Experiment set2IT045 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Sodium nitrate 250 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS17505 -3.7 -3.6 preprotein translocase subunit SecG compare
LRK54_RS14825 -3.6 -2.5 protease HtpX compare
LRK54_RS14670 -3.5 -3.3 NrsF family protein compare
LRK54_RS00440 -3.5 -4.8 high frequency lysogenization protein HflD compare
LRK54_RS14590 -3.4 -5.1 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02440 -3.3 -2.3 RNA polymerase-binding protein DksA compare
LRK54_RS11975 -3.2 -4.4 SLC13 family permease compare
LRK54_RS04350 -3.1 -3.7 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS00345 -3.1 -4.7 TraB/GumN family protein compare
LRK54_RS14695 -3.1 -13.3 rhomboid family intramembrane serine protease compare
LRK54_RS12295 -3.1 -2.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS00620 -3.0 -9.1 FtsH protease activity modulator HflK compare
LRK54_RS12860 -3.0 -4.1 RNase adapter RapZ compare
LRK54_RS06685 -3.0 -12.4 TolC family outer membrane protein compare
LRK54_RS04585 -2.9 -4.5 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS02895 -2.9 -9.6 rhomboid family intramembrane serine protease compare
LRK54_RS03110 -2.9 -9.5 nucleotidyltransferase family protein compare
LRK54_RS04720 -2.9 -6.1 phosphoribosylformylglycinamidine synthase compare
LRK54_RS13760 -2.9 -7.6 trypsin-like peptidase domain-containing protein compare
LRK54_RS05415 -2.9 -6.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS16735 -2.9 -15.3 endopeptidase La compare
LRK54_RS12010 -2.9 -10.1 response regulator transcription factor compare
LRK54_RS06720 -2.8 -13.1 glycosyltransferase compare
LRK54_RS05650 -2.8 -1.9 ABC transporter ATP-binding protein compare
LRK54_RS02535 -2.8 -4.3 50S ribosomal protein L9 compare
LRK54_RS03290 -2.8 -1.9 RIP metalloprotease RseP compare
LRK54_RS16940 -2.8 -5.0 RNA polymerase sigma factor RpoE compare
LRK54_RS05440 -2.8 -10.2 hypothetical protein compare
LRK54_RS10925 -2.8 -2.1 cell division ATP-binding protein FtsE compare
LRK54_RS08760 -2.8 -2.7 transaldolase compare
LRK54_RS00615 -2.7 -6.7 protease modulator HflC compare
LRK54_RS06470 -2.7 -10.4 carboxy terminal-processing peptidase compare
LRK54_RS05630 -2.7 -6.6 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS11170 -2.6 -4.0 NADP-dependent malic enzyme compare
LRK54_RS18050 -2.6 -12.0 lipopolysaccharide assembly protein LapB compare
LRK54_RS05655 -2.6 -1.8 ABC transporter permease compare
LRK54_RS11385 -2.6 -5.8 co-chaperone DjlA compare
LRK54_RS06885 -2.6 -6.7 rhodanese-like domain-containing protein compare
LRK54_RS16655 -2.6 -2.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS12865 -2.6 -9.2 HPr(Ser) kinase/phosphatase compare
LRK54_RS05985 -2.6 -1.8 response regulator transcription factor compare
LRK54_RS03125 -2.6 -1.8 preprotein translocase subunit YajC compare
LRK54_RS16660 -2.6 -9.9 VTT domain-containing protein compare
LRK54_RS06755 -2.5 -17.7 LTA synthase family protein compare
LRK54_RS00085 -2.5 -1.7 tetratricopeptide repeat protein compare
LRK54_RS11290 -2.5 -1.7 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS00675 -2.5 -11.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS02855 -2.5 -4.8 type I restriction-modification system subunit M compare
