Experiment set2IT045 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_4038 -2.2 -3.6 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2734 -2.1 -2.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2177 -2.0 -1.4 FIG00953342: hypothetical protein compare
Pf1N1B4_2401 -1.8 -2.2 Lipoprotein, putative compare
Pf1N1B4_2005 -1.8 -2.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_1057 -1.7 -3.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_769 -1.6 -6.9 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_5512 -1.5 -2.6 hypothetical protein compare
Pf1N1B4_3590 -1.5 -6.3 hypothetical protein compare
Pf1N1B4_2874 -1.5 -2.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_883 -1.4 -2.2 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_1781 -1.4 -2.6 hypothetical protein compare
Pf1N1B4_2054 -1.4 -3.7 FIG00964469: hypothetical protein compare
Pf1N1B4_4368 -1.4 -2.8 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_683 -1.3 -3.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_644 -1.3 -2.2 Cold shock protein CspC compare
Pf1N1B4_4299 -1.3 -3.7 sensor histidine kinase compare
Pf1N1B4_5949 -1.3 -2.4 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_5073 -1.3 -3.2 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_2026 -1.2 -3.0 Transcriptional regulator compare
Pf1N1B4_2486 -1.2 -2.4 hypothetical protein compare
Pf1N1B4_3833 -1.2 -6.2 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5769 -1.2 -2.1 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_4030 -1.2 -2.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4040 -1.2 -3.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_4571 -1.2 -2.4 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_2037 -1.2 -3.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_5575 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_5448 -1.1 -2.1 hypothetical protein compare
Pf1N1B4_3775 -1.1 -1.3 FIG00956876: hypothetical protein compare
Pf1N1B4_507 -1.1 -1.8 FIG00956448: hypothetical protein compare
Pf1N1B4_4303 -1.1 -3.8 DipZ protein compare
Pf1N1B4_4035 -1.1 -1.7 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_3547 -1.1 -2.3 DNA-binding response regulator compare
Pf1N1B4_3546 -1.1 -1.8 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_3563 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_3812 -1.1 -5.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_4051 -1.1 -3.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_5624 -1.1 -3.0 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_1191 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_3591 -1.1 -5.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_479 -1.1 -2.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_4594 -1.1 -2.3 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_1958 -1.0 -1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5659 -1.0 -6.7 NfuA Fe-S protein maturation compare
Pf1N1B4_4553 -1.0 -2.2 FIG00959354: hypothetical protein compare
Pf1N1B4_2878 -1.0 -5.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2453 -1.0 -1.3 hypothetical protein compare
Pf1N1B4_2209 -1.0 -5.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_5519 -1.0 -3.0 hypothetical protein compare
Pf1N1B4_1570 -1.0 -2.7 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_5737 -1.0 -2.4 Nitrate/nitrite transporter compare
Pf1N1B4_3093 -1.0 -1.6 Outer membrane protein H precursor compare
Pf1N1B4_5279 -1.0 -2.6 hypothetical protein compare
Pf1N1B4_656 -1.0 -5.3 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_2465 -1.0 -1.8 Two-component response regulator CreB compare
Pf1N1B4_3143 -1.0 -2.2 RecA protein compare
Pf1N1B4_4028 -1.0 -2.9 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2384 -0.9 -6.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2773 -0.9 -3.2 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_2176 -0.9 -2.3 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_4134 -0.9 -1.8 Na+ driven multidrug efflux pump compare
Pf1N1B4_1568 -0.9 -2.1 Twin-arginine translocation protein TatB compare
Pf1N1B4_5591 -0.9 -1.4 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_652 -0.9 -5.9 Sensory box histidine kinase compare
Pf1N1B4_1892 -0.9 -2.9 ABC transporter ATP-binding protein USSDB6B compare
Pf1N1B4_2856 -0.9 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3054 -0.9 -2.6 FIG00953063: hypothetical protein compare
Pf1N1B4_1617 -0.9 -4.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2477 -0.9 -3.2 response regulator compare
Pf1N1B4_3636 -0.9 -1.5 FIG00953562: hypothetical protein compare
Pf1N1B4_350 -0.9 -4.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3467 -0.9 -1.6 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_1792 -0.9 -2.3 Taurine transport ATP-binding protein TauB compare
Pf1N1B4_2552 -0.9 -2.5 OsmC/Ohr family protein compare
Pf1N1B4_1317 -0.9 -1.9 Sensor histidine kinase/response regulator compare
Pf1N1B4_2140 -0.9 -1.9 FIG00957579: hypothetical protein compare
Pf1N1B4_3508 -0.9 -2.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_4509 -0.8 -1.5 Aldose 1-epimerase compare
Pf1N1B4_2178 -0.8 -1.6 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_4078 -0.8 -2.9 GDP-mannose pyrophosphatase YffH compare
Pf1N1B4_4740 -0.8 -1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2949 -0.8 -1.3 FIG00956396: hypothetical protein compare
Pf1N1B4_1906 -0.8 -2.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1403 -0.8 -4.2 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_578 -0.8 -1.6 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_412 -0.8 -1.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_1561 -0.8 -2.2 FIG00954300: hypothetical protein compare
Pf1N1B4_5995 -0.8 -1.8 Transporter, MFS superfamily compare
Pf1N1B4_5509 -0.8 -0.9 hypothetical protein compare
Pf1N1B4_5829 -0.8 -2.0 FIG005107: hypothetical protein compare
Pf1N1B4_3519 -0.8 -2.8 Lipase (EC 3.1.1.3) compare
Pf1N1B4_5649 -0.8 -1.6 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_5989 -0.8 -2.3 FIG067310: hypothetical protein compare
Pf1N1B4_4887 -0.8 -1.8 Pirin compare
Pf1N1B4_5105 -0.8 -1.7 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_5371 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_1475 -0.8 -3.0 FIG00962376: hypothetical protein compare
Pf1N1B4_3403 -0.8 -2.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_6037 -0.8 -1.7 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_446 -0.8 -2.5 Thymidylate kinase (EC 2.7.4.9) compare
