Experiment set2IT046 for Ralstonia sp. UNC404CL21Col

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS15775 -8.0 -5.5 4-carboxymuconolactone decarboxylase compare
ABZR87_RS13250 -7.8 -5.4 phosphoserine phosphatase SerB compare
ABZR87_RS08630 -7.5 -12.6 dihydroorotase compare
ABZR87_RS14505 -7.2 -5.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS15785 -7.0 -8.3 3-carboxy-cis,cis-muconate cycloisomerase conserved
ABZR87_RS01810 -6.9 -4.7 glutamate 5-kinase compare
ABZR87_RS15790 -6.5 -6.3 3-oxoadipyl-CoA thiolase compare
ABZR87_RS15800 -6.3 -12.2 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS09450 -6.3 -8.6 prephenate dehydratase compare
ABZR87_RS02570 -6.2 -22.5 glutamate synthase-related protein compare
ABZR87_RS02640 -6.2 -18.5 diaminopimelate decarboxylase compare
ABZR87_RS07360 -6.1 -16.2 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02160 -6.0 -7.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05200 -6.0 -20.1 homoserine O-acetyltransferase compare
ABZR87_RS12090 -5.9 -9.0 protocatechuate 3,4-dioxygenase subunit alpha compare
ABZR87_RS00200 -5.8 -5.6 phosphoadenylyl-sulfate reductase compare
ABZR87_RS02155 -5.8 -9.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS14500 -5.7 -15.2 tryptophan synthase subunit beta compare
ABZR87_RS14540 -5.6 -10.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02145 -5.6 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS22970 -5.6 -13.2 cystathionine gamma-synthase family protein compare
ABZR87_RS14490 -5.4 -10.4 tryptophan synthase subunit alpha compare
ABZR87_RS14530 -5.4 -9.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS01110 -5.3 -11.3 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS09445 -5.3 -14.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02595 -5.3 -10.4 shikimate kinase compare
ABZR87_RS02565 -5.3 -7.2 glutamate synthase subunit beta compare
ABZR87_RS14535 -5.3 -7.2 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS16170 -5.2 -8.0 argininosuccinate lyase compare
ABZR87_RS00190 -5.2 -12.6 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS01645 -5.2 -6.8 type II 3-dehydroquinate dehydratase compare
ABZR87_RS12085 -5.2 -14.0 protocatechuate 3,4-dioxygenase subunit beta conserved
ABZR87_RS02140 -5.1 -21.2 anthranilate synthase component I compare
ABZR87_RS13790 -5.1 -13.9 chorismate synthase compare
ABZR87_RS00185 -5.0 -3.5 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS07380 -5.0 -16.9 FAD/FMN-binding oxidoreductase compare
ABZR87_RS06770 -5.0 -9.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS04865 -4.9 -4.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS08625 -4.8 -4.7 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS00835 -4.8 -6.6 argininosuccinate synthase compare
ABZR87_RS09465 -4.8 -9.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00210 -4.7 -10.1 nitrite/sulfite reductase compare
ABZR87_RS09935 -4.7 -5.5 amino acid aminotransferase compare
ABZR87_RS11440 -4.6 -9.5 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS00325 -4.6 -3.2 peptidylprolyl isomerase compare
ABZR87_RS02590 -4.6 -11.8 3-dehydroquinate synthase compare
ABZR87_RS15795 -4.5 -7.3 CoA transferase subunit B compare
ABZR87_RS05170 -4.3 -4.2 acetylglutamate kinase compare
ABZR87_RS15780 -4.2 -6.0 3-oxoadipate enol-lactonase conserved
ABZR87_RS05590 -4.1 -4.7 orotate phosphoribosyltransferase compare
ABZR87_RS09515 -4.0 -2.8 cysteine synthase CysM compare
ABZR87_RS05025 -4.0 -2.7 rod shape-determining protein MreC compare
ABZR87_RS01605 -3.9 -10.9 shikimate dehydrogenase compare
ABZR87_RS07625 -3.9 -3.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS00205 -3.8 -4.1 DUF934 domain-containing protein compare
ABZR87_RS14950 -3.6 -4.2 acetolactate synthase small subunit compare
ABZR87_RS12080 -3.5 -4.9 pca operon transcription factor PcaQ compare
ABZR87_RS07635 -3.1 -3.0 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS05010 -3.1 -4.2 rod shape-determining protein RodA compare
ABZR87_RS10240 -3.1 -3.6 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS14955 -3.0 -5.4 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00220 -2.9 -9.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS04785 -2.8 -10.4 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS00195 -2.7 -4.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS12790 -2.7 -7.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00285 -2.6 -3.1 acetylornithine transaminase compare
