Experiment set2IT047 for Ralstonia sp. UNC404CL21Col

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14540 -6.5 -7.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02155 -6.5 -6.3 anthranilate phosphoribosyltransferase compare
ABZR87_RS15790 -6.2 -4.2 3-oxoadipyl-CoA thiolase compare
ABZR87_RS12080 -6.2 -4.6 pca operon transcription factor PcaQ compare
ABZR87_RS08630 -6.0 -10.8 dihydroorotase compare
ABZR87_RS09450 -6.0 -8.2 prephenate dehydratase compare
ABZR87_RS15775 -5.9 -2.8 4-carboxymuconolactone decarboxylase compare
ABZR87_RS02140 -5.9 -13.7 anthranilate synthase component I compare
ABZR87_RS02565 -5.9 -4.0 glutamate synthase subunit beta compare
ABZR87_RS15800 -5.9 -10.3 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS02160 -5.9 -5.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS13790 -5.8 -10.4 chorismate synthase compare
ABZR87_RS05200 -5.8 -17.4 homoserine O-acetyltransferase compare
ABZR87_RS18165 -5.7 -1.9 hypothetical protein compare
ABZR87_RS02570 -5.7 -19.4 glutamate synthase-related protein compare
ABZR87_RS05145 -5.7 -1.1 copper chaperone PCu(A)C compare
ABZR87_RS00510 -5.7 -17.2 MFS transporter compare
ABZR87_RS15745 -5.6 -8.9 LysR family transcriptional regulator conserved
ABZR87_RS07360 -5.6 -14.9 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09445 -5.6 -14.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS15795 -5.6 -8.5 CoA transferase subunit B compare
ABZR87_RS01110 -5.5 -10.7 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS02640 -5.5 -18.1 diaminopimelate decarboxylase compare
ABZR87_RS15780 -5.5 -7.9 3-oxoadipate enol-lactonase conserved
ABZR87_RS00190 -5.5 -9.2 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS09465 -5.4 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS10170 -5.4 -7.6 RseA family anti-sigma factor compare
ABZR87_RS10175 -5.4 -9.0 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01605 -5.3 -10.7 shikimate dehydrogenase compare
ABZR87_RS00210 -5.2 -6.2 nitrite/sulfite reductase compare
ABZR87_RS14530 -5.2 -7.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS00435 -5.2 -11.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS11230 -5.2 -11.1 HlyD family secretion protein compare
ABZR87_RS04995 -5.2 -2.8 DNA topoisomerase III compare
ABZR87_RS15740 -5.2 -12.6 4-hydroxybenzoate 3-monooxygenase conserved
ABZR87_RS12085 -5.2 -13.8 protocatechuate 3,4-dioxygenase subunit beta conserved
ABZR87_RS15785 -5.1 -7.5 3-carboxy-cis,cis-muconate cycloisomerase conserved
ABZR87_RS17310 -5.1 -6.2 PadR family transcriptional regulator compare
ABZR87_RS04975 -5.1 -4.4 peptide deformylase compare
ABZR87_RS06770 -5.1 -7.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS14535 -5.0 -5.5 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS00505 -5.0 -8.5 LysR family transcriptional regulator compare
ABZR87_RS14500 -5.0 -15.4 tryptophan synthase subunit beta compare
ABZR87_RS02145 -5.0 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS07380 -5.0 -12.5 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02595 -5.0 -9.7 shikimate kinase compare
ABZR87_RS12090 -5.0 -6.4 protocatechuate 3,4-dioxygenase subunit alpha compare
ABZR87_RS11760 -5.0 -1.0 membrane protein compare
ABZR87_RS05590 -4.9 -3.1 orotate phosphoribosyltransferase compare
ABZR87_RS16170 -4.9 -5.8 argininosuccinate lyase compare
ABZR87_RS22300 -4.9 -0.9 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS14490 -4.9 -9.4 tryptophan synthase subunit alpha compare
ABZR87_RS14950 -4.9 -2.1 acetolactate synthase small subunit compare
ABZR87_RS13285 -4.9 -13.9 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS22970 -4.8 -11.1 cystathionine gamma-synthase family protein compare
ABZR87_RS04785 -4.7 -11.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS08645 -4.7 -0.9 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS16660 -4.7 -5.0 helix-turn-helix domain-containing protein compare
ABZR87_RS04940 -4.6 -10.2 PAS domain-containing sensor histidine kinase compare
ABZR87_RS06950 -4.6 -13.4 pitrilysin family protein compare
ABZR87_RS02590 -4.5 -11.9 3-dehydroquinate synthase compare
ABZR87_RS06710 -4.5 -16.6 glutathione synthase compare
ABZR87_RS09615 -4.5 -2.1 50S ribosomal protein L19 compare
ABZR87_RS06705 -4.5 -18.3 glutamate--cysteine ligase compare
ABZR87_RS12785 -4.5 -6.8 endopeptidase La compare