LRK54_RS03895 -2.5 -13.8 lipopolysaccharide biosynthesis protein compare
LRK54_RS16665 -2.5 -11.2 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS00680 -2.5 -11.0 TerC family protein compare
LRK54_RS11725 -2.5 -2.6 PilZ domain-containing protein compare
LRK54_RS05640 -2.5 -9.2 GDP-mannose 4,6-dehydratase compare
LRK54_RS16865 -2.4 -9.5 protein phosphatase 2C domain-containing protein compare
LRK54_RS10955 -2.4 -14.6 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS17270 -2.4 -3.6 DNA translocase FtsK compare
LRK54_RS12945 -2.4 -8.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS18055 -2.4 -5.0 glycosyltransferase family 4 protein compare
LRK54_RS00405 -2.4 -5.8 FHA domain-containing protein compare
LRK54_RS06675 -2.3 -8.8 TetR/AcrR family transcriptional regulator compare
LRK54_RS06785 -2.3 -1.6 protein-disulfide reductase DsbD compare
LRK54_RS12855 -2.3 -5.9 PTS fructose transporter subunit IIA compare
LRK54_RS12190 -2.3 -7.7 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS09155 -2.3 -3.9 SPOR domain-containing protein compare
LRK54_RS02445 -2.3 -2.7 membrane protein insertion efficiency factor YidD compare
LRK54_RS06415 -2.3 -2.1 hypothetical protein compare
LRK54_RS05535 -2.3 -6.4 glycosyltransferase family 2 protein compare
LRK54_RS00670 -2.3 -4.8 OmpA family protein compare
LRK54_RS12460 -2.2 -2.2 hypothetical protein compare
LRK54_RS12670 -2.2 -9.0 glycosyltransferase compare
LRK54_RS02090 -2.2 -14.3 NAD-glutamate dehydrogenase compare
LRK54_RS03710 -2.2 -8.5 tetratricopeptide repeat protein compare
LRK54_RS05785 -2.2 -7.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS14465 -2.2 -6.4 septum site-determining protein MinC compare
LRK54_RS10930 -2.2 -12.3 permease-like cell division protein FtsX compare
LRK54_RS05740 -2.2 -6.6 phosphoglycerate kinase compare
LRK54_RS15105 -2.2 -7.1 polynucleotide adenylyltransferase PcnB compare
LRK54_RS05540 -2.2 -4.7 glycosyltransferase family 2 protein compare
LRK54_RS05980 -2.1 -4.3 ATP-binding protein compare
LRK54_RS16755 -2.1 -4.7 SurA N-terminal domain-containing protein compare
LRK54_RS05610 -2.1 -9.1 GtrA family protein compare
LRK54_RS10355 -2.1 -3.2 threonine synthase compare
LRK54_RS06425 -2.1 -2.8 ribonucleoside-diphosphate reductase compare
LRK54_RS10065 -2.1 -3.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS16950 -2.1 -14.4 Do family serine endopeptidase compare
LRK54_RS11175 -2.1 -8.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS12595 -2.1 -4.9 (2Fe-2S)-binding protein compare
LRK54_RS12185 -2.1 -12.3 penicillin-binding protein activator compare
LRK54_RS15035 -2.1 -6.5 M48 family metalloprotease compare
LRK54_RS14845 -2.0 -1.3 LysR family transcriptional regulator compare
LRK54_RS16720 -2.0 -7.5 trigger factor compare
LRK54_RS06490 -2.0 -11.9 D-alanyl-D-alanine carboxypeptidase compare
LRK54_RS02275 -2.0 -4.0 enoyl-CoA hydratase-related protein compare
LRK54_RS03930 -2.0 -10.6 glycosyltransferase family 2 protein compare
LRK54_RS05635 -2.0 -8.8 dehydrogenase compare
LRK54_RS07085 -2.0 -14.1 heme o synthase compare
LRK54_RS05615 -2.0 -11.8 hypothetical protein compare
LRK54_RS16730 -2.0 -1.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS00080 -1.9 -10.8 helix-turn-helix domain-containing protein compare