Pf1N1B4_3906 -0.8 -2.5 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1519 -0.8 -2.4 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf1N1B4_5463 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_2106 -0.8 -2.1 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1936 -0.8 -3.5 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_2534 -0.8 -1.7 DnaJ-like protein DjlA compare
Pf1N1B4_1252 -0.8 -2.5 Adenosine deaminase (EC 3.5.4.4) compare
Pf1N1B4_1115 -0.8 -5.0 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4275 -0.8 -2.5 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_4518 -0.8 -2.2 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_2412 -0.8 -2.0 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_1399 -0.8 -2.7 FIG003573: hypothetical protein compare
Pf1N1B4_3241 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_5146 -0.8 -2.1 Chromosome initiation inhibitor compare
Pf1N1B4_5100 -0.8 -1.6 Transcriptional regulator ahyR/asaR family compare
Pf1N1B4_676 -0.8 -1.7 FIG00953991: hypothetical protein compare
Pf1N1B4_4993 -0.8 -1.9 Arabinose efflux permease compare
Pf1N1B4_5684 -0.8 -2.0 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_2724 -0.8 -3.8 Transcriptional regulator, AsnC family compare
Pf1N1B4_5620 -0.8 -1.7 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_3538 -0.8 -1.2 Transcriptional regulator, AraC family compare
Pf1N1B4_324 -0.8 -1.5 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_1691 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_3486 -0.7 -2.5 Transcriptional regulator, AraC family compare
Pf1N1B4_5091 -0.7 -2.3 hypothetical protein compare
Pf1N1B4_2114 -0.7 -3.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_259 -0.7 -2.2 Glutathione peroxidase family protein compare
Pf1N1B4_195 -0.7 -3.2 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_787 -0.7 -2.9 Nudix hydrolase family protein PA3470 compare
Pf1N1B4_4761 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_233 -0.7 -2.2 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Pf1N1B4_4401 -0.7 -2.5 Non-heme chloroperoxidase (EC 1.11.1.10) compare
Pf1N1B4_3443 -0.7 -1.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_731 -0.7 -1.4 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_5329 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_1954 -0.7 -3.2 Transcriptional regulator compare
Pf1N1B4_1569 -0.7 -5.2 Twin-arginine translocation protein TatC compare
Pf1N1B4_4517 -0.7 -1.7 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_4123 -0.7 -1.0 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_4669 -0.7 -1.3 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_1335 -0.7 -2.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf1N1B4_4671 -0.7 -1.8 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_4880 -0.7 -2.2 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf1N1B4_327 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_193 -0.7 -2.7 Transporter, LysE family compare
Pf1N1B4_1019 -0.7 -3.1 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) compare
Pf1N1B4_5907 -0.7 -2.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Pf1N1B4_4857 -0.7 -3.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_5340 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_1469 -0.7 -5.7 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_2688 -0.7 -2.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_5425 -0.7 -1.3 DNA-binding protein HU-beta compare
Pf1N1B4_21 -0.7 -1.7 Probable hydrolase compare
Pf1N1B4_4979 -0.7 -1.9 Transcriptional regulator, AsnC family compare
Pf1N1B4_1462 -0.7 -5.3 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_6035 -0.7 -2.0 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_1293 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_126 -0.7 -1.1 Pirin compare
Pf1N1B4_5451 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_4833 -0.7 -1.8 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4759 -0.7 -1.1 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_4815 -0.7 -2.8 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf1N1B4_5383 -0.7 -3.8 hypothetical protein compare
Pf1N1B4_828 -0.7 -3.0 Multicopper oxidase compare
Pf1N1B4_2879 -0.7 -3.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_5133 -0.7 -1.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_3800 -0.7 -1.8 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_1504 -0.7 -0.8 Acyl carrier protein compare
Pf1N1B4_2736 -0.7 -1.7 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_2774 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_503 -0.7 -3.1 Type IV prepilin peptidase TadV/CpaA compare
Pf1N1B4_5799 -0.7 -1.8 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf1N1B4_3869 -0.7 -4.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_1181 -0.6 -2.2 UPF0125 protein yfjF compare
Pf1N1B4_1235 -0.6 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_1830 -0.6 -3.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5831 -0.6 -2.7 SAM-dependent methyltransferases compare
Pf1N1B4_5255 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_3537 -0.6 -2.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_532 -0.6 -1.9 Transcriptional regulators, LysR family compare
Pf1N1B4_3870 -0.6 -5.3 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_6041 -0.6 -1.1 Carbon storage regulator compare
Pf1N1B4_1565 -0.6 -2.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_4257 -0.6 -1.2 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_3141 -0.6 -1.2 FIG00959768: hypothetical protein compare
Pf1N1B4_322 -0.6 -1.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_2711 -0.6 -1.5 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_3290 -0.6 -1.1 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_2069 -0.6 -2.3 Outer membrane protein ImpK/VasF, OmpA/MotB domain compare
Pf1N1B4_65 -0.6 -3.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_4678 -0.6 -2.3 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_1234 -0.6 -2.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_583 -0.6 -1.1 FIG00957748: hypothetical protein compare
Pf1N1B4_5736 -0.6 -2.0 Nitrate/nitrite transporter compare
Pf1N1B4_92 -0.6 -2.0 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_5269 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_2006 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_4448 -0.6 -1.2 COGs COG2343 compare
Pf1N1B4_708 -0.6 -2.6 Chromosome initiation inhibitor compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments