABZR87_RS12795 -2.3 -7.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS10780 -2.3 -5.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS02480 -2.3 -2.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS05065 -2.3 -5.3 tyrosine recombinase XerC compare
ABZR87_RS02575 -2.3 -7.2 transposase compare
ABZR87_RS00435 -2.2 -9.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS08645 -2.2 -1.7 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS07620 -2.1 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS14375 -2.0 -3.2 fumarate hydratase compare
ABZR87_RS11925 -1.9 -10.9 phosphoenolpyruvate synthase compare
ABZR87_RS01425 -1.9 -4.0 ferric iron uptake transcriptional regulator compare
ABZR87_RS11125 -1.9 -5.9 cell division protein ZapE compare
ABZR87_RS09635 -1.9 -2.7 ribosome small subunit-dependent GTPase A compare
ABZR87_RS11815 -1.8 -7.4 [protein-PII] uridylyltransferase compare
ABZR87_RS00215 -1.8 -3.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10120 -1.8 -1.9 YceD family protein compare
ABZR87_RS07705 -1.8 -3.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS12785 -1.8 -7.2 endopeptidase La compare
ABZR87_RS06710 -1.8 -12.2 glutathione synthase compare
ABZR87_RS11015 -1.7 -5.0 amino-acid N-acetyltransferase compare
ABZR87_RS01270 -1.6 -7.2 ATP-dependent DNA helicase RecG compare
ABZR87_RS09500 -1.6 -4.0 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS01565 -1.6 -8.8 NADP-dependent malic enzyme compare
ABZR87_RS15705 -1.5 -3.2 UvrD-helicase domain-containing protein compare
ABZR87_RS11790 -1.5 -3.6 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS11940 -1.5 -3.1 SsrA-binding protein SmpB compare
ABZR87_RS15440 -1.4 -2.9 ribonuclease G compare
ABZR87_RS08700 -1.4 -7.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06645 -1.4 -1.6 TlpA disulfide reductase family protein compare
ABZR87_RS14495 -1.4 -2.4 site-specific DNA-methyltransferase compare
ABZR87_RS03075 -1.4 -7.0 AGE family epimerase/isomerase compare
ABZR87_RS16960 -1.4 -4.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS03930 -1.3 -2.4 glycine cleavage system protein GcvH compare
ABZR87_RS10620 -1.3 -1.6 serine O-acetyltransferase compare
ABZR87_RS04725 -1.3 -1.4 universal stress protein compare
ABZR87_RS08040 -1.3 -5.1 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS00275 -1.3 -6.4 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS06715 -1.3 -2.3 PTS sugar transporter subunit IIA compare
ABZR87_RS08750 -1.2 -4.4 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS05060 -1.2 -4.0 DUF484 family protein compare
ABZR87_RS01430 -1.2 -10.0 LysR family transcriptional regulator compare
ABZR87_RS09895 -1.2 -2.0 DUF1841 family protein compare
ABZR87_RS09505 -1.2 -5.6 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS18105 -1.2 -1.3 hypothetical protein compare
ABZR87_RS07965 -1.2 -5.1 recombinase RecA compare
ABZR87_RS14415 -1.1 -1.3 hemin uptake protein HemP compare
ABZR87_RS02150 -1.1 -1.4 lysozyme inhibitor LprI family protein compare
ABZR87_RS13495 -1.1 -3.9 exodeoxyribonuclease III compare
ABZR87_RS10085 -1.1 -2.1 Rne/Rng family ribonuclease compare
ABZR87_RS11770 -1.1 -5.0 succinyldiaminopimelate transaminase compare
ABZR87_RS11760 -1.1 -1.2 membrane protein compare
ABZR87_RS10195 -1.1 -3.2 signal peptidase I compare
ABZR87_RS08670 -1.1 -6.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS21285 -1.1 -2.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06030 -1.1 -0.9 AraC family transcriptional regulator compare
ABZR87_RS14380 -1.0 -4.5 glutamate racemase compare
ABZR87_RS22300 -1.0 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS10400 -1.0 -1.9 hypothetical protein compare
ABZR87_RS09615 -1.0 -1.6 50S ribosomal protein L19 compare
