Experiment set2IT047 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Sodium nitrite 50 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS10065 -3.9 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS06755 -3.8 -17.6 LTA synthase family protein compare
LRK54_RS06885 -3.6 -4.3 rhodanese-like domain-containing protein compare
LRK54_RS02895 -3.5 -4.8 rhomboid family intramembrane serine protease compare
LRK54_RS01580 -3.5 -8.1 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS04350 -3.5 -2.4 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS14695 -3.5 -11.2 rhomboid family intramembrane serine protease compare
LRK54_RS06685 -3.5 -10.7 TolC family outer membrane protein compare
LRK54_RS07310 -3.5 -12.2 pteridine reductase compare
LRK54_RS12190 -3.4 -7.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS04585 -3.4 -3.3 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS03895 -3.4 -14.3 lipopolysaccharide biosynthesis protein compare
LRK54_RS00345 -3.3 -4.5 TraB/GumN family protein compare
LRK54_RS02440 -3.3 -2.3 RNA polymerase-binding protein DksA compare
LRK54_RS00620 -3.3 -6.7 FtsH protease activity modulator HflK compare
LRK54_RS03710 -3.2 -7.8 tetratricopeptide repeat protein compare
LRK54_RS14590 -3.2 -5.3 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS16865 -3.2 -8.5 protein phosphatase 2C domain-containing protein compare
LRK54_RS00440 -3.2 -6.1 high frequency lysogenization protein HflD compare
LRK54_RS10355 -3.2 -2.2 threonine synthase compare
LRK54_RS16660 -3.2 -6.4 VTT domain-containing protein compare
LRK54_RS14825 -3.2 -4.3 protease HtpX compare
LRK54_RS01585 -3.2 -7.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS11995 -3.2 -15.1 tRNA-Gly compare
LRK54_RS06470 -3.2 -10.3 carboxy terminal-processing peptidase compare
LRK54_RS12855 -3.1 -5.2 PTS fructose transporter subunit IIA compare
LRK54_RS11560 -3.1 -5.5 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS17215 -3.1 -3.7 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS12295 -3.1 -2.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS03110 -3.1 -8.9 nucleotidyltransferase family protein compare
LRK54_RS06415 -3.0 -2.1 hypothetical protein compare
LRK54_RS18050 -3.0 -7.8 lipopolysaccharide assembly protein LapB compare
LRK54_RS11975 -3.0 -5.3 SLC13 family permease compare
LRK54_RS06675 -3.0 -8.7 TetR/AcrR family transcriptional regulator compare
LRK54_RS02445 -3.0 -4.0 membrane protein insertion efficiency factor YidD compare
LRK54_RS09805 -2.9 -5.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS00615 -2.9 -4.5 protease modulator HflC compare
LRK54_RS02090 -2.9 -13.9 NAD-glutamate dehydrogenase compare
LRK54_RS13760 -2.9 -7.8 trypsin-like peptidase domain-containing protein compare
LRK54_RS05785 -2.9 -6.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05415 -2.9 -6.7 TetR/AcrR family transcriptional regulator compare
LRK54_RS11375 -2.9 -8.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS03290 -2.8 -1.9 RIP metalloprotease RseP compare
LRK54_RS16940 -2.8 -3.4 RNA polymerase sigma factor RpoE compare
LRK54_RS02535 -2.8 -5.0 50S ribosomal protein L9 compare
LRK54_RS08760 -2.8 -3.3 transaldolase compare
LRK54_RS04720 -2.8 -6.8 phosphoribosylformylglycinamidine synthase compare
LRK54_RS04140 -2.8 -6.7 inositol-phosphate phosphatase compare
LRK54_RS05980 -2.8 -1.9 ATP-binding protein compare
LRK54_RS08585 -2.8 -20.5 RimK family alpha-L-glutamate ligase compare
LRK54_RS05740 -2.8 -5.6 phosphoglycerate kinase compare
LRK54_RS11170 -2.8 -3.3 NADP-dependent malic enzyme compare
LRK54_RS12865 -2.8 -9.8 HPr(Ser) kinase/phosphatase compare
LRK54_RS12670 -2.8 -8.3 glycosyltransferase compare
LRK54_RS16665 -2.8 -11.1 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS12945 -2.7 -7.9 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS05655 -2.7 -1.9 ABC transporter permease compare
LRK54_RS12860 -2.7 -4.6 RNase adapter RapZ compare
LRK54_RS17205 -2.7 -4.9 heavy metal translocating P-type ATPase compare
LRK54_RS01680 -2.7 -7.6 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS05550 -2.7 -2.6 FAD-binding protein compare
LRK54_RS17900 -2.7 -3.6 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS00680 -2.7 -10.6 TerC family protein compare
LRK54_RS05650 -2.6 -4.0 ABC transporter ATP-binding protein compare
LRK54_RS16615 -2.6 -1.8 phosphopyruvate hydratase compare
