Experiment set2IT045 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_2381 +3.6 21.2 Protein yceI precursor compare
Pf1N1B4_2380 +3.6 21.2 Cytochrome B561 compare
Pf1N1B4_5925 +3.2 19.6 hypothetical protein compare
Pf1N1B4_5926 +3.2 17.9 hypothetical protein compare
Pf1N1B4_5924 +1.9 7.6 hypothetical protein compare
Pf1N1B4_3078 +1.6 2.9 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_1430 +1.6 3.0 Predicted signal transduction protein compare
Pf1N1B4_4830 +1.5 2.5 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_5927 +1.2 10.6 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_1128 +1.2 2.8 hypothetical protein compare
Pf1N1B4_3549 +1.2 2.2 YciL protein compare
Pf1N1B4_3764 +1.1 2.6 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_197 +1.1 1.4 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_4024 +1.1 2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5860 +1.1 2.2 Two-component response regulator compare
Pf1N1B4_1488 +1.1 3.0 hypothetical protein compare
Pf1N1B4_909 +1.1 2.1 Ketosteroid isomerase-related protein compare
Pf1N1B4_4422 +1.1 1.6 ABC transporter amino acid-binding protein compare
Pf1N1B4_3499 +1.0 1.7 hypothetical protein compare
Pf1N1B4_4043 +1.0 2.6 Type II and III secretion system family protein compare
Pf1N1B4_749 +1.0 2.1 hypothetical protein compare
Pf1N1B4_4814 +1.0 2.3 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_3980 +1.0 2.6 Transcriptional regulator, HxlR family compare
Pf1N1B4_3446 +1.0 1.8 Putative GTPases (G3E family) compare
Pf1N1B4_4799 +1.0 1.6 Multidrug resistance protein B compare
Pf1N1B4_611 +1.0 2.0 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_441 +0.9 1.6 hypothetical protein compare
Pf1N1B4_4601 +0.9 2.2 Streptothricin acetyltransferase, Streptomyces lavendulae type compare
Pf1N1B4_3595 +0.9 1.3 Flagellin protein FlaG compare
Pf1N1B4_3368 +0.9 1.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_733 +0.9 1.5 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_2635 +0.9 2.2 hypothetical protein compare
Pf1N1B4_2739 +0.9 1.4 acetyltransferase, GNAT family compare
Pf1N1B4_5242 +0.9 1.8 hypothetical protein compare
Pf1N1B4_5311 +0.9 1.6 hypothetical protein compare
Pf1N1B4_2713 +0.9 2.3 FIG00955339: hypothetical protein compare
Pf1N1B4_1893 +0.9 3.6 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf1N1B4_3795 +0.9 1.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4455 +0.9 1.2 FIG00953528: hypothetical protein compare
Pf1N1B4_5838 +0.9 1.7 FIG00956589: hypothetical protein compare
Pf1N1B4_3111 +0.9 1.9 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_4246 +0.9 2.7 L-lactate permease compare
Pf1N1B4_2733 +0.9 1.8 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_3802 +0.9 1.4 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_4826 +0.8 1.5 glutamine synthetase family protein compare
Pf1N1B4_4523 +0.8 1.8 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4478 +0.8 1.0 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_4822 +0.8 1.8 Paraquat-inducible protein A compare
Pf1N1B4_3966 +0.8 2.0 serine/threonine protein kinase compare
Pf1N1B4_175 +0.8 1.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1584 +0.8 1.6 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_240 +0.8 1.0 Transcriptional regulators compare
Pf1N1B4_5699 +0.8 1.5 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_2360 +0.8 2.0 hypothetical protein compare
Pf1N1B4_124 +0.8 1.7 Mechanosensitive ion channel compare
Pf1N1B4_1339 +0.8 2.8 ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component compare
Pf1N1B4_3129 +0.8 1.2 Prophage baseplate assembly protein V compare
Pf1N1B4_1279 +0.8 1.9 Flp pilus assembly protein TadB compare
Pf1N1B4_399 +0.8 1.7 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1838 +0.8 2.7 FIG00955509: hypothetical protein compare
Pf1N1B4_1530 +0.8 3.0 LysR family transcriptional regulator YnfL compare
Pf1N1B4_5866 +0.8 2.5 ThiJ/PfpI family protein compare
Pf1N1B4_3253 +0.8 2.5 Acyl carrier protein phosphodiesterase (EC 3.1.4.14) compare
Pf1N1B4_4522 +0.8 2.4 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf1N1B4_4343 +0.8 1.8 hypothetical protein compare