ABZR87_RS10780 -2.5 -5.1 PD-(D/E)XK nuclease family protein compare
ABZR87_RS11125 -2.4 -8.0 cell division protein ZapE compare
ABZR87_RS16180 -2.4 -3.6 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS05015 -2.3 -7.1 penicillin-binding protein 2 compare
ABZR87_RS05100 -2.3 -9.4 RNA polymerase-binding protein DksA compare
ABZR87_RS06705 -2.1 -12.4 glutamate--cysteine ligase compare
ABZR87_RS10820 -2.1 -8.6 LysR substrate-binding domain-containing protein compare
ABZR87_RS08655 -2.1 -5.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS11065 -2.1 -6.2 nitrogen regulation protein NR(II) compare
ABZR87_RS12795 -2.1 -7.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS11015 -2.1 -7.2 amino-acid N-acetyltransferase compare
ABZR87_RS00435 -2.1 -8.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS10785 -2.1 -6.5 exodeoxyribonuclease V subunit beta compare
ABZR87_RS07620 -2.0 -4.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS08695 -1.9 -11.2 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS13300 -1.9 -8.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01565 -1.9 -10.2 NADP-dependent malic enzyme compare
ABZR87_RS09635 -1.8 -2.1 ribosome small subunit-dependent GTPase A compare
ABZR87_RS16185 -1.8 -2.3 dCTP deaminase compare
ABZR87_RS11760 -1.7 -1.7 membrane protein compare
ABZR87_RS00795 -1.7 -4.4 site-specific tyrosine recombinase XerD compare
ABZR87_RS11070 -1.7 -7.8 nitrogen regulation protein NR(I) compare
ABZR87_RS10610 -1.6 -2.6 inositol monophosphatase family protein compare
ABZR87_RS02575 -1.5 -4.9 transposase compare
ABZR87_RS07965 -1.5 -5.3 recombinase RecA compare
ABZR87_RS14495 -1.5 -3.7 site-specific DNA-methyltransferase compare
ABZR87_RS07050 -1.5 -1.7 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS12785 -1.5 -6.5 endopeptidase La compare
ABZR87_RS09460 -1.5 -6.0 prephenate dehydrogenase compare
ABZR87_RS11925 -1.5 -9.1 phosphoenolpyruvate synthase compare
ABZR87_RS07705 -1.4 -3.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS03930 -1.4 -2.6 glycine cleavage system protein GcvH compare
ABZR87_RS06495 -1.4 -3.0 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS14375 -1.4 -3.1 fumarate hydratase compare
ABZR87_RS06710 -1.3 -10.4 glutathione synthase compare
ABZR87_RS11815 -1.3 -6.7 [protein-PII] uridylyltransferase compare
ABZR87_RS00275 -1.3 -6.9 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS09500 -1.3 -3.9 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS01270 -1.3 -6.2 ATP-dependent DNA helicase RecG compare
ABZR87_RS08700 -1.3 -7.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS09895 -1.3 -2.0 DUF1841 family protein compare
ABZR87_RS02150 -1.3 -3.0 lysozyme inhibitor LprI family protein compare
ABZR87_RS11940 -1.2 -3.7 SsrA-binding protein SmpB compare
ABZR87_RS03075 -1.2 -6.6 AGE family epimerase/isomerase compare
ABZR87_RS05065 -1.2 -3.1 tyrosine recombinase XerC compare
ABZR87_RS06715 -1.2 -2.1 PTS sugar transporter subunit IIA compare
ABZR87_RS16960 -1.2 -3.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS22325 -1.2 -3.1 H-NS histone family protein compare
ABZR87_RS00385 -1.2 -1.7 response regulator transcription factor compare
ABZR87_RS08750 -1.2 -4.1 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS04125 -1.1 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS00215 -1.1 -2.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS02480 -1.1 -2.3 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS10195 -1.1 -3.6 signal peptidase I compare
ABZR87_RS01430 -1.1 -8.6 LysR family transcriptional regulator compare
ABZR87_RS13645 -1.1 -1.3 hypothetical protein compare
ABZR87_RS08660 -1.1 -4.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS15810 -1.0 -3.4 hypothetical protein compare
ABZR87_RS01285 -1.0 -1.4 preprotein translocase subunit YajC compare
ABZR87_RS00745 -1.0 -1.7 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS20690 -1.0 -1.4 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS06645 -1.0 -1.3 TlpA disulfide reductase family protein compare
ABZR87_RS21470 -1.0 -2.0 P-II family nitrogen regulator compare
ABZR87_RS09505 -1.0 -4.6 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS10120 -1.0 -1.1 YceD family protein compare
ABZR87_RS11770 -0.9 -4.7 succinyldiaminopimelate transaminase compare
