Experiment set2IT047 for Shewanella loihica PV-4

Compare to:

LB with Sodium Chlorite 200 mM

200 most detrimental genes:

  gene name fitness t score description  
Shew_2642 +2.1 4.7 flavodoxin (RefSeq) compare
Shew_3660 +2.1 16.8 glutathione reductase (RefSeq) compare
Shew_1224 +2.0 15.0 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1058 +2.0 7.6 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_3500 +1.9 4.6 putative endoribonuclease L-PSP (RefSeq) compare
Shew_0755 +1.8 3.7 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_2572 +1.7 6.3 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1202 +1.7 7.6 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1601 +1.6 2.4 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1298 guaA +1.6 8.6 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_2000 +1.5 2.1 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_2327 +1.5 1.0 hypothetical protein (RefSeq) compare
Shew_3069 +1.4 1.9 5-formyltetrahydrofolate cyclo-ligase (RefSeq) compare
Shew_1851 +1.4 1.2 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_3682 +1.3 10.6 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1563 +1.3 6.3 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_3681 +1.3 9.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1644 +1.3 1.2 DSBA oxidoreductase (RefSeq) compare
Shew_1714 +1.3 2.4 alpha/beta hydrolase fold (RefSeq) compare
Shew_2785 +1.2 1.1 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_0296 +1.2 0.9 heat shock protein Hsp20 (RefSeq) compare
Shew_2320 +1.2 5.8 RNA methyltransferase (RefSeq) compare
Shew_1992 +1.2 2.7 hypothetical protein (RefSeq) compare
Shew_2049 +1.2 3.6 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_0343 +1.2 1.5 hypothetical protein (RefSeq) compare
Shew_1819 +1.2 2.7 GntR family transcriptional regulator (RefSeq) compare
Shew_1341 +1.2 2.9 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_3295 +1.1 6.8 AFG1 family ATPase (RefSeq) compare
Shew_0127 +1.1 3.2 LexA repressor (RefSeq) compare
Shew_1602 +1.1 2.8 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_1531 grxA +1.1 2.6 glutaredoxin 1 (RefSeq) compare
Shew_2895 +1.1 3.6 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_0057 +1.1 3.6 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_0438 +1.0 0.9 GumN family protein (RefSeq) compare
Shew_1391 +1.0 1.4 CheW protein (RefSeq) compare
Shew_3483 dut +1.0 1.1 deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) compare
Shew_1092 +1.0 3.4 amino acid carrier protein (RefSeq) compare
Shew_3710 tdh +1.0 7.4 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_3388 +1.0 0.6 hypothetical protein (RefSeq) compare
Shew_1713 +1.0 1.4 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_3537 +0.9 1.8 hypothetical protein (RefSeq) compare
Shew_2153 +0.9 1.1 LysR family transcriptional regulator (RefSeq) compare
Shew_2061 +0.9 1.0 radical SAM domain-containing protein (RefSeq) compare
Shew_1865 +0.9 2.6 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_2664 +0.9 4.8 transcriptional regulator, putative (RefSeq) compare
Shew_2666 +0.9 5.2 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_3709 +0.9 6.0 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_2668 +0.9 3.2 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2656 +0.9 4.0 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_3267 +0.9 4.1 sodium/hydrogen exchanger (RefSeq) compare
Shew_1990 +0.9 1.8 heavy metal translocating P-type ATPase (RefSeq) compare
Shew_2406 +0.9 1.5 AraC family transcriptional regulator (RefSeq) compare
Shew_2665 +0.9 6.8 beta-ketoacyl synthase (RefSeq) compare
Shew_1278 +0.9 0.6 hypothetical protein (RefSeq) compare
Shew_1186 +0.8 1.9 transcriptional regulator NrdR (RefSeq) compare
Shew_2554 +0.8 1.0 outer membrane protein W (RefSeq) compare
Shew_2892 +0.8 2.6 major facilitator transporter (RefSeq) compare
Shew_3442 +0.8 1.8 hypothetical protein (RefSeq) compare
Shew_0342 +0.8 4.5 hypothetical protein (RefSeq) compare
Shew_1518 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_3528 +0.8 2.2 rhodanese domain-containing protein (RefSeq) compare
Shew_0695 +0.8 1.2 hypothetical protein (RefSeq) compare
Shew_2667 +0.8 5.7 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_1812 +0.8 4.2 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_2073 +0.8 0.7 lactoylglutathione lyase (RefSeq) compare
Shew_2646 +0.8 0.7 hypothetical protein (RefSeq) compare
