Experiment set2IT044 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Phosphomycin disodium salt 0.004 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.8 -4.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3264 -5.8 -4.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2281 -5.5 -3.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3062 -5.4 -5.2 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3941 -5.4 -3.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5172 -5.3 -6.3 FOG: TPR repeat compare
Pf6N2E2_4077 -5.2 -3.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3658 -5.2 -6.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5171 -5.1 -20.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3899 -4.7 -10.5 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_2507 -4.6 -7.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2509 -4.5 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3908 -4.5 -5.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4809 -4.5 -17.4 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases conserved
Pf6N2E2_2799 -4.4 -11.4 Fosfomycin resistance protein FosA compare
Pf6N2E2_623 -4.2 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_3344 -4.1 -5.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_4838 -4.1 -12.2 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_5430 -4.1 -11.9 Transglycosylase, Slt family compare
Pf6N2E2_4810 -4.1 -9.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_3661 -3.9 -6.5 hypothetical protein compare
Pf6N2E2_3611 -3.9 -2.3 HflC protein compare
Pf6N2E2_3663 -3.8 -8.0 Glycosyl transferase compare
Pf6N2E2_3351 -3.7 -5.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4352 -3.7 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3655 -3.7 -14.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3659 -3.7 -7.9 Protein fixF compare
Pf6N2E2_2971 -3.6 -18.2 AmpG permease compare
Pf6N2E2_620 -3.6 -8.5 BatD compare
Pf6N2E2_4084 -3.6 -9.7 Transcriptional regulator compare
Pf6N2E2_5014 -3.6 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2756 -3.5 -9.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_624 -3.5 -8.2 hypothetical protein PA3071 compare
Pf6N2E2_5255 -3.5 -11.7 Outer membrane stress sensor protease DegS compare
Pf6N2E2_70 -3.4 -5.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_625 -3.4 -6.2 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3346 -3.2 -6.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_4416 -3.2 -4.4 Tyrosine recombinase XerC compare
Pf6N2E2_4148 -3.1 -7.6 Glutamate-aspartate carrier protein compare
Pf6N2E2_621 -3.1 -6.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4369 -3.1 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4187 -3.1 -5.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2526 -2.9 -6.3 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_622 -2.8 -4.8 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2217 -2.8 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5111 -2.7 -4.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_3632 -2.6 -6.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) conserved
Pf6N2E2_1545 -2.6 -7.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4204 -2.6 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3261 -2.6 -5.6 hypothetical protein compare
Pf6N2E2_3461 -2.5 -2.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4453 -2.5 -16.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_3876 -2.4 -4.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4087 -2.4 -11.5 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf6N2E2_4353 -2.3 -5.9 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2753 -2.3 -4.2 HtrA protease/chaperone protein compare
Pf6N2E2_6140 -2.2 -1.3 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2508 -2.2 -2.6 hypothetical protein compare
Pf6N2E2_2513 -2.1 -3.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2510 -2.1 -3.6 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2218 -2.1 -5.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5707 -2.1 -10.1 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate compare
Pf6N2E2_4974 -2.0 -6.1 DedA protein compare
Pf6N2E2_3942 -2.0 -9.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5555 -1.9 -1.8 Cold shock protein CspA compare
Pf6N2E2_3504 -1.9 -9.7 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2646 -1.9 -1.3 FIG00953416: hypothetical protein compare
Pf6N2E2_5388 -1.8 -10.8 GDP-mannose 6-dehydrogenase (EC 1.1.1.132) compare
Pf6N2E2_5331 -1.8 -5.4 ATPase, AFG1 family compare
Pf6N2E2_4612 -1.8 -1.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4086 -1.8 -11.2 sodium/alanine transporter compare
Pf6N2E2_3883 -1.7 -4.8 C4-dicarboxylate transport transcriptional regulatory protein compare
Pf6N2E2_5573 -1.7 -3.5 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_4836 -1.7 -5.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_3882 -1.7 -6.2 Signal transduction histidine kinase regulating C4-dicarboxylate transport system compare
Pf6N2E2_3656 -1.7 -3.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_2794 -1.7 -1.3 putative membrane protein compare
Pf6N2E2_5663 -1.7 -3.6 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_3373 -1.6 -3.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2605 -1.6 -3.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5660 -1.6 -5.1 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
Pf6N2E2_5235 -1.6 -7.6 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Pf6N2E2_2074 -1.6 -1.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5001 -1.6 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2213 -1.6 -4.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5671 -1.6 -3.1 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5342 -1.6 -3.0 21 kDa hemolysin precursor compare
Pf6N2E2_3060 -1.6 -2.2 Outer membrane protein H precursor compare
Pf6N2E2_4162 -1.6 -2.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_178 -1.5 -1.1 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3255 -1.5 -2.4 YrbA protein compare
