Experiment set2IT045 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_09950 -4.4 -5.2 aspartate ammonia-lyase compare
AO353_12090 -4.2 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20695 -4.1 -6.2 O-succinylhomoserine sulfhydrylase compare
AO353_09960 -4.0 -8.1 L-asparaginase (EC 3.5.1.1) (from data) conserved
AO353_08185 -3.8 -9.6 methionine biosynthesis protein MetW compare
AO353_09945 -3.6 -5.5 LysR family transcriptional regulator compare
AO353_10670 -3.5 -8.2 shikimate dehydrogenase compare
AO353_13165 -3.5 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07220 -3.5 -9.0 anthranilate synthase compare
AO353_12085 -3.5 -8.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20665 -3.5 -11.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_13070 -3.5 -8.9 phosphoserine phosphatase compare
AO353_02070 -3.4 -7.7 prephenate dehydratase compare
AO353_20635 -3.3 -12.2 3-isopropylmalate dehydrogenase compare
AO353_05115 -3.3 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07215 -3.3 -7.9 anthranilate phosphoribosyltransferase compare
AO353_02075 -3.3 -11.3 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00620 -3.3 -3.8 cytochrome C oxidase Cbb3 compare
AO353_14505 -3.3 -13.6 ketol-acid reductoisomerase compare
AO353_14400 -3.3 -4.4 Fis family transcriptional regulator compare
AO353_07210 -3.2 -6.5 indole-3-glycerol-phosphate synthase compare
AO353_07230 -3.2 -16.9 anthranilate synthase compare
AO353_08180 -3.2 -14.0 homoserine O-acetyltransferase compare
AO353_14500 -3.2 -6.1 acetolactate synthase 3 regulatory subunit compare
AO353_08685 -3.1 -9.6 N-acetylglutamate synthase compare
AO353_08475 -3.1 -10.0 phosphoserine phosphatase compare
AO353_10710 -3.1 -4.7 tryptophan synthase subunit beta compare
AO353_09955 -3.1 -16.2 sodium:alanine symporter conserved
AO353_18715 -3.0 -2.5 histidine kinase compare
AO353_08345 -3.0 -10.1 dihydroxy-acid dehydratase compare
AO353_04155 -3.0 -13.1 ornithine carbamoyltransferase compare
AO353_12070 -3.0 -10.0 imidazoleglycerol-phosphate dehydratase compare
AO353_12365 -2.9 -5.2 phosphoribosyl-AMP cyclohydrolase compare
AO353_05110 -2.9 -11.5 histidinol dehydrogenase compare
AO353_08510 -2.9 -5.8 3-phosphoglycerate dehydrogenase compare
AO353_20620 -2.9 -7.9 isopropylmalate isomerase compare
AO353_20625 -2.9 -5.7 3-isopropylmalate dehydratase compare
AO353_12075 -2.9 -8.9 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07155 -2.8 -7.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_14495 -2.8 -11.3 acetolactate synthase 3 catalytic subunit compare
AO353_22800 -2.8 -4.1 sulfite reductase compare
AO353_14115 -2.8 -7.3 gamma-glutamyl kinase compare
AO353_09240 -2.8 -3.3 acetylglutamate kinase compare
AO353_12115 -2.8 -2.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_20175 -2.7 -4.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_08165 -2.6 -3.5 pyrroline-5-carboxylate reductase compare
AO353_08015 -2.6 -8.2 5,10-methylenetetrahydrofolate reductase compare
AO353_04105 -2.6 -9.1 argininosuccinate synthase compare
AO353_18540 -2.6 -3.4 pseudouridine synthase compare
AO353_00430 -2.5 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_10455 -2.5 -1.7 tRNA modification GTPase MnmE compare
AO353_02250 -2.5 -4.9 chorismate synthase compare
AO353_14370 -2.5 -7.5 glucose-6-phosphate isomerase compare
AO353_15925 -2.5 -11.4 2-isopropylmalate synthase compare
AO353_15250 -2.5 -3.7 cytochrome B compare
AO353_19060 -2.5 -6.2 CysB family transcriptional regulator compare
AO353_05080 -2.5 -12.2 sulfate adenylyltransferase compare
AO353_12345 -2.5 -3.3 twin-arginine protein translocation system subunit TatC compare
AO353_05075 -2.4 -10.9 adenylylsulfate kinase compare
AO353_12360 -2.4 -9.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_02685 -2.4 -4.9 phosphoribosylglycinamide formyltransferase compare
AO353_12500 -2.2 -2.1 shikimate kinase compare
AO353_09000 -2.2 -6.2 argininosuccinate lyase compare