Shew_3786 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_0462 +0.8 0.7 hypothetical protein (RefSeq) compare
Shew_1769 +0.8 1.1 NapD family protein (RefSeq) compare
Shew_1059 +0.7 1.6 hypothetical protein (RefSeq) compare
Shew_0383 +0.7 3.1 malate dehydrogenase (RefSeq) compare
Shew_2481 +0.7 3.4 porin (RefSeq) compare
Shew_2350 +0.7 1.0 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_1800 +0.7 1.3 putative GAF sensor protein (RefSeq) compare
Shew_0570 +0.7 0.6 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_2194 +0.7 0.5 hypothetical protein (RefSeq) compare
Shew_0421 +0.7 1.3 phage shock protein C, PspC (RefSeq) compare
Shew_2573 +0.7 5.2 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_3131 +0.7 3.3 poly(A) polymerase (RefSeq) compare
Shew_3683 +0.7 3.7 extracellular solute-binding protein (RefSeq) compare
Shew_1227 +0.7 0.9 glutamate--cysteine ligase (RefSeq) compare
Shew_0848 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_1300 +0.7 2.0 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1078 +0.7 4.4 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_0481 +0.7 1.9 hypothetical protein (RefSeq) compare
Shew_0450 +0.7 2.7 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_1962 +0.7 1.2 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (RefSeq) compare
Shew_2453 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_1987 +0.7 1.9 Cbb3-type cytochrome oxidase component (RefSeq) compare
Shew_1257 +0.7 2.2 DNA repair protein RadC (RefSeq) compare
Shew_3225 +0.7 1.9 glutathione synthetase (RefSeq) compare
Shew_2643 +0.7 0.9 pseudouridylate synthase (RefSeq) compare
Shew_1488 +0.7 1.4 FAD linked oxidase domain-containing protein (RefSeq) compare
Shew_2423 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_2544 +0.6 1.4 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_2644 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_2652 +0.6 2.2 hypothetical protein (RefSeq) compare
Shew_2106 +0.6 2.5 hypothetical protein (RefSeq) compare
Shew_2175 nhaB +0.6 3.1 sodium/proton antiporter (RefSeq) compare
Shew_3487 pyrE +0.6 2.2 orotate phosphoribosyltransferase (RefSeq) compare
Shew_2890 +0.6 0.7 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_2367 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_0860 +0.6 0.6 hypothetical protein (RefSeq) compare
Shew_0839 +0.6 1.9 WD-40 repeat-containing protein (RefSeq) compare
Shew_2199 +0.6 1.7 histidinol-phosphate aminotransferase (RefSeq) compare
Shew_0799 +0.6 1.2 MarR family transcriptional regulator (RefSeq) compare
Shew_2906 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_2403 +0.6 0.8 arylesterase (RefSeq) compare
Shew_3443 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_1122 +0.6 3.3 hypothetical protein (RefSeq) compare
Shew_0678 +0.6 1.6 protoporphyrinogen oxidase (RefSeq) compare
Shew_0056 +0.6 3.9 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_2708 +0.6 1.4 Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) compare
Shew_1673 fabG +0.6 0.6 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_3064 gcvT +0.6 4.5 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_2856 +0.6 2.1 ThiJ/PfpI domain-containing protein (RefSeq) compare
Shew_1920 +0.6 2.8 alpha/beta hydrolase fold (RefSeq) compare
Shew_1393 +0.6 1.0 FlhB domain-containing protein (RefSeq) compare
Shew_1994 +0.6 1.1 universal stress protein UspE (RefSeq) compare
Shew_2884 +0.6 1.3 glycine cleavage system regulatory protein-like protein (RefSeq) compare
Shew_0709 +0.6 4.4 catalase/peroxidase HPI (RefSeq) compare
Shew_2571 +0.6 3.0 propionyl-CoA carboxylase (RefSeq) compare
Shew_2740 +0.6 0.5 YfaZ family protein (RefSeq) compare
Shew_1287 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_0487 +0.6 1.0 redox-active disulfide protein 2 (RefSeq) compare
Shew_0086 +0.6 4.3 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_2957 +0.6 2.0 hypothetical protein (RefSeq) compare
Shew_2237 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_0430 +0.5 1.1 histone family protein DNA-binding protein (RefSeq) compare
Shew_3729 +0.5 1.0 coproporphyrinogen III oxidase (RefSeq) compare
Shew_1657 sucC +0.5 0.6 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_2026 +0.5 1.3 alanine dehydrogenase (RefSeq) compare
Shew_0728 +0.5 2.3 dihydroorotase (RefSeq) compare
Shew_3261 +0.5 0.7 thiopurine S-methyltransferase (RefSeq) compare
Shew_1514 upp +0.5 1.6 uracil phosphoribosyltransferase (RefSeq) compare
