Experiment set2IT046 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

L-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS20350 +2.3 14.8 gliding motility lipoprotein GldH compare
CA265_RS08320 +2.2 16.7 DNA mismatch repair protein MutT compare
CA265_RS08325 +1.8 6.6 haloacid dehalogenase compare
CA265_RS18125 +1.6 8.5 gliding motility protein GldL compare
CA265_RS22985 +1.5 13.5 helicase SNF2 compare
CA265_RS22800 +1.5 12.2 glycosyl transferase compare
CA265_RS18120 +1.5 11.9 gliding motility protein GldM compare
CA265_RS23505 +1.5 5.2 biopolymer transporter ExbD compare
CA265_RS03295 +1.5 12.0 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS22805 +1.5 12.2 glycosyl transferase compare
CA265_RS19945 +1.4 8.6 hypothetical protein compare
CA265_RS18115 +1.4 9.5 gliding motility protein GldN compare
CA265_RS06250 +1.4 3.4 RNA polymerase subunit sigma-70 compare
CA265_RS15085 +1.4 10.3 hypothetical protein compare
CA265_RS03260 +1.3 10.1 multidrug ABC transporter ATP-binding protein compare
CA265_RS19940 +1.3 11.6 hypothetical protein compare
CA265_RS18130 +1.3 10.6 gliding motility-associated lipoprotein compare
CA265_RS18990 +1.3 12.3 cell surface protein SprA compare
CA265_RS15115 +1.3 8.6 porin compare
CA265_RS23635 +1.3 11.1 gliding motility lipoprotein GldJ compare
CA265_RS23155 +1.3 8.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS19030 +1.3 8.5 hypothetical protein compare
CA265_RS03290 +1.3 9.7 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS06585 +1.3 7.7 hypothetical protein compare
CA265_RS23510 +1.3 7.6 energy transducer TonB compare
CA265_RS18225 +1.3 7.9 DNA-binding response regulator compare
CA265_RS15070 +1.3 7.8 hypothetical protein compare
CA265_RS14825 +1.2 3.5 outer membrane protein assembly factor BamD compare
CA265_RS23985 +1.2 9.0 gliding motility lipoprotein GldB compare
CA265_RS02760 +1.2 2.4 hypothetical protein compare
CA265_RS23520 +1.2 8.0 phosphate ABC transporter substrate-binding protein compare
CA265_RS21905 +1.1 6.4 hypothetical protein compare
CA265_RS23515 +1.1 4.7 hypothetical protein compare
CA265_RS21060 +1.1 4.1 hypothetical protein compare
CA265_RS19740 +1.1 6.0 gliding motility lipoprotein GldD compare
CA265_RS19380 +1.0 8.0 beta-carotene 15,15'-monooxygenase compare
CA265_RS18090 +1.0 9.2 gliding motility protein compare
CA265_RS20315 +1.0 8.8 hypothetical protein compare
CA265_RS02965 +1.0 6.6 hypothetical protein compare
CA265_RS23545 +1.0 2.1 NADH dehydrogenase subunit D compare
CA265_RS24790 +1.0 7.8 peptidylprolyl isomerase compare
CA265_RS20320 +1.0 9.3 hypothetical protein compare
CA265_RS03495 +1.0 2.8 cytochrome c biogenesis protein compare
CA265_RS23525 +1.0 7.4 hypothetical protein compare
CA265_RS24720 +1.0 8.7 multidrug transporter compare
CA265_RS09840 +1.0 2.7 YajQ family cyclic di-GMP-binding protein compare
CA265_RS09720 +1.0 6.7 transglycosylase compare
CA265_RS15210 +1.0 6.6 DNA-binding response regulator compare
CA265_RS17555 +1.0 6.9 hypothetical protein compare
CA265_RS04330 +0.9 2.9 transcriptional regulator compare
CA265_RS00655 +0.9 5.6 RNA polymerase subunit sigma-24 compare
CA265_RS02045 +0.9 1.0 hypothetical protein compare
CA265_RS12940 +0.9 4.7 peptidase dimerization domain protein compare
CA265_RS21000 +0.9 5.0 ribosome silencing factor compare
CA265_RS13695 +0.9 4.1 hypothetical protein compare
CA265_RS08630 +0.8 3.7 esterase compare
CA265_RS21865 +0.8 5.5 two-component sensor histidine kinase compare
CA265_RS08085 +0.8 5.1 aminodeoxychorismate lyase compare
CA265_RS01975 +0.8 1.9 cell division protein compare
CA265_RS19590 +0.8 2.0 hypothetical protein compare
CA265_RS17455 +0.8 4.2 hypothetical protein compare
CA265_RS21835 +0.8 2.1 hypothetical protein compare
CA265_RS16005 +0.8 4.4 hypothetical protein compare
CA265_RS23120 +0.8 3.2 hypothetical protein compare