ABZR87_RS07060 -1.0 -7.1 RNA polymerase factor sigma-54 compare
ABZR87_RS20440 -1.0 -1.2 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS05580 -0.9 -2.6 diaminopimelate epimerase compare
ABZR87_RS13290 -0.9 -2.8 3-ketoacyl-ACP reductase compare
ABZR87_RS05305 -0.9 -5.5 TetR family transcriptional regulator compare
ABZR87_RS11420 -0.9 -1.6 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS08660 -0.9 -3.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS04860 -0.9 -2.5 phage holin family protein compare
ABZR87_RS08795 -0.9 -3.4 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS08650 -0.9 -5.6 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS01885 -0.8 -2.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS11435 -0.8 -1.8 Mth938-like domain-containing protein compare
ABZR87_RS16225 -0.8 -0.9 twin-arginine translocation signal domain-containing protein compare
ABZR87_RS14890 -0.8 -1.1 preprotein translocase subunit SecG compare
ABZR87_RS07665 -0.8 -4.8 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS15405 -0.8 -2.0 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS21795 -0.8 -3.0 NUDIX domain-containing protein compare
ABZR87_RS18335 -0.8 -0.9 GntR family transcriptional regulator compare
ABZR87_RS10800 -0.8 -1.8 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS01675 -0.8 -1.4 carbohydrate kinase family protein compare
ABZR87_RS22690 -0.8 -1.9 XRE family transcriptional regulator compare
ABZR87_RS22325 -0.8 -2.0 H-NS histone family protein compare
ABZR87_RS22520 -0.8 -0.7 ABATE domain-containing protein compare
ABZR87_RS05205 -0.7 -2.9 methionine biosynthesis protein MetW compare
ABZR87_RS01420 -0.7 -1.1 outer membrane protein assembly factor BamE compare
ABZR87_RS13350 -0.7 -3.0 potassium transporter Kup compare
ABZR87_RS07735 -0.7 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS00745 -0.7 -1.1 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS01980 -0.7 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS09820 -0.7 -2.1 RidA family protein compare
ABZR87_RS13475 -0.7 -3.6 PAS domain S-box protein compare
ABZR87_RS10395 -0.7 -3.8 single-stranded-DNA-specific exonuclease RecJ compare
ABZR87_RS11375 -0.7 -4.1 inorganic phosphate transporter compare
ABZR87_RS00795 -0.7 -1.8 site-specific tyrosine recombinase XerD compare
ABZR87_RS13705 -0.7 -0.8 integration host factor subunit alpha compare
ABZR87_RS06385 -0.7 -5.1 CHASE3 domain-containing protein compare
ABZR87_RS21470 -0.7 -1.7 P-II family nitrogen regulator compare
ABZR87_RS00230 -0.7 -1.8 NAD(P)-dependent oxidoreductase compare
ABZR87_RS23470 -0.7 -1.7 malonate decarboxylase holo-ACP synthase compare
ABZR87_RS16270 -0.7 -1.6 cold-shock protein compare
ABZR87_RS15680 -0.7 -4.0 DNA polymerase I compare
ABZR87_RS11245 -0.7 -3.3 translational GTPase TypA compare
ABZR87_RS00830 -0.7 -1.2 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS11585 -0.6 -2.0 gamma-glutamylcyclotransferase compare
ABZR87_RS05145 -0.6 -1.1 copper chaperone PCu(A)C compare
ABZR87_RS16845 -0.6 -0.8 hypothetical protein compare
ABZR87_RS22340 -0.6 -1.2 hypothetical protein compare
ABZR87_RS09415 -0.6 -3.4 HAD-IA family hydrolase compare
ABZR87_RS16055 -0.6 -3.0 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS08710 -0.6 -5.6 sugar transferase compare
ABZR87_RS05350 -0.6 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS14910 -0.6 -1.2 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS15645 -0.6 -1.1 exodeoxyribonuclease VII small subunit compare
ABZR87_RS07655 -0.6 -4.1 FAD-dependent oxidoreductase compare
ABZR87_RS06845 -0.6 -3.5 heme o synthase compare
ABZR87_RS08725 -0.6 -5.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Protocatechuic Acid in Ralstonia sp. UNC404CL21Col

For carbon source Protocatechuic Acid across organisms