Pf1N1B4_339 +0.8 1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1697 +0.8 3.3 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf1N1B4_4337 +0.8 1.6 Transcriptional regulator compare
Pf1N1B4_5342 +0.8 1.5 hypothetical protein compare
Pf1N1B4_1901 +0.7 2.1 Putative NADH-flavin reductase compare
Pf1N1B4_2173 +0.7 1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_567 +0.7 1.8 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_5884 +0.7 1.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf1N1B4_5059 +0.7 1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_5090 +0.7 2.1 glycosyl transferase, family 2 compare
Pf1N1B4_3927 +0.7 1.1 hypothetical protein compare
Pf1N1B4_4855 +0.7 1.7 Response regulator compare
Pf1N1B4_5353 +0.7 2.6 hypothetical protein compare
Pf1N1B4_4960 +0.7 1.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_5598 +0.7 2.3 hypothetical protein compare
Pf1N1B4_4731 +0.7 1.9 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_4296 +0.7 2.1 Histidine transporter, periplasmic histidine-binding protein compare
Pf1N1B4_115 +0.7 1.1 Membrane protein mosC compare
Pf1N1B4_4470 +0.7 1.5 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_4729 +0.7 1.4 Hemolysin-type calcium-binding region compare
Pf1N1B4_3889 +0.7 1.0 hypothetical protein compare
Pf1N1B4_381 +0.7 1.8 hypothetical protein compare
Pf1N1B4_4670 +0.7 2.5 Sensory box/GGDEF family protein compare
Pf1N1B4_4459 +0.7 1.5 Thermostable hemolysin delta-VPH compare
Pf1N1B4_724 +0.7 2.1 DNA-binding response regulator ColR compare
Pf1N1B4_5533 +0.7 2.2 cobS protein, putative compare
Pf1N1B4_4433 +0.7 1.8 FIG035246: DoxX family protein compare
Pf1N1B4_157 +0.7 1.9 ThiJ/PfpI family protein compare
Pf1N1B4_4004 +0.7 1.4 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_4317 +0.7 0.8 DNA/RNA non-specific endonuclease compare
Pf1N1B4_4111 +0.7 1.5 Panthothenate synthetase compare
Pf1N1B4_5435 +0.7 2.1 hypothetical protein compare
Pf1N1B4_4219 +0.7 1.4 FIG01074225: hypothetical protein compare
Pf1N1B4_5265 +0.7 2.2 hypothetical protein compare
Pf1N1B4_5077 +0.7 1.5 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_1228 +0.7 2.4 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Pf1N1B4_5827 +0.7 1.8 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_51 +0.7 1.8 hypothetical protein compare
Pf1N1B4_5711 +0.7 1.7 Salicylate hydroxylase (EC 1.14.13.1) compare
Pf1N1B4_138 +0.6 0.7 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_4772 +0.6 2.8 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_2060 +0.6 1.7 hypothetical protein compare
Pf1N1B4_4289 +0.6 2.7 Methyl-accepting chemotaxis protein compare
Pf1N1B4_5549 +0.6 2.2 hypothetical protein compare
Pf1N1B4_560 +0.6 2.2 Transcriptional regulators, LysR family compare
Pf1N1B4_3191 +0.6 1.4 FIG00953505: hypothetical protein compare
Pf1N1B4_855 +0.6 1.7 FIG021952: putative membrane protein compare
Pf1N1B4_5331 +0.6 1.1 hypothetical protein compare
Pf1N1B4_4220 +0.6 1.9 Maebl compare
Pf1N1B4_1048 +0.6 2.5 Sulfate transporter, CysZ-type compare
Pf1N1B4_5275 +0.6 1.2 hypothetical protein compare
Pf1N1B4_1408 +0.6 2.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1705 +0.6 1.5 SAM-dependent methyltransferases compare
Pf1N1B4_5786 +0.6 1.9 putative membrane protein compare
Pf1N1B4_2695 +0.6 1.4 Rare lipoprotein A precursor compare
Pf1N1B4_1837 +0.6 1.1 Osmotically inducible protein C compare
Pf1N1B4_1266 +0.6 1.8 hypothetical protein compare
Pf1N1B4_5518 +0.6 2.7 General secretion pathway protein E compare
Pf1N1B4_3056 +0.6 1.9 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_5877 +0.6 1.3 FIG00967533: hypothetical protein compare
Pf1N1B4_1110 +0.6 2.8 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
Pf1N1B4_1150 +0.6 2.2 AmpE protein compare
Pf1N1B4_4218 +0.6 1.6 Multidrug resistance protein A compare
Pf1N1B4_3544 +0.6 2.1 Nitroreductase family protein compare
Pf1N1B4_5239 +0.6 1.4 hypothetical protein compare
Pf1N1B4_3451 +0.6 1.9 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_1789 +0.6 3.4 FIG01270322: hypothetical protein compare
Pf1N1B4_4980 +0.6 1.1 putative lipoprotein compare
Pf1N1B4_5095 +0.6 1.2 hypothetical protein compare
Pf1N1B4_4962 +0.6 1.8 C4-dicarboxylate transport protein compare