LRK54_RS00675 -2.6 -9.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS13910 -2.6 -6.8 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS11290 -2.6 -1.8 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS16930 -2.6 -11.4 hypothetical protein compare
LRK54_RS01590 -2.6 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS17225 -2.6 -4.3 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS00405 -2.6 -5.0 FHA domain-containing protein compare
LRK54_RS03125 -2.6 -1.8 preprotein translocase subunit YajC compare
LRK54_RS17270 -2.6 -1.8 DNA translocase FtsK compare
LRK54_RS05985 -2.5 -2.5 response regulator transcription factor compare
LRK54_RS17230 -2.5 -10.4 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS05615 -2.5 -14.1 hypothetical protein compare
LRK54_RS10185 -2.5 -17.7 RDD family protein compare
LRK54_RS12305 -2.5 -12.2 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS06785 -2.5 -1.7 protein-disulfide reductase DsbD compare
LRK54_RS11385 -2.5 -5.7 co-chaperone DjlA compare
LRK54_RS10950 -2.5 -12.9 S41 family peptidase compare
LRK54_RS12625 -2.5 -12.4 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS15035 -2.4 -4.4 M48 family metalloprotease compare
LRK54_RS05630 -2.4 -7.3 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS00085 -2.4 -1.7 tetratricopeptide repeat protein compare
LRK54_RS02460 -2.4 -9.6 phosphoglycolate phosphatase compare
LRK54_RS07020 -2.4 -2.3 ABC transporter permease compare
LRK54_RS01685 -2.4 -11.6 tryptophan synthase subunit beta compare
LRK54_RS00670 -2.4 -4.3 OmpA family protein compare
LRK54_RS16720 -2.4 -6.7 trigger factor compare
LRK54_RS01410 -2.4 -15.3 ABC transporter ATP-binding protein/permease compare
LRK54_RS04625 -2.4 -12.0 serine hydroxymethyltransferase compare
LRK54_RS06515 -2.4 -5.7 rod shape-determining protein MreD compare
LRK54_RS02855 -2.4 -5.3 type I restriction-modification system subunit M compare
LRK54_RS15325 -2.4 -1.4 hypothetical protein compare
LRK54_RS11175 -2.3 -9.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS12595 -2.3 -4.9 (2Fe-2S)-binding protein compare
LRK54_RS17220 -2.3 -3.8 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS05775 -2.3 -10.0 pyruvate kinase compare
LRK54_RS04450 -2.2 -7.8 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS12590 -2.2 -12.6 molybdopterin-dependent oxidoreductase compare
LRK54_RS12300 -2.2 -5.8 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS16755 -2.2 -3.3 SurA N-terminal domain-containing protein compare
LRK54_RS00805 -2.2 -3.0 segregation/condensation protein A compare
LRK54_RS17905 -2.2 -2.9 NfuA family Fe-S biogenesis protein compare
LRK54_RS04050 -2.2 -8.8 glycoside hydrolase compare
LRK54_RS06610 -2.2 -14.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS09000 -2.2 -12.6 HAMP domain-containing histidine kinase compare
LRK54_RS09945 -2.1 -6.9 class I SAM-dependent methyltransferase compare
LRK54_RS12460 -2.1 -2.5 hypothetical protein compare
LRK54_RS03930 -2.1 -11.1 glycosyltransferase family 2 protein compare
LRK54_RS00690 -2.1 -10.6 2-methylcitrate synthase compare
LRK54_RS03405 -2.1 -7.7 ribonuclease G compare
LRK54_RS16935 -2.1 -13.8 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS05610 -2.1 -9.2 GtrA family protein compare
LRK54_RS05200 -2.0 -3.6 hypothetical protein compare
LRK54_RS00695 -2.0 -4.5 methylisocitrate lyase compare
LRK54_RS11565 -2.0 -4.3 anthranilate phosphoribosyltransferase compare
LRK54_RS00435 -2.0 -13.3 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS05635 -2.0 -9.9 dehydrogenase compare
LRK54_RS05495 -2.0 -4.4 met regulon transcriptional regulator MetJ compare
LRK54_RS08670 -2.0 -11.8 LacI family transcriptional regulator compare
LRK54_RS16740 -2.0 -2.7 HU family DNA-binding protein compare
LRK54_RS05735 -2.0 -11.2 maleylacetoacetate isomerase compare
LRK54_RS17505 -2.0 -2.8 preprotein translocase subunit SecG compare
LRK54_RS03185 -2.0 -5.9 phosphoglycerate dehydrogenase compare
LRK54_RS00400 -2.0 -11.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS11765 -2.0 -9.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS05640 -1.9 -9.1 GDP-mannose 4,6-dehydratase compare
LRK54_RS08750 -1.9 -4.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS03105 -1.9 -11.5 phosphotransferase compare
LRK54_RS15020 -1.9 -13.8 polyphosphate kinase 1 compare
LRK54_RS13780 -1.9 -6.2 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS14670 -1.9 -2.0 NrsF family protein compare
