Experiment set2IT045 for Ralstonia sp. UNC404CL21Col

Compare to:

Pimelic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -7.7 -5.3 phosphoserine phosphatase SerB compare
ABZR87_RS14500 -6.7 -10.3 tryptophan synthase subunit beta compare
ABZR87_RS02570 -6.5 -18.0 glutamate synthase-related protein compare
ABZR87_RS02595 -6.5 -12.4 shikimate kinase compare
ABZR87_RS02565 -6.4 -4.5 glutamate synthase subunit beta compare
ABZR87_RS14535 -6.4 -4.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS05200 -6.1 -18.0 homoserine O-acetyltransferase compare
ABZR87_RS16170 -5.9 -7.1 argininosuccinate lyase compare
ABZR87_RS02160 -5.9 -7.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS02155 -5.8 -10.5 anthranilate phosphoribosyltransferase compare
ABZR87_RS07360 -5.8 -16.3 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14505 -5.8 -6.9 phosphoribosylanthranilate isomerase compare
ABZR87_RS01810 -5.8 -5.6 glutamate 5-kinase compare
ABZR87_RS13790 -5.8 -12.9 chorismate synthase compare
ABZR87_RS14540 -5.7 -9.6 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS09445 -5.7 -16.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS08630 -5.7 -13.3 dihydroorotase compare
ABZR87_RS14530 -5.6 -7.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS02640 -5.5 -18.4 diaminopimelate decarboxylase compare
ABZR87_RS02140 -5.5 -20.4 anthranilate synthase component I compare
ABZR87_RS08625 -5.4 -3.7 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS22970 -5.4 -13.9 cystathionine gamma-synthase family protein compare
ABZR87_RS09465 -5.4 -9.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02590 -5.3 -13.4 3-dehydroquinate synthase compare
ABZR87_RS14490 -5.3 -9.6 tryptophan synthase subunit alpha compare
ABZR87_RS14950 -5.3 -3.6 acetolactate synthase small subunit compare
ABZR87_RS06770 -5.2 -10.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS00835 -5.1 -3.5 argininosuccinate synthase compare
ABZR87_RS00190 -5.0 -12.6 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00210 -4.9 -8.8 nitrite/sulfite reductase compare
ABZR87_RS12785 -4.9 -6.7 endopeptidase La compare
ABZR87_RS09935 -4.9 -4.7 amino acid aminotransferase compare
ABZR87_RS07380 -4.8 -16.1 FAD/FMN-binding oxidoreductase compare
ABZR87_RS09100 -4.8 -14.1 acyl-CoA dehydrogenase compare
ABZR87_RS05590 -4.8 -4.7 orotate phosphoribosyltransferase compare
ABZR87_RS09450 -4.8 -9.0 prephenate dehydratase compare
ABZR87_RS04865 -4.4 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00185 -4.4 -4.2 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00195 -4.3 -4.3 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS05170 -4.2 -4.1 acetylglutamate kinase compare
ABZR87_RS02145 -4.1 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS01645 -4.1 -5.4 type II 3-dehydroquinate dehydratase compare
ABZR87_RS00435 -4.0 -13.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS01110 -4.0 -10.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS09515 -3.9 -2.7 cysteine synthase CysM compare
ABZR87_RS13415 -3.9 -9.8 IclR family transcriptional regulator compare
ABZR87_RS11440 -3.8 -7.5 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS08695 -3.8 -17.6 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS12790 -3.8 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06715 -3.7 -6.5 PTS sugar transporter subunit IIA compare
ABZR87_RS07665 -3.7 -14.1 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00200 -3.6 -4.0 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00205 -3.5 -3.7 DUF934 domain-containing protein compare
ABZR87_RS16660 -3.4 -6.4 helix-turn-helix domain-containing protein compare
ABZR87_RS02655 -3.4 -12.6 anti-sigma factor compare
ABZR87_RS00285 -3.3 -2.3 acetylornithine transaminase compare
ABZR87_RS11625 -3.3 -10.7 malate synthase A compare
ABZR87_RS00220 -3.3 -10.2 CysB family HTH-type transcriptional regulator compare
ABZR87_RS14115 -3.2 -8.1 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13475 -3.2 -10.4 PAS domain S-box protein compare
ABZR87_RS10085 -3.1 -3.6 Rne/Rng family ribonuclease compare
ABZR87_RS14955 -3.1 -4.7 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS12795 -3.1 -7.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS06645 -2.8 -4.2 TlpA disulfide reductase family protein compare