Pf6N2E2_2373 -1.5 -2.6 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_2693 -1.5 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5860 -1.5 -7.5 Branched-chain amino acid transport system carrier protein compare
Pf6N2E2_773 -1.5 -5.5 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_2864 -1.5 -1.9 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_1424 -1.5 -1.8 transcriptional regulator, TetR family compare
Pf6N2E2_5387 -1.5 -8.4 Alginate biosynthesis protein Alg8 compare
Pf6N2E2_5386 -1.5 -4.8 Alginate biosynthesis protein Alg44 compare
Pf6N2E2_5584 -1.4 -2.5 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_3613 -1.4 -5.1 GTP-binding protein HflX compare
Pf6N2E2_2549 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_5242 -1.4 -1.5 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3617 -1.4 -3.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3505 -1.4 -1.3 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5086 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_4273 -1.4 -5.9 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5384 -1.4 -5.7 outer membrane protein AlgE compare
Pf6N2E2_3134 -1.4 -1.0 hypothetical protein compare
Pf6N2E2_2473 -1.3 -1.2 Major outer membrane lipoprotein I compare
Pf6N2E2_5381 -1.3 -5.1 Alginate lyase precursor (EC 4.2.2.3) compare
Pf6N2E2_1636 -1.3 -7.2 Ferrichrome-iron receptor compare
Pf6N2E2_5661 -1.3 -4.6 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_3664 -1.3 -6.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5527 -1.3 -2.8 Cold shock protein CspC compare
Pf6N2E2_5130 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_1652 -1.3 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_1834 -1.3 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_3300 -1.3 -2.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5241 -1.3 -1.6 Aminopeptidase N compare
Pf6N2E2_5245 -1.3 -5.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5740 -1.2 -4.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_2022 -1.2 -6.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2514 -1.2 -2.9 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2286 -1.2 -1.6 FIG00953287: hypothetical protein compare
Pf6N2E2_122 -1.2 -1.8 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5383 -1.2 -8.1 Poly(beta-D-mannuronate) C5 epimerase precursor (EC 5.1.3.-) compare
Pf6N2E2_1294 -1.2 -1.8 Carbon starvation protein A compare
Pf6N2E2_3074 -1.2 -1.3 FIG00960973: hypothetical protein compare
Pf6N2E2_5385 -1.2 -6.9 Alginate biosynthesis protein AlgK precursor compare
Pf6N2E2_3271 -1.2 -1.8 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_434 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_4498 -1.1 -8.5 Outer membrane porin, OprD family compare
Pf6N2E2_5662 -1.1 -5.7 L-Arginine ABC transporter, permease protein AotM (from data) compare
Pf6N2E2_2827 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_3727 -1.1 -2.0 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_5664 -1.1 -3.2 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_5646 -1.1 -1.3 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3021 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_2340 -1.1 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_5766 -1.1 -1.3 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1288 -1.1 -2.0 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_5756 -1.1 -3.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2674 -1.1 -1.1 FIG00953856: hypothetical protein compare
Pf6N2E2_4169 -1.1 -5.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4706 -1.1 -1.8 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_75 -1.0 -2.8 Colicin V production protein compare
Pf6N2E2_3460 -1.0 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3856 -1.0 -5.2 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_2488 -1.0 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3201 -1.0 -4.2 Transcriptional regulator, MerR family compare
Pf6N2E2_4541 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_2205 -1.0 -3.2 FIG033889: YebC paralog in Betaproteobacteria compare
Pf6N2E2_3616 -1.0 -4.1 DNA mismatch repair protein MutL compare
Pf6N2E2_4448 -1.0 -2.2 probable P23 protein compare
Pf6N2E2_698 -1.0 -1.7 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_5780 -1.0 -5.2 Periplasmic protease compare
Pf6N2E2_3560 -1.0 -4.0 membrane protein, putative compare
Pf6N2E2_5525 -1.0 -5.6 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Pf6N2E2_5377 -1.0 -5.5 Mannose-6-phosphate isomerase (EC 5.3.1.8) / Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
Pf6N2E2_4167 -1.0 -5.2 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf6N2E2_3039 -1.0 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3844 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_1667 -0.9 -2.0 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2714 -0.9 -1.2 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_5720 -0.9 -6.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_3638 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_2013 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_81 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_537 -0.9 -2.9 Na(+) H(+) antiporter subunit C compare
Pf6N2E2_4609 -0.9 -3.5 UPF0301 protein YqgE compare
Pf6N2E2_5389 -0.9 -5.4 UPF0246 protein YaaA compare
Pf6N2E2_766 -0.9 -2.1 Fap protein with C39 domain compare
Pf6N2E2_715 -0.9 -2.8 putative membrane protein compare
Pf6N2E2_5378 -0.9 -5.8 alginate o-acetyltransferase AlgF compare
Pf6N2E2_5806 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_84 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_4374 -0.9 -4.5 Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2) compare
Pf6N2E2_6065 -0.9 -1.9 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1281 -0.9 -1.5 ATPase involved in DNA repair compare
Pf6N2E2_4039 -0.9 -3.2 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf6N2E2_2919 -0.9 -1.6 FIG00955830: hypothetical protein compare
Pf6N2E2_2325 -0.9 -2.5 Recombination protein RecR compare
Pf6N2E2_5133 -0.9 -2.2 FIG00953980: hypothetical protein compare
Pf6N2E2_2717 -0.9 -2.9 putative cytoplasmic protein compare
Pf6N2E2_5379 -0.9 -4.1 alginate biosynthesis protein AