Experiment set2IT045 for Shewanella loihica PV-4

Compare to:

LB with Sodium Chlorite 200 mM

Group: stress
Media: LB + Sodium Chlorite (200 mM)
Culturing: PV4_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Adam on 12/11/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 812 A1,A2

Specific Phenotypes

For 9 genes in this experiment

For stress Sodium Chlorite in Shewanella loihica PV-4

For stress Sodium Chlorite across organisms

SEED Subsystems

Subsystem #Specific
Molybdenum cofactor biosynthesis 6
Transport of Molybdenum 3
ABC transporter tungstate (TC 3.A.1.6.2) 1
Auxin degradation 1
Oxidative stress 1
Photorespiration (oxidative C2 cycle) 1
ZZ gjo need homes 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
betanidin degradation 1 1 1
superoxide radicals degradation 2 2 1
molybdopterin biosynthesis 6 5 3
baicalein degradation (hydrogen peroxide detoxification) 2 1 1
methanol oxidation to formaldehyde IV 2 1 1
ethanol degradation IV 3 3 1
molybdenum cofactor biosynthesis 3 2 1
reactive oxygen species degradation 4 4 1
luteolin triglucuronide degradation 4 1 1
xanthommatin biosynthesis 4 1 1
sesamin biosynthesis 8 1 1
matairesinol biosynthesis 10 1 1
justicidin B biosynthesis 10 1 1