CA265_RS23640 +0.8 5.8 hypothetical protein compare
CA265_RS07595 +0.8 4.3 MerR family transcriptional regulator compare
CA265_RS21900 +0.8 6.1 two-component sensor histidine kinase compare
CA265_RS21620 +0.8 5.6 hybrid sensor histidine kinase/response regulator compare
CA265_RS13225 +0.8 5.3 exonuclease compare
CA265_RS11670 +0.7 4.9 hypothetical protein compare
CA265_RS04645 +0.7 5.0 cation transporter compare
CA265_RS19050 +0.7 2.1 acylphosphatase compare
CA265_RS10600 +0.7 3.6 RNA polymerase subunit sigma-24 compare
CA265_RS23145 +0.7 2.7 hypothetical protein compare
CA265_RS09140 +0.7 2.8 MerR family transcriptional regulator compare
CA265_RS17720 +0.7 6.1 hypothetical protein compare
CA265_RS16995 +0.7 2.0 hypothetical protein compare
CA265_RS08905 +0.7 2.3 DNA helicase RecQ compare
CA265_RS21565 +0.7 1.0 cold-shock protein compare
CA265_RS13655 +0.7 4.1 hypothetical protein compare
CA265_RS03115 +0.7 1.7 peroxiredoxin compare
CA265_RS04640 +0.7 3.7 efflux transporter periplasmic adaptor subunit compare
CA265_RS21130 +0.7 4.7 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS21870 +0.7 3.3 DNA-binding response regulator compare
CA265_RS00270 +0.7 1.1 hypothetical protein compare
CA265_RS21360 +0.7 2.1 hypothetical protein compare
CA265_RS24980 +0.6 3.4 hypothetical protein compare
CA265_RS24230 +0.6 4.8 RNA polymerase sigma factor compare
CA265_RS11905 +0.6 2.6 hypothetical protein compare
CA265_RS12945 +0.6 4.7 hypothetical protein compare
CA265_RS19655 +0.6 2.6 carboxymuconolactone decarboxylase family protein compare
CA265_RS18140 +0.6 3.9 DUF4271 domain-containing protein compare
CA265_RS22690 +0.6 4.6 hypothetical protein compare
CA265_RS17560 +0.6 4.1 peptidylprolyl isomerase compare
CA265_RS15615 +0.6 3.5 malate dehydrogenase compare
CA265_RS08880 +0.6 4.7 chromate transporter compare
CA265_RS21220 +0.6 3.7 hypothetical protein compare
CA265_RS22710 +0.6 4.2 hypothetical protein compare
CA265_RS01205 +0.6 3.2 import component protein compare
CA265_RS07885 +0.6 3.6 response regulator compare
CA265_RS24805 +0.6 3.6 hypothetical protein compare
CA265_RS21255 +0.6 4.0 hypothetical protein compare
CA265_RS03490 +0.5 4.1 hypothetical protein compare
CA265_RS01715 +0.5 3.1 hypothetical protein compare
CA265_RS16020 +0.5 3.8 ABC transporter ATP-binding protein compare
CA265_RS07590 +0.5 2.8 hypothetical protein compare
CA265_RS04635 +0.5 4.7 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS04655 +0.5 2.9 DNA-binding response regulator compare
CA265_RS15270 +0.5 2.4 hypothetical protein compare
CA265_RS20330 +0.5 4.4 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA265_RS12890 +0.5 3.6 hypothetical protein compare
CA265_RS22620 +0.5 0.9 hypothetical protein compare
CA265_RS19980 +0.5 2.5 hypothetical protein compare
CA265_RS01200 +0.5 2.3 hypothetical protein compare
CA265_RS13660 +0.5 3.5 oxidoreductase compare
CA265_RS13740 +0.5 3.4 cysteine synthase compare
CA265_RS25295 +0.5 3.4 DoxX family protein compare
CA265_RS16585 +0.5 1.4 hypothetical protein compare
CA265_RS22010 +0.5 1.1 hypothetical protein compare
CA265_RS04275 +0.5 3.6 ATP-dependent protease ATP-binding subunit ClpX compare
CA265_RS18870 +0.5 1.9 hypothetical protein compare
CA265_RS15030 +0.5 2.5 PIN domain nuclease compare
CA265_RS00805 +0.5 2.6 hypothetical protein compare
CA265_RS20070 +0.5 2.3 NadR compare
CA265_RS01680 +0.5 3.8 hypothetical protein compare
CA265_RS23800 +0.5 3.0 methyltransferase type 12 compare
CA265_RS03255 +0.5 3.2 glycerophosphodiester phosphodiesterase compare
CA265_RS13625 +0.5 3.0 hypothetical protein compare
CA265_RS15215 +0.5 4.1 two-component sensor histidine kinase compare
CA265_RS01745 +0.5 3.6 hypothetical protein compare
CA265_RS13500 +0.5 2.0 hypothetical protein compare
CA265_RS20570 +0.5 2.7 hypothetical protein compare