AO353_06040 -2.1 -4.0 exodeoxyribonuclease V subunit alpha compare
AO353_03580 -2.1 -4.3 ATP-dependent DNA helicase RuvB compare
AO353_00650 -2.1 -3.8 cytochrome biogenesis protein compare
AO353_08780 -2.1 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_07075 -2.1 -5.3 elongation factor Tu compare
AO353_03585 -2.0 -3.3 ATP-dependent DNA helicase RuvA compare
AO353_15170 -2.0 -3.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_01410 -2.0 -4.3 ribonuclease E compare
AO353_11775 -2.0 -7.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_03590 -1.9 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_11165 -1.9 -10.0 hypothetical protein compare
AO353_12460 -1.9 -8.3 malate dehydrogenase compare
AO353_06495 -1.9 -4.5 gamma-glutamyl phosphate reductase compare
AO353_16280 -1.9 -7.5 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_02005 -1.8 -2.3 hypothetical protein compare
AO353_00825 -1.8 -3.8 porin compare
AO353_16285 -1.8 -8.5 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) conserved
AO353_00610 -1.8 -3.0 cytochrome C oxidase Cbb3 compare
AO353_07355 -1.8 -5.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_28425 -1.8 -4.2 TetR family transcriptional regulator compare
AO353_08880 -1.7 -3.0 exopolyphosphatase compare
AO353_20095 -1.7 -6.2 histidine kinase compare
AO353_16290 -1.7 -10.1 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) conserved
AO353_03290 -1.7 -2.0 peptide deformylase compare
AO353_27650 -1.6 -4.8 cell division protein FtsK compare
AO353_03615 -1.6 -3.0 cold-shock protein compare
AO353_16270 -1.6 -12.0 histidine kinase conserved
AO353_14940 -1.6 -3.9 malate:quinone oxidoreductase compare
AO353_16805 -1.6 -5.4 recombinase RecA compare
AO353_14405 -1.6 -9.5 ATPase compare
AO353_00630 -1.5 -6.3 (Fe-S)-binding protein compare
AO353_10705 -1.5 -4.2 tryptophan synthase subunit alpha compare
AO353_16940 -1.5 -5.2 deoxycytidine triphosphate deaminase compare
AO353_03520 -1.5 -2.9 hypothetical protein compare
AO353_09135 -1.5 -2.3 cytochrome C compare
AO353_03795 -1.4 -4.2 fumarate hydratase compare
AO353_11770 -1.4 -2.1 molecular chaperone Hsp33 compare
AO353_16265 -1.4 -5.5 Fis family transcriptional regulator compare
AO353_05105 -1.4 -8.2 histidinol-phosphate aminotransferase compare
AO353_27685 -1.4 -4.3 cold-shock protein compare
AO353_10040 -1.4 -7.2 transcriptional regulator compare
AO353_08130 -1.4 -2.7 uracil phosphoribosyltransferase compare
AO353_04565 -1.4 -4.8 nucleoid-associated protein compare
AO353_09890 -1.4 -4.6 phosphate ABC transporter ATP-binding protein compare
AO353_18890 -1.4 -5.1 cytochrome C compare
AO353_00105 -1.3 -2.2 hypothetical protein compare
AO353_10445 -1.3 -1.9 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_08485 -1.3 -9.1 threonine dehydratase compare
AO353_13140 -1.3 -4.7 tRNA dimethylallyltransferase compare
AO353_05690 -1.3 -3.1 SsrA-binding protein compare
AO353_29215 -1.3 -2.2 alpha/beta hydrolase compare
AO353_00750 -1.3 -3.5 GntR family transcriptional regulator compare
AO353_13395 -1.3 -2.6 protein hupE compare
AO353_00605 -1.3 -5.5 cytochrome C oxidase Cbb3 compare
AO353_19360 -1.2 -2.5 peroxiredoxin compare
AO353_16745 -1.2 -2.3 ArsR family transcriptional regulator compare
AO353_20800 -1.2 -2.1 hypothetical protein compare
AO353_13245 -1.2 -5.0 hypothetical protein compare
AO353_09720 -1.2 -1.7 hypothetical protein compare
AO353_05800 -1.2 -4.2 hypothetical protein compare
AO353_09040 -1.2 -1.9 diaminopimelate epimerase compare
AO353_06045 -1.2 -5.1 exodeoxyribonuclease V subunit beta compare
AO353_05230 -1.1 -6.0 ribonuclease G compare
AO353_00835 -1.1 -5.0 transporter compare
AO353_01915 -1.1 -2.0 GlcG protein compare
AO353_25335 -1.1 -1.7 malonate decarboxylase acyl carrier protein compare
AO353_13640 -1.1 -3.7 histidine kinase compare
AO353_02720 -1.1 -4.1 cysteine synthase compare
AO353_18285 -1.1 -2.9 3-phosphoglycerate kinase compare
