Experiment set2IT047 for Rhodanobacter denitrificans FW104-10B01
R2A with Sodium nitrite 50 mM
Group: stressMedia: R2A + Sodium nitrite (50 mM)
Culturing: rhodanobacter_10B01_ML12, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 30 (C), shaken=700 rpm
By: Hans on 2/27/21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Specific Phenotypes
For 3 genes in this experiment
For stress Sodium nitrite in Rhodanobacter denitrificans FW104-10B01
For stress Sodium nitrite across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Soluble cytochromes and functionally related electron carriers | 1 |
| Trehalose Uptake and Utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| diphenyl ethers degradation | 4 | 2 | 1 |
| biphenyl degradation | 5 | 2 | 1 |
| tRNA-uridine 2-thiolation and selenation (bacteria) | 11 | 3 | 2 |