LRK54_RS00805 -1.9 -3.4 segregation/condensation protein A compare
LRK54_RS03675 -1.9 -2.6 redox-regulated ATPase YchF compare
LRK54_RS16050 -1.9 -1.2 tetratricopeptide repeat protein compare
LRK54_RS05665 -1.9 -4.4 dTDP-glucose 4,6-dehydratase compare
LRK54_RS11055 -1.9 -11.3 lipid-binding SYLF domain-containing protein compare
LRK54_RS10950 -1.9 -11.3 S41 family peptidase compare
LRK54_RS06420 -1.9 -2.4 hypothetical protein compare
LRK54_RS02950 -1.9 -11.1 sensor histidine kinase compare
LRK54_RS00425 -1.8 -9.7 ATP-dependent Clp protease adapter ClpS compare
LRK54_RS01685 -1.8 -10.7 tryptophan synthase subunit beta compare
LRK54_RS09110 -1.8 -13.6 phospholipase D family protein compare
LRK54_RS02460 -1.8 -8.7 phosphoglycolate phosphatase compare
LRK54_RS14460 -1.8 -7.8 septum site-determining protein MinD compare
LRK54_RS05495 -1.8 -4.9 met regulon transcriptional regulator MetJ compare
LRK54_RS12015 -1.8 -11.5 HAMP domain-containing histidine kinase compare
LRK54_RS09000 -1.8 -9.6 HAMP domain-containing histidine kinase compare
LRK54_RS07120 -1.8 -13.6 cytochrome c oxidase subunit I compare
LRK54_RS00420 -1.7 -12.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS02435 -1.7 -13.9 TonB-dependent siderophore receptor compare
LRK54_RS02380 -1.7 -5.8 argininosuccinate lyase compare
LRK54_RS10185 -1.7 -12.4 RDD family protein compare
LRK54_RS01680 -1.7 -5.9 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS05670 -1.7 -5.4 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS07195 -1.7 -1.1 hypothetical protein compare
LRK54_RS09805 -1.7 -5.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS03405 -1.7 -7.2 ribonuclease G compare
LRK54_RS00395 -1.7 -3.2 prephenate dehydratase compare
LRK54_RS15325 -1.7 -1.1 hypothetical protein compare
LRK54_RS05200 -1.7 -3.1 hypothetical protein compare
LRK54_RS02945 -1.6 -6.7 response regulator compare
LRK54_RS02495 -1.6 -4.8 50S ribosomal protein L19 compare
LRK54_RS03185 -1.6 -5.7 phosphoglycerate dehydrogenase compare
LRK54_RS01280 -1.6 -2.4 MBL fold metallo-hydrolase compare
LRK54_RS13780 -1.6 -6.1 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS16930 -1.6 -9.2 hypothetical protein compare
LRK54_RS00815 -1.6 -5.5 pseudouridine synthase compare
LRK54_RS05645 -1.6 -11.6 glycosyltransferase compare
LRK54_RS04710 -1.6 -3.7 glycosyltransferase family 2 protein compare
LRK54_RS01350 -1.6 -7.2 SPOR domain-containing protein compare
LRK54_RS00305 -1.6 -9.6 asparagine synthase B compare
LRK54_RS18060 -1.6 -5.3 polysaccharide biosynthesis protein compare
LRK54_RS07570 -1.6 -2.4 monovalent cation/H(+) antiporter subunit G compare
LRK54_RS01580 -1.5 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS00690 -1.5 -9.2 2-methylcitrate synthase compare
LRK54_RS16935 -1.5 -10.8 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS08585 -1.5 -12.6 RimK family alpha-L-glutamate ligase compare
LRK54_RS11565 -1.5 -2.3 anthranilate phosphoribosyltransferase compare
LRK54_RS00935 -1.5 -8.6 sulfite exporter TauE/SafE family protein compare
LRK54_RS09760 -1.5 -5.4 3-oxoacyl-ACP reductase FabG compare
LRK54_RS07020 -1.5 -2.1 ABC transporter permease compare
LRK54_RS13800 -1.5 -10.0 DUF1631 domain-containing protein compare