Shew_0698 +0.5 3.0 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_3686 +0.5 1.7 molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq) compare
Shew_0055 +0.5 3.8 hypothetical protein (RefSeq) compare
Shew_0932 +0.5 0.8 radical SAM domain-containing protein (RefSeq) compare
Shew_3687 +0.5 3.2 molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq) compare
Shew_1797 +0.5 0.8 paraquat-inducible protein A (RefSeq) compare
Shew_0604 +0.5 1.8 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_1731 +0.5 0.4 histidine triad (HIT) protein (RefSeq) compare
Shew_3532 +0.5 1.7 globin (RefSeq) compare
Shew_0636 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_1457 +0.5 1.9 response regulator receiver modulated CheW protein (RefSeq) compare
Shew_0640 +0.5 0.8 TPR repeat-containing protein (RefSeq) compare
Shew_0261 +0.5 0.4 hypothetical protein (RefSeq) compare
Shew_1458 +0.5 2.2 serine/threonine transporter SstT (RefSeq) compare
Shew_3080 +0.5 1.6 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_0782 +0.5 1.7 DNA-binding transcriptional regulator AsnC (RefSeq) compare
Shew_1810 +0.5 1.8 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_1811 +0.5 2.7 hypothetical protein (RefSeq) compare
Shew_1295 +0.5 2.0 hypothetical protein (RefSeq) compare
Shew_2705 +0.5 1.2 Na(+)-translocating NADH-quinone reductase subunit E (RefSeq) compare
Shew_1574 +0.5 2.2 ATP-binding Mrp/Nbp35 family protein (RefSeq) compare
Shew_0220 +0.5 1.2 phosphoglycolate phosphatase (RefSeq) compare
Shew_1606 +0.5 0.4 hypothetical protein (RefSeq) compare
Shew_1929 +0.5 1.8 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_3034 +0.5 1.7 diguanylate cyclase (RefSeq) compare
Shew_0373 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_1684 +0.5 1.1 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_2587 +0.5 2.2 hypothetical protein (RefSeq) compare
Shew_1732 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_1985 +0.5 1.1 cytochrome c oxidase, cbb3-type, subunit I (RefSeq) compare
Shew_0059 +0.5 4.1 molybdopterin oxidoreductase (RefSeq) compare
Shew_0692 +0.5 1.7 hypothetical protein (RefSeq) compare
Shew_0616 +0.5 1.5 SH3 domain-containing protein (RefSeq) compare
Shew_0822 +0.5 1.7 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_0945 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_2569 +0.5 1.5 MerR family transcriptional regulator (RefSeq) compare
Shew_1906 +0.5 1.3 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0802 +0.5 1.3 chromate transporter (RefSeq) compare
Shew_2584 +0.5 3.1 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_3336 +0.5 0.7 MarR family transcriptional regulator (RefSeq) compare
Shew_2900 +0.5 2.1 hypothetical protein (RefSeq) compare
Shew_2148 +0.5 1.1 hypothetical protein (RefSeq) compare
Shew_3684 +0.5 3.2 binding-protein-dependent transport systems inner membrane component (RefSeq) compare
Shew_2775 +0.5 1.4 MATE efflux family protein (RefSeq) compare
Shew_1828 +0.5 2.1 peptidoglycan binding domain-containing protein (RefSeq) compare
Shew_3049 +0.5 1.1 major facilitator transporter (RefSeq) compare
Shew_0857 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_0396 +0.5 1.0 methylation site containing protein (RefSeq) compare
Shew_2282 +0.5 0.7 Fis family transcriptional regulator (RefSeq) compare
Shew_1356 +0.5 1.8 flagellin domain-containing protein (RefSeq) compare
Shew_1781 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_1313 +0.5 1.1 TetR family transcriptional regulator (RefSeq) compare
Shew_2950 +0.5 0.9 RluA family pseudouridine synthase (RefSeq) compare
Shew_3693 +0.5 3.5 ADP-heptose--lipooligosaccharide heptosyltransferase III (RefSeq) compare
Shew_2402 +0.5 0.4 ABC transporter-related protein (RefSeq) compare
Shew_1471 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_1557 +0.5 1.3 cupin 4 family protein (RefSeq) compare
Shew_0788 +0.5 1.1 dienelactone hydrolase (RefSeq) compare
Shew_3539 +0.4 0.8 hypothetical protein (RefSeq) compare
Shew_1485 +0.4 1.9 hypothetical protein (RefSeq) compare
Shew_0226 +0.4 1.3 hypothetical protein (RefSeq) compare
Shew_1780 +0.4 2.0 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_0026 +0.4 0.8 hypothetical protein (RefSeq) compare
Shew_1615 +0.4 0.9 ABC transporter-related protein (RefSeq) compare
Shew_1483 +0.4 1.6 hypothetical protein (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in stress experiments

For stress Sodium Chlorite across organisms