ABZR87_RS00185 -4.5 -2.9 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS19470 -4.4 -15.6 UDP-glucose 4-epimerase GalE compare
ABZR87_RS14115 -4.4 -3.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21940 -4.4 -0.8 hypothetical protein compare
ABZR87_RS01810 -4.4 -3.2 glutamate 5-kinase compare
ABZR87_RS21095 -4.3 -0.8 TRAP transporter small permease compare
ABZR87_RS00205 -4.3 -2.7 DUF934 domain-containing protein compare
ABZR87_RS16185 -4.3 -1.8 dCTP deaminase compare
ABZR87_RS16270 -4.3 -1.4 cold-shock protein compare
ABZR87_RS00835 -4.2 -5.7 argininosuccinate synthase compare
ABZR87_RS04865 -4.2 -4.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00220 -4.1 -9.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS05100 -4.1 -6.5 RNA polymerase-binding protein DksA compare
ABZR87_RS00195 -4.1 -4.1 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS05580 -4.1 -2.7 diaminopimelate epimerase compare
ABZR87_RS15855 -4.1 -11.1 GT4 family glycosyltransferase PelF compare
ABZR87_RS06745 -4.1 -7.3 S41 family peptidase compare
ABZR87_RS14505 -4.1 -4.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS06645 -4.0 -2.0 TlpA disulfide reductase family protein compare
ABZR87_RS01615 -4.0 -1.0 RNB domain-containing ribonuclease compare
ABZR87_RS21365 -3.9 -1.1 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS22405 -3.9 -1.0 hypothetical protein compare
ABZR87_RS13250 -3.9 -2.5 phosphoserine phosphatase SerB compare
ABZR87_RS11235 -3.8 -8.4 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
ABZR87_RS05170 -3.8 -3.7 acetylglutamate kinase compare
ABZR87_RS02850 -3.8 -3.8 elongation factor Tu compare
ABZR87_RS13415 -3.8 -8.4 IclR family transcriptional regulator compare
ABZR87_RS13475 -3.8 -7.6 PAS domain S-box protein compare
ABZR87_RS08625 -3.7 -3.6 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS10550 -3.7 -1.6 outer membrane protein assembly factor BamC compare
ABZR87_RS08070 -3.7 -1.9 pyruvate kinase compare
ABZR87_RS12790 -3.7 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06405 -3.7 -1.0 hypothetical protein compare
ABZR87_RS15875 -3.6 -17.9 tetratricopeptide repeat protein compare
ABZR87_RS06845 -3.6 -10.4 heme o synthase compare
ABZR87_RS12070 -3.6 -1.7 porin compare
ABZR87_RS08655 -3.6 -6.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS15955 -3.5 -2.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS13705 -3.5 -1.1 integration host factor subunit alpha compare
ABZR87_RS11440 -3.5 -6.3 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS22330 -3.5 -2.9 hypothetical protein compare
ABZR87_RS00385 -3.5 -0.9 response regulator transcription factor compare
ABZR87_RS09935 -3.5 -5.8 amino acid aminotransferase compare
ABZR87_RS14510 -3.4 -5.9 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS15275 -3.4 -1.3 hypothetical protein compare
ABZR87_RS05025 -3.4 -1.9 rod shape-determining protein MreC compare
ABZR87_RS15870 -3.4 -6.8 hypothetical protein compare
ABZR87_RS06495 -3.4 -2.3 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS05350 -3.4 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS15850 -3.4 -10.9 exopolysaccharide Pel transporter PelG compare
ABZR87_RS07035 -3.3 -8.9 RNase adapter RapZ compare
ABZR87_RS15880 -3.3 -17.5 bifunctional glycoside hydrolase 114/ polysaccharide deacetylase family protein compare
ABZR87_RS10240 -3.3 -1.8 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS05010 -3.3 -2.2 rod shape-determining protein RodA compare
ABZR87_RS08530 -3.2 -2.2 Flp family type IVb pilin compare
ABZR87_RS18975 -3.2 -1.8 entericidin A/B family lipoprotein compare
ABZR87_RS09635 -3.1 -1.9 ribosome small subunit-dependent GTPase A compare
ABZR87_RS08660 -3.1 -7.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS07705 -3.1 -3.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS00325 -3.0 -2.3 peptidylprolyl isomerase compare
ABZR87_RS04945 -3.0 -2.3 DUF4390 domain-containing protein compare
ABZR87_RS16055 -3.0 -6.3 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS07050 -3.0 -1.4 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS11240 -3.0 -3.4 MarR family transcriptional regulator compare
ABZR87_RS07665 -3.0 -7.1 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS08700 -3.0 -10.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06715 -3.0 -3.4 PTS sugar transporter subunit IIA compare
ABZR87_RS01760 -3.0 -0.8 PP0621 family protein compare