ABZR87_RS08700 -2.7 -12.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS08795 -2.7 -6.4 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS00970 -2.7 -3.5 molecular chaperone DnaJ compare
ABZR87_RS06315 -2.6 -14.6 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS04785 -2.6 -11.2 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS16180 -2.5 -3.0 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS01615 -2.5 -3.7 RNB domain-containing ribonuclease compare
ABZR87_RS20870 -2.5 -9.5 LysR family transcriptional regulator compare
ABZR87_RS12800 -2.5 -7.9 trigger factor compare
ABZR87_RS05025 -2.4 -3.3 rod shape-determining protein MreC compare
ABZR87_RS07050 -2.3 -1.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS02075 -2.3 -2.1 23S ribosomal RNA compare
ABZR87_RS05100 -2.3 -7.4 RNA polymerase-binding protein DksA compare
ABZR87_RS05010 -2.2 -4.7 rod shape-determining protein RodA compare
ABZR87_RS11125 -2.2 -7.5 cell division protein ZapE compare
ABZR87_RS17495 -2.2 -13.5 acyl-CoA synthetase compare
ABZR87_RS09460 -2.1 -5.4 prephenate dehydrogenase compare
ABZR87_RS07705 -2.1 -5.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS10170 -2.0 -8.5 RseA family anti-sigma factor compare
ABZR87_RS10785 -1.9 -6.0 exodeoxyribonuclease V subunit beta compare
ABZR87_RS08640 -1.9 -7.5 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS21815 -1.8 -1.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS10780 -1.8 -4.5 PD-(D/E)XK nuclease family protein compare
ABZR87_RS16185 -1.7 -1.7 dCTP deaminase compare
ABZR87_RS02480 -1.7 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS05015 -1.7 -5.8 penicillin-binding protein 2 compare
ABZR87_RS16250 -1.7 -4.7 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS16960 -1.7 -4.6 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS11010 -1.7 -3.3 oxidative damage protection protein compare
ABZR87_RS12585 -1.6 -5.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS10240 -1.6 -2.5 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS01605 -1.5 -7.2 shikimate dehydrogenase compare
ABZR87_RS15440 -1.5 -3.2 ribonuclease G compare
ABZR87_RS00215 -1.5 -3.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS13285 -1.4 -8.0 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10620 -1.4 -1.9 serine O-acetyltransferase compare
ABZR87_RS00795 -1.4 -3.2 site-specific tyrosine recombinase XerD compare
ABZR87_RS16845 -1.4 -1.4 hypothetical protein compare
ABZR87_RS04640 -1.3 -3.2 hypothetical protein compare
ABZR87_RS04940 -1.3 -7.3 PAS domain-containing sensor histidine kinase compare
ABZR87_RS09200 -1.3 -10.1 long-chain fatty acid--CoA ligase compare
ABZR87_RS13175 -1.3 -1.6 tRNA-Leu compare
ABZR87_RS10550 -1.3 -2.2 outer membrane protein assembly factor BamC compare
ABZR87_RS11815 -1.3 -5.6 [protein-PII] uridylyltransferase compare
ABZR87_RS10195 -1.3 -4.7 signal peptidase I compare
ABZR87_RS02575 -1.2 -4.3 transposase compare
ABZR87_RS07035 -1.2 -6.6 RNase adapter RapZ compare
ABZR87_RS16125 -1.2 -6.5 heme biosynthesis protein HemY compare
ABZR87_RS00325 -1.2 -2.1 peptidylprolyl isomerase compare
ABZR87_RS07020 -1.2 -9.2 dynamin-like GTPase family protein compare
ABZR87_RS18170 -1.2 -1.7 hypothetical protein compare
ABZR87_RS10980 -1.2 -1.4 tRNA-Leu compare
ABZR87_RS07730 -1.2 -2.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS14510 -1.1 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS04215 -1.1 -2.3 ABC transporter ATP-binding protein compare
ABZR87_RS10175 -1.1 -5.3 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS06845 -1.1 -6.4 heme o synthase compare
ABZR87_RS16740 -1.0 -5.6 2-methylcitrate synthase compare
ABZR87_RS04200 -1.0 -5.0 branched-chain amino acid ABC transporter permease compare
ABZR87_RS18415 -1.0 -2.4 hypothetical protein compare
ABZR87_RS01035 -1.0 -4.0 histidine utilization repressor compare
ABZR87_RS08205 -1.0 -1.4 hypothetical protein compare
ABZR87_RS20440 -1.0 -1.3 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS04195 -1.0 -6.6 branched-chain amino acid ABC transporter permease compare
ABZR87_RS18105 -1.0 -1.2 hypothetical protein compare
ABZR87_RS08970 -0.9 -4.4 protein TolQ compare
ABZR87_RS00580 -0.9 -2.2 hypothetical protein compare
ABZR87_RS07620 -0.9 -2.1 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS21795 -0.9 -3.1 NUDIX domain-containing protein compare
ABZR87_RS10400 -0.9 -1.8 hypothetical protein compare