CA265_RS25365 +0.5 2.6 glycerol acyltransferase compare
CA265_RS14390 +0.5 2.3 hypothetical protein compare
CA265_RS20440 +0.5 2.1 hypothetical protein compare
CA265_RS08345 +0.5 2.6 L-fucose mutarotase compare
CA265_RS25265 +0.5 2.0 hypothetical protein compare
CA265_RS04450 +0.5 3.3 hypothetical protein compare
CA265_RS19965 +0.5 2.3 hypothetical protein compare
CA265_RS25260 +0.5 1.3 hypothetical protein compare
CA265_RS15865 +0.5 1.1 cupin compare
CA265_RS13485 +0.5 1.5 hypothetical protein compare
CA265_RS04745 +0.5 2.9 hypothetical protein compare
CA265_RS20305 +0.5 3.7 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS20310 +0.5 3.9 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS19645 +0.5 3.1 GNAT family N-acetyltransferase compare
CA265_RS13985 +0.5 1.6 hypothetical protein compare
CA265_RS04445 +0.5 1.2 hypothetical protein compare
CA265_RS14960 +0.5 1.5 hypothetical protein compare
CA265_RS23705 +0.5 2.6 esterase compare
CA265_RS24995 +0.5 2.7 hypothetical protein compare
CA265_RS09045 +0.5 3.7 ABC transporter permease compare
CA265_RS23090 +0.4 1.5 transcriptional regulator compare
CA265_RS04020 +0.4 3.3 hypothetical protein compare
CA265_RS01725 +0.4 3.3 hypothetical protein compare
CA265_RS00490 +0.4 0.9 hypothetical protein compare
CA265_RS20335 +0.4 3.9 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS16480 +0.4 3.3 hypothetical protein compare
CA265_RS01165 +0.4 1.4 hypothetical protein compare
CA265_RS24000 +0.4 2.5 hypothetical protein compare
CA265_RS20730 +0.4 2.3 hypothetical protein compare
CA265_RS10390 +0.4 1.7 hypothetical protein compare
CA265_RS13205 +0.4 2.7 zinc/iron permease compare
CA265_RS18030 +0.4 2.4 hypothetical protein compare
CA265_RS20940 +0.4 2.8 hypothetical protein compare
CA265_RS13510 +0.4 3.1 TetR family transcriptional regulator compare
CA265_RS17575 +0.4 3.1 acyl-CoA dehydrogenase compare
CA265_RS21290 +0.4 1.7 hypothetical protein compare
CA265_RS00665 +0.4 1.4 lysine transporter LysE compare
CA265_RS02745 +0.4 1.9 hypothetical protein compare
CA265_RS09555 +0.4 1.4 phage envelope protein compare
CA265_RS17275 +0.4 2.7 GDSL family lipase compare
CA265_RS17565 +0.4 1.7 hypothetical protein compare
CA265_RS14615 +0.4 1.6 hypothetical protein compare
CA265_RS19455 +0.4 3.1 hypothetical protein compare
CA265_RS04650 +0.4 3.4 two-component sensor histidine kinase compare
CA265_RS21250 +0.4 3.2 thioredoxin compare
CA265_RS21715 +0.4 2.6 hypothetical protein compare
CA265_RS23935 +0.4 1.3 hypothetical protein compare
CA265_RS19535 +0.4 2.9 hypothetical protein compare
CA265_RS07880 +0.4 2.4 transcriptional regulator compare
CA265_RS14630 +0.4 2.9 AraC family transcriptional regulator compare
CA265_RS01730 +0.4 1.8 hypothetical protein compare
CA265_RS01780 +0.4 2.6 hypothetical protein compare
CA265_RS21445 +0.4 2.2 exodeoxyribonuclease III compare
CA265_RS22205 +0.4 2.1 hypothetical protein compare
CA265_RS22790 +0.4 2.6 hypothetical protein compare
CA265_RS17060 +0.4 2.6 adenylyl-sulfate kinase compare
CA265_RS08100 +0.4 2.5 cyclic nucleotide-binding protein compare
CA265_RS21645 +0.4 2.5 response regulator compare
CA265_RS21625 +0.4 3.3 histidine kinase compare
CA265_RS15195 +0.4 2.5 hypothetical protein compare
CA265_RS16550 +0.4 1.2 acyl carrier protein compare
CA265_RS10065 +0.4 2.8 competence protein compare
CA265_RS17710 +0.4 2.6 hypothetical protein compare
CA265_RS14840 +0.4 2.7 DUF4835 domain-containing protein compare
CA265_RS13390 +0.4 2.5 hypothetical protein compare
CA265_RS24625 +0.4 2.9 LacI family transcriptional regulator compare
CA265_RS15640 +0.4 2.9 sugar kinase compare
CA265_RS08745 +0.4 1.9 STAS/SEC14 domain-containing protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Arabinose in Pedobacter sp. GW460-11-11-14-LB5

For carbon source L-Arabinose across organisms