LRK54_RS16600 -1.4 -7.6 aminopeptidase P family protein compare
LRK54_RS16740 -1.4 -3.1 HU family DNA-binding protein compare
LRK54_RS16955 -1.4 -9.4 translation elongation factor 4 compare
LRK54_RS09775 -1.4 -8.1 beta-ketoacyl synthase chain length factor compare
LRK54_RS15020 -1.4 -10.2 polyphosphate kinase 1 compare
LRK54_RS11830 -1.4 -10.9 penicillin-binding protein 1A compare
LRK54_RS07060 -1.4 -6.1 DedA family protein compare
LRK54_RS12305 -1.4 -7.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS13830 -1.4 -6.3 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS03105 -1.4 -8.3 phosphotransferase compare
LRK54_RS09345 -1.4 -1.8 ATP-binding protein compare
LRK54_RS10150 -1.4 -1.1 DNA topoisomerase I compare
LRK54_RS04655 -1.4 -2.9 peptide deformylase compare
LRK54_RS13540 -1.4 -1.8 flagellar biosynthetic protein FliO compare
LRK54_RS02325 -1.3 -2.7 SDR family oxidoreductase compare
LRK54_RS12590 -1.3 -8.8 molybdopterin-dependent oxidoreductase compare
LRK54_RS09655 -1.3 -4.3 6-carboxytetrahydropterin synthase QueD compare
LRK54_RS07090 -1.3 -9.5 COX15/CtaA family protein compare
LRK54_RS06820 -1.3 -2.5 Fis family transcriptional regulator compare
LRK54_RS11375 -1.3 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS05550 -1.3 -2.4 FAD-binding protein compare
LRK54_RS04615 -1.3 -3.9 transcriptional regulator NrdR compare
LRK54_RS02870 -1.3 -3.7 DUF502 domain-containing protein compare
LRK54_RS05775 -1.3 -6.7 pyruvate kinase compare
LRK54_RS04630 -1.3 -1.2 energy-dependent translational throttle protein EttA compare
LRK54_RS06495 -1.3 -8.3 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS16875 -1.3 -9.3 kinase/pyrophosphorylase compare
LRK54_RS08775 -1.3 -1.8 GNAT family N-acetyltransferase compare
LRK54_RS09740 -1.3 -8.4 acyltransferase compare
LRK54_RS09770 -1.3 -4.9 glycosyltransferase family 2 protein compare
LRK54_RS08670 -1.2 -7.1 LacI family transcriptional regulator compare
LRK54_RS05725 -1.2 -4.5 DUF4398 domain-containing protein compare
LRK54_RS15935 -1.2 -6.2 rRNA pseudouridine synthase compare
LRK54_RS02960 -1.2 -7.5 ABC transporter permease compare
LRK54_RS01395 -1.2 -1.0 arsenate reductase ArsC compare
LRK54_RS09825 -1.2 -6.3 alpha/beta hydrolase compare
LRK54_RS11285 -1.2 -3.3 ABC transporter ATP-binding protein compare
LRK54_RS04625 -1.2 -6.3 serine hydroxymethyltransferase compare
LRK54_RS00695 -1.2 -3.9 methylisocitrate lyase compare
LRK54_RS12950 -1.2 -5.7 DUF2066 domain-containing protein compare
LRK54_RS03925 -1.2 -7.1 glycosyltransferase family 4 protein compare
LRK54_RS01410 -1.2 -8.0 ABC transporter ATP-binding protein/permease compare
LRK54_RS02285 -1.2 -6.6 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS11745 -1.1 -6.2 ribonuclease PH compare
LRK54_RS08750 -1.1 -3.7 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS03890 -1.1 -9.9 hypothetical protein compare
LRK54_RS01585 -1.1 -3.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS02185 -1.1 -3.1 exodeoxyribonuclease V subunit alpha compare
LRK54_RS04050 -1.1 -6.2 glycoside hydrolase compare
LRK54_RS02180 -1.1 -5.1 UvrD-helicase domain-containing protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium nitrate in Rhodanobacter denitrificans FW104-10B01

For stress Sodium nitrate across organisms