ABZR87_RS08985 -0.9 -5.9 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS17560 -0.9 -6.0 ABC transporter substrate-binding protein compare
ABZR87_RS22920 -0.9 -3.3 phosphogluconate dehydratase compare
ABZR87_RS05145 -0.9 -1.5 copper chaperone PCu(A)C compare
ABZR87_RS04105 -0.9 -3.6 ATP synthase subunit I compare
ABZR87_RS11770 -0.9 -4.2 succinyldiaminopimelate transaminase compare
ABZR87_RS04210 -0.8 -3.9 ABC transporter ATP-binding protein compare
ABZR87_RS06705 -0.8 -6.3 glutamate--cysteine ligase compare
ABZR87_RS07700 -0.8 -1.8 peptidylprolyl isomerase compare
ABZR87_RS17695 -0.8 -1.7 helix-turn-helix transcriptional regulator compare
ABZR87_RS13645 -0.8 -1.1 hypothetical protein compare
ABZR87_RS04500 -0.8 -1.1 hypothetical protein compare
ABZR87_RS11940 -0.8 -2.7 SsrA-binding protein SmpB compare
ABZR87_RS12150 -0.8 -2.4 6-carboxytetrahydropterin synthase QueD compare
ABZR87_RS13010 -0.8 -1.5 GPW/gp25 family protein compare
ABZR87_RS13705 -0.8 -0.9 integration host factor subunit alpha compare
ABZR87_RS08660 -0.8 -3.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS22690 -0.8 -2.2 XRE family transcriptional regulator compare
ABZR87_RS05115 -0.8 -3.1 ATP-dependent protease subunit HslV compare
ABZR87_RS14495 -0.8 -2.6 site-specific DNA-methyltransferase compare
ABZR87_RS03015 -0.8 -5.3 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR87_RS01760 -0.8 -1.0 PP0621 family protein compare
ABZR87_RS07675 -0.8 -5.5 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS11375 -0.8 -5.0 inorganic phosphate transporter compare
ABZR87_RS07760 -0.8 -2.1 HlyC/CorC family transporter compare
ABZR87_RS07625 -0.7 -1.5 Holliday junction branch migration protein RuvA compare
ABZR87_RS13400 -0.7 -1.0 hypothetical protein compare
ABZR87_RS15305 -0.7 -1.6 pyroglutamyl-peptidase I compare
ABZR87_RS13300 -0.7 -4.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01640 -0.7 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS05205 -0.7 -3.1 methionine biosynthesis protein MetW compare
ABZR87_RS00625 -0.7 -1.4 hypothetical protein compare
ABZR87_RS08610 -0.7 -2.4 YqgE/AlgH family protein compare
ABZR87_RS06810 -0.7 -3.6 cytochrome c oxidase assembly protein compare
ABZR87_RS15955 -0.7 -1.3 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS11000 -0.7 -4.3 transaldolase compare
ABZR87_RS11015 -0.7 -3.4 amino-acid N-acetyltransferase compare
ABZR87_RS12270 -0.7 -2.9 CreA family protein compare
ABZR87_RS07710 -0.7 -3.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS06710 -0.7 -5.8 glutathione synthase compare
ABZR87_RS15405 -0.7 -2.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS01245 -0.7 -2.4 Dps family protein compare
ABZR87_RS09085 -0.7 -4.7 DUF883 family protein compare
ABZR87_RS04860 -0.7 -2.1 phage holin family protein compare
ABZR87_RS16165 -0.7 -0.8 anti-sigma factor compare
ABZR87_RS04190 -0.7 -1.2 hypothetical protein compare
ABZR87_RS10070 -0.7 -1.7 gephyrin-like molybdotransferase Glp compare
ABZR87_RS14745 -0.7 -1.2 urease subunit gamma compare
ABZR87_RS01270 -0.7 -4.1 ATP-dependent DNA helicase RecG compare
ABZR87_RS23035 -0.6 -1.2 PIG-L family deacetylase compare
ABZR87_RS09955 -0.6 -3.5 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS02445 -0.6 -3.6 Sec-independent protein translocase protein TatB compare
ABZR87_RS11585 -0.6 -2.8 gamma-glutamylcyclotransferase compare
ABZR87_RS11370 -0.6 -1.9 DUF47 domain-containing protein compare
ABZR87_RS03625 -0.6 -0.8 hypothetical protein compare
ABZR87_RS22000 -0.6 -1.5 hypothetical protein compare
ABZR87_RS08620 -0.6 -1.3 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
ABZR87_RS15250 -0.6 -3.9 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS09875 -0.6 -2.2 GNAT family protein compare
ABZR87_RS12610 -0.6 -3.6 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS17525 -0.6 -4.3 helix-turn-helix domain-containing protein compare
ABZR87_RS19340 -0.6 -1.7 LysR family transcriptional regulator compare
ABZR87_RS15810 -0.6 -2.3 hypothetical protein compare
ABZR87_RS01360 -0.6 -5.3 response regulator compare
ABZR87_RS15940 -0.6 -3.6 pyrroloquinoline quinone precursor peptide PqqA compare
ABZR87_RS16730 -0.6 -3.0 2-methylaconitate cis-trans isomerase PrpF compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source Pimelic acid across organisms