ABZR87_RS05580 -0.9 -1.6 diaminopimelate epimerase compare
ABZR87_RS21365 -0.9 -1.2 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS16080 -0.9 -2.3 P-II family nitrogen regulator compare
ABZR87_RS07470 -0.9 -4.6 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01420 -0.9 -1.4 outer membrane protein assembly factor BamE compare
ABZR87_RS08235 -0.9 -1.2 hypothetical protein compare
ABZR87_RS22415 -0.9 -2.3 universal stress protein compare
ABZR87_RS08040 -0.9 -4.6 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS19970 -0.9 -1.7 hypothetical protein compare
ABZR87_RS13475 -0.9 -4.8 PAS domain S-box protein compare
ABZR87_RS23325 -0.9 -2.5 hypothetical protein compare
ABZR87_RS01225 -0.9 -2.1 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS21940 -0.8 -0.9 hypothetical protein compare
ABZR87_RS17080 -0.8 -1.9 DUF2946 family protein compare
ABZR87_RS15645 -0.8 -1.7 exodeoxyribonuclease VII small subunit compare
ABZR87_RS15405 -0.8 -2.5 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS10980 -0.8 -1.2 tRNA-Leu compare
ABZR87_RS15770 -0.8 -4.9 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS22585 -0.8 -1.8 methyl-accepting chemotaxis protein compare
ABZR87_RS01165 -0.8 -1.8 VOC family protein compare
ABZR87_RS08645 -0.8 -0.9 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS13290 -0.8 -4.0 3-ketoacyl-ACP reductase compare
ABZR87_RS07335 -0.8 -1.5 hypothetical protein compare
ABZR87_RS08795 -0.8 -3.7 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS06845 -0.8 -5.0 heme o synthase compare
ABZR87_RS15440 -0.8 -1.9 ribonuclease G compare
ABZR87_RS08670 -0.7 -5.0 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS10085 -0.7 -1.2 Rne/Rng family ribonuclease compare
ABZR87_RS15765 -0.7 -4.0 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS12345 -0.7 -1.0 dethiobiotin synthase compare
ABZR87_RS02485 -0.7 -0.8 MarC family protein compare
ABZR87_RS04240 -0.7 -1.5 heavy-metal-associated domain-containing protein compare
ABZR87_RS11420 -0.7 -1.3 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS20440 -0.7 -1.0 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS08205 -0.7 -1.0 hypothetical protein compare
ABZR87_RS06855 -0.7 -2.0 RNA polymerase sigma factor RpoH compare
ABZR87_RS16125 -0.7 -3.5 heme biosynthesis protein HemY compare
ABZR87_RS07005 -0.7 -1.3 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS21795 -0.7 -2.7 NUDIX domain-containing protein compare
ABZR87_RS14675 -0.7 -0.8 glyoxalase compare
ABZR87_RS14745 -0.7 -1.2 urease subunit gamma compare
ABZR87_RS21095 -0.7 -0.7 TRAP transporter small permease compare
ABZR87_RS00830 -0.7 -1.3 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS03420 -0.7 -1.1 type II secretion system minor pseudopilin GspI compare
ABZR87_RS01425 -0.7 -1.9 ferric iron uptake transcriptional regulator compare
ABZR87_RS13495 -0.7 -2.9 exodeoxyribonuclease III compare
ABZR87_RS12815 -0.6 -2.6 siderophore ferric iron reductase compare
ABZR87_RS14575 -0.6 -1.8 GntR family transcriptional regulator compare
ABZR87_RS18920 -0.6 -2.6 Rieske (2Fe-2S) protein compare
ABZR87_RS13400 -0.6 -0.9 hypothetical protein compare
ABZR87_RS18630 -0.6 -1.5 class II fumarate hydratase compare
ABZR87_RS08650 -0.6 -4.1 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS15755 -0.6 -2.0 ABC transporter ATP-binding protein conserved
ABZR87_RS19675 -0.6 -1.1 cold-shock protein compare
ABZR87_RS12990 -0.6 -1.7 phage tail protein compare
ABZR87_RS06405 -0.6 -0.7 hypothetical protein compare
ABZR87_RS01245 -0.6 -2.2 Dps family protein compare
ABZR87_RS21990 -0.6 -2.6 hypothetical protein compare
ABZR87_RS05205 -0.6 -2.0 methionine biosynthesis protein MetW compare
ABZR87_RS07760 -0.6 -1.2 HlyC/CorC family transporter compare
ABZR87_RS08585 -0.6 -1.5 chemotaxis protein CheW compare
ABZR87_RS12100 -0.6 -2.3 DsbA family protein compare
ABZR87_RS17115 -0.6 -1.6 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS15485 -0.6 -2.5 glycosyltransferase family 2 protein compare
ABZR87_RS10805 -0.6 -2.2 antibiotic biosynthesis monooxygenase compare
ABZR87_RS00910 -0.6 -1.6 hypothetical protein compare
ABZR87_RS23215 -0.6 -2.5 D-xylose ABC transporter substrate-binding protein compare
ABZR87_RS06290 -0.6 -2.5 HAD family phosphatase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Protocatechuic Acid in Ralstonia sp. UNC404CL21Col

For carbon source Protocatechuic Acid across organisms