ABZR87_RS02655 -3.0 -8.5 anti-sigma factor compare
ABZR87_RS11125 -2.9 -6.7 cell division protein ZapE compare
ABZR87_RS04125 -2.9 -2.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS15865 -2.9 -7.6 PelD GGDEF domain-containing protein compare
ABZR87_RS11245 -2.9 -5.1 translational GTPase TypA compare
ABZR87_RS06350 -2.9 -5.8 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS00200 -2.9 -2.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS08695 -2.9 -12.0 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS04500 -2.8 -1.6 hypothetical protein compare
ABZR87_RS06850 -2.8 -7.3 SCO family protein compare
ABZR87_RS15405 -2.8 -2.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS00285 -2.8 -1.5 acetylornithine transaminase compare
ABZR87_RS06955 -2.8 -6.6 pitrilysin family protein compare
ABZR87_RS14675 -2.8 -0.7 glyoxalase compare
ABZR87_RS01690 -2.8 -0.7 collagen-like triple helix repeat-containing protein compare
ABZR87_RS01780 -2.7 -0.7 MarC family protein compare
ABZR87_RS07675 -2.7 -6.6 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS01645 -2.7 -3.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS14955 -2.7 -4.5 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00215 -2.7 -4.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS01640 -2.7 -2.9 TlpA disulfide reductase family protein compare
ABZR87_RS15860 -2.7 -4.8 LPS N-acetylglucosaminyl transferase compare
ABZR87_RS13050 -2.6 -1.0 GpE family phage tail protein compare
ABZR87_RS01675 -2.6 -1.5 carbohydrate kinase family protein compare
ABZR87_RS10610 -2.6 -1.5 inositol monophosphatase family protein compare
ABZR87_RS09515 -2.6 -1.5 cysteine synthase CysM compare
ABZR87_RS23380 -2.6 -0.9 chemotaxis protein CheW compare
ABZR87_RS11325 -2.5 -2.4 hypothetical protein compare
ABZR87_RS10820 -2.5 -7.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS10785 -2.5 -5.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS22520 -2.5 -1.8 ABATE domain-containing protein compare
ABZR87_RS13175 -2.5 -1.7 tRNA-Leu compare
ABZR87_RS10120 -2.4 -1.4 YceD family protein compare
ABZR87_RS11815 -2.4 -8.1 [protein-PII] uridylyltransferase compare
ABZR87_RS11015 -2.4 -4.4 amino-acid N-acetyltransferase compare
ABZR87_RS07605 -2.4 -2.1 D-aminoacyl-tRNA deacylase compare
ABZR87_RS04190 -2.4 -1.1 hypothetical protein compare
ABZR87_RS09710 -2.4 -3.1 tRNA-Arg compare
ABZR87_RS16960 -2.4 -4.1 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS22920 -2.3 -3.2 phosphogluconate dehydratase compare
ABZR87_RS10045 -2.3 -1.5 lactate utilization protein C compare
ABZR87_RS15395 -2.3 -1.9 uracil phosphoribosyltransferase compare
ABZR87_RS18140 -2.3 -2.3 type III secretion system export apparatus subunit SctR compare
ABZR87_RS13205 -2.2 -2.7 hypothetical protein compare
ABZR87_RS13300 -2.2 -7.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS07475 -2.2 -8.4 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABZR87_RS05015 -2.2 -5.3 penicillin-binding protein 2 compare
ABZR87_RS09955 -2.2 -4.2 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS10780 -2.2 -4.4 PD-(D/E)XK nuclease family protein compare
ABZR87_RS20555 -2.2 -3.7 helix-turn-helix transcriptional regulator compare
ABZR87_RS05000 -2.2 -9.9 LysR family transcriptional regulator compare
ABZR87_RS00935 -2.1 -5.4 polynucleotide adenylyltransferase PcnB compare
ABZR87_RS08650 -2.1 -7.7 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS12795 -2.1 -4.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS16125 -2.1 -7.5 heme biosynthesis protein HemY compare
ABZR87_RS02320 -2.1 -1.8 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS10980 -2.1 -1.2 tRNA-Leu compare
ABZR87_RS05065 -2.1 -3.2 tyrosine recombinase XerC compare
ABZR87_RS01485 -2.1 -2.5 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS00795 -2.0 -3.0 site-specific tyrosine recombinase XerD compare
ABZR87_RS18400 -2.0 -1.3 hypothetical protein compare
ABZR87_RS14965 -2.0 -2.6 DUF3619 family protein compare
ABZR87_RS16340 -2.0 -1.4 ABC transporter ATP-binding protein compare
ABZR87_RS16250 -2.0 -3.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS02575 -2.0 -5.9 transposase compare
ABZR87_RS20505 -2.0 -1.4 hypothetical protein compare
ABZR87_RS00875 -1.9 -2.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Ralstonia sp. UNC404CL21Col

For carbon source 4-Hydroxybenzoic Acid across organisms