LRK54_RS05645 -1.9 -13.0 glycosyltransferase compare
LRK54_RS16600 -1.9 -10.5 aminopeptidase P family protein compare
LRK54_RS07085 -1.9 -14.1 heme o synthase compare
LRK54_RS03675 -1.9 -2.5 redox-regulated ATPase YchF compare
LRK54_RS04710 -1.9 -3.9 glycosyltransferase family 2 protein compare
LRK54_RS02335 -1.8 -7.9 FUSC family protein compare
LRK54_RS16875 -1.8 -14.1 kinase/pyrophosphorylase compare
LRK54_RS04630 -1.8 -1.2 energy-dependent translational throttle protein EttA compare
LRK54_RS03925 -1.8 -10.6 glycosyltransferase family 4 protein compare
LRK54_RS02380 -1.8 -6.0 argininosuccinate lyase compare
LRK54_RS10150 -1.8 -2.1 DNA topoisomerase I compare
LRK54_RS05660 -1.8 -9.5 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS02870 -1.8 -5.5 DUF502 domain-containing protein compare
LRK54_RS08520 -1.8 -12.9 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS06495 -1.7 -12.2 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS16730 -1.7 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS16110 -1.7 -9.2 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS03395 -1.7 -14.1 metalloprotease TldD compare
LRK54_RS11285 -1.7 -5.3 ABC transporter ATP-binding protein compare
LRK54_RS00080 -1.7 -9.2 helix-turn-helix domain-containing protein compare
LRK54_RS16950 -1.6 -11.9 Do family serine endopeptidase compare
LRK54_RS15935 -1.6 -7.5 rRNA pseudouridine synthase compare
LRK54_RS11570 -1.6 -3.6 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS02275 -1.6 -3.5 enoyl-CoA hydratase-related protein compare
LRK54_RS00305 -1.6 -9.4 asparagine synthase B compare
LRK54_RS05710 -1.6 -11.5 pyridoxal-phosphate dependent enzyme compare
LRK54_RS14465 -1.6 -5.5 septum site-determining protein MinC compare
LRK54_RS04995 -1.6 -5.0 LacI family DNA-binding transcriptional regulator compare
LRK54_RS16655 -1.6 -2.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS04025 -1.6 -1.5 diacylglycerol kinase compare
LRK54_RS11785 -1.5 -11.6 VacJ family lipoprotein compare
LRK54_RS16650 -1.5 -5.8 5'/3'-nucleotidase SurE compare
LRK54_RS01340 -1.5 -10.5 amidophosphoribosyltransferase compare
LRK54_RS18055 -1.5 -4.2 glycosyltransferase family 4 protein compare
LRK54_RS02495 -1.5 -5.3 50S ribosomal protein L19 compare
LRK54_RS03375 -1.5 -10.2 metalloprotease PmbA compare
LRK54_RS05665 -1.5 -4.4 dTDP-glucose 4,6-dehydratase compare
LRK54_RS03890 -1.5 -12.8 hypothetical protein compare
LRK54_RS00635 -1.4 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS16945 -1.4 -3.4 sigma-E factor negative regulatory protein compare
LRK54_RS13830 -1.4 -6.4 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS10855 -1.4 -3.8 protein-export chaperone SecB compare
LRK54_RS01600 -1.4 -7.9 histidinol-phosphate transaminase compare
LRK54_RS10665 -1.4 -11.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
LRK54_RS13915 -1.4 -10.1 beta-ketoacyl-ACP synthase I compare
LRK54_RS10955 -1.4 -9.4 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS05275 -1.4 -2.1 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS05670 -1.4 -5.0 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS09845 -1.4 -11.4 efflux RND transporter permease subunit compare
LRK54_RS11770 -1.4 -10.7 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS18060 -1.4 -4.5 polysaccharide biosynthesis protein compare
LRK54_RS05535 -1.4 -5.8 glycosyltransferase family 2 protein compare
LRK54_RS11055 -1.4 -9.6 lipid-binding SYLF domain-containing protein compare
LRK54_RS12005 -1.4 -5.8 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS02180 -1.4 -6.2 UvrD-helicase domain-containing protein compare
LRK54_RS01285 -1.4 -4.6 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS00775 -1.3 -7.3 translational GTPase TypA compare
LRK54_RS02185 -1.3 -3.8 exodeoxyribonuclease V subunit alpha compare
LRK54_RS00420 -1.3 -10.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS15265 -1.3 -7.0 acetyl-CoA C-acyltransferase compare
LRK54_RS02070 -1.3 -4.8 acyl-CoA dehydrogenase family protein compare
LRK54_RS07090 -1.3 -10.1 COX15/CtaA family protein compare
LRK54_RS11775 -1.3 -9.6 ABC transporter substrate-binding protein compare
LRK54_RS08305 -1.3 -10.3 alpha/beta fold hydrolase compare
LRK54_RS00815 -1.3 -4.6 pseudouridine synthase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Sodium nitrite in Rhodanobacter denitrificans FW104-10B01

For stress Sodium nitrite across organisms