AO353_12935 -1.0 -3.2 glycosyltransferase compare
AO353_09260 -1.0 -4.3 ribonuclease PH compare
AO353_13155 -1.0 -3.1 hypothetical protein compare
AO353_05340 -1.0 -3.3 histidine kinase compare
AO353_12105 -1.0 -4.4 peptidase S41 compare
AO353_11530 -1.0 -5.8 diguanylate cyclase compare
AO353_05420 -1.0 -1.5 peptide chain release factor 3 compare
AO353_14775 -1.0 -4.2 hypothetical protein compare
AO353_12930 -1.0 -2.4 GlcNAc-PI de-N-acetylase compare
AO353_08980 -1.0 -2.1 heme biosynthesis operon protein HemX compare
AO353_27675 -1.0 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_23910 -1.0 -2.4 response regulator compare
AO353_14740 -0.9 -2.4 GTP-binding protein compare
AO353_16260 -0.9 -6.3 hypothetical protein compare
AO353_16425 -0.9 -1.2 Fe-S metabolism protein SufE compare
AO353_02060 -0.9 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_19530 -0.9 -1.7 quinohemoprotein amine dehydrogenase compare
AO353_00510 -0.9 -3.7 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_17540 -0.9 -2.0 helicase compare
AO353_20200 -0.9 -3.0 peptidylprolyl isomerase compare
AO353_08265 -0.9 -3.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_16835 -0.9 -1.2 LuxR family transcriptional regulator compare
AO353_20830 -0.9 -5.0 LacI family transcriptional regulator compare
AO353_21055 -0.9 -3.5 glycosyl hydrolase compare
AO353_03630 -0.9 -6.3 porin compare
AO353_26945 -0.9 -1.7 transcriptional regulator compare
AO353_06050 -0.9 -4.1 exodeoxyribonuclease V subunit gamma compare
AO353_10430 -0.9 -2.6 chromosome partitioning protein ParB compare
AO353_20170 -0.9 -3.1 trigger factor compare
AO353_08505 -0.9 -5.7 FAD-linked oxidase compare
AO353_20185 -0.9 -4.0 DNA-binding protein compare
AO353_14585 -0.9 -3.5 ribosomal-protein-alanine acetyltransferase compare
AO353_04520 -0.9 -3.5 elongation factor 4 compare
AO353_09905 -0.9 -5.1 phosphate-binding protein compare
AO353_11455 -0.9 -1.9 hypothetical protein compare
AO353_28910 -0.9 -2.5 hypothetical protein compare
AO353_11750 -0.9 -2.0 ATPase compare
AO353_06720 -0.9 -1.8 NrdR family transcriptional regulator compare
AO353_23495 -0.9 -1.9 SAM-dependent methyltransferase compare
AO353_09895 -0.8 -4.5 phosphate ABC transporter permease compare
AO353_10435 -0.8 -5.1 chromosome partitioning protein compare
AO353_16810 -0.8 -2.7 recombinase RecX compare
AO353_02640 -0.8 -1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_02270 -0.8 -3.2 isochorismatase compare
AO353_23590 -0.8 -1.4 ArsR family transcriptional regulator compare
AO353_04355 -0.8 -1.3 homoserine dehydrogenase compare
AO353_05325 -0.8 -3.1 GntR family transcriptional regulator compare
AO353_10825 -0.8 -5.8 hypothetical protein compare
AO353_13080 -0.8 -4.4 thiosulfate sulfurtransferase compare
AO353_20805 -0.8 -5.8 glutaminase compare
AO353_21615 -0.8 -5.2 methionine synthase compare
AO353_02810 -0.8 -4.3 histidine kinase compare
AO353_06850 -0.8 -2.9 MFS transporter compare
AO353_03710 -0.8 -1.8 formyltetrahydrofolate deformylase compare
AO353_28295 -0.8 -1.9 GNAT family acetyltransferase compare
AO353_06585 -0.8 -3.6 hypothetical protein compare
AO353_13160 -0.8 -1.6 membrane protease HflC compare
AO353_10950 -0.8 -5.1 thiol:disulfide interchange protein compare
AO353_20565 -0.8 -1.4 tRNA-Ala compare
AO353_04065 -0.8 -2.7 electron transporter RnfB compare
AO353_08115 -0.8 -3.2 energy transducer TonB compare
AO353_15785 -0.8 -4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_21625 -0.7 -1.5 Fe/S biogenesis protein NfuA compare
AO353_20540 -0.7 -3.9 aromatic amino acid aminotransferase compare
AO353_25340 -0.7 -2.9 triphosphoribosyl-dephospho-CoA synthase MdcB compare
AO353_03020 -0.7 -3.9 arginine N-succinyltransferase compare
AO353_00265 -0.7 -2.3 hypothetical protein compare
AO353_24535 -0.7 -1.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Asparagine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Asparagine across organisms