Pf1N1B4_921 +0.6 3.1 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf1N1B4_3610 +0.6 2.9 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf1N1B4_4239 +0.6 1.8 hypothetical protein compare
Pf1N1B4_5585 +0.6 1.7 LysR family transcriptional regulator YdcI compare
Pf1N1B4_2067 +0.6 1.8 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_919 +0.6 1.4 hypothetical protein compare
Pf1N1B4_3038 +0.6 2.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_5801 +0.6 1.6 hypothetical protein compare
Pf1N1B4_866 +0.6 1.3 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_4592 +0.6 1.4 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_5370 +0.6 1.3 hypothetical protein compare
Pf1N1B4_5430 +0.6 1.4 hypothetical protein compare
Pf1N1B4_230 +0.6 1.2 FIG00953472: hypothetical protein compare
Pf1N1B4_4132 +0.6 1.1 Mobile element protein compare
Pf1N1B4_5151 +0.6 1.5 FIG002283: Isochorismatase family protein compare
Pf1N1B4_929 +0.6 1.5 FIG00964214: hypothetical protein compare
Pf1N1B4_239 +0.6 1.5 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_5725 +0.6 0.9 High-affinity iron permease compare
Pf1N1B4_345 +0.6 1.1 Integration host factor beta subunit compare
Pf1N1B4_4763 +0.6 1.8 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
Pf1N1B4_4377 +0.6 1.8 Cell wall hydrolyses involved in spore germination compare
Pf1N1B4_5124 +0.6 2.0 two component transcriptional regulator, LuxR family compare
Pf1N1B4_1318 +0.6 2.0 hypothetical protein compare
Pf1N1B4_4817 +0.6 2.0 Fe2+-dicitrate sensor, membrane component compare
Pf1N1B4_5804 +0.6 1.5 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_2507 +0.6 1.6 hypothetical protein compare
Pf1N1B4_814 +0.6 1.0 Transcriptional regulator, PadR family compare
Pf1N1B4_4107 +0.5 1.2 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_3632 +0.5 1.9 Flagellar motor rotation protein MotB compare
Pf1N1B4_5886 +0.5 1.5 Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6) compare
Pf1N1B4_4900 +0.5 1.3 Alkaline proteinase inhibitor precursor compare
Pf1N1B4_1008 +0.5 0.6 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_2485 +0.5 1.3 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_4713 +0.5 2.0 Xanthine permease compare
Pf1N1B4_526 +0.5 1.5 Undecaprenyl pyrophosphate synthase compare
Pf1N1B4_1011 +0.5 2.1 ribosomal subunit interface protein, putative compare
Pf1N1B4_515 +0.5 1.5 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf1N1B4_4393 +0.5 1.1 Ferredoxin reductase compare
Pf1N1B4_5349 +0.5 1.5 hypothetical protein compare
Pf1N1B4_3020 +0.5 2.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
Pf1N1B4_808 +0.5 2.2 hypothetical protein compare
Pf1N1B4_4668 +0.5 1.4 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_2889 +0.5 2.2 FIG00954491: hypothetical protein compare
Pf1N1B4_928 +0.5 2.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_2004 +0.5 1.3 putative membrane protein compare
Pf1N1B4_564 +0.5 1.3 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_3783 +0.5 0.9 FIG00958237: hypothetical protein compare
Pf1N1B4_4604 +0.5 1.4 FMN reductase, NADPH-dependent compare
Pf1N1B4_3578 +0.5 1.4 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf1N1B4_1704 +0.5 1.8 hypothetical protein compare
Pf1N1B4_3620 +0.5 1.2 Flagellar biosynthesis protein FliR compare
Pf1N1B4_4313 +0.5 1.8 putative membrane protein compare
Pf1N1B4_5464 +0.5 1.3 Cointegrate resolution protein T compare
Pf1N1B4_5835 +0.5 1.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_579 +0.5 2.6 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1637 +0.5 0.7 FIG00954739: hypothetical protein compare
Pf1N1B4_3511 +0.5 2.5 FIG00953102: hypothetical protein compare
Pf1N1B4_338 +0.5 1.3 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_5619 +0.5 2.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_2464 +0.5 1.4 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_899 +0.5 0.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_5357 +0.5 0.8 hypothetical protein compare
Pf1N1B4_5721 +0.5 0.9 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_758 +0.5 1.6 Bacterioferritin compare
Pf1N1B4_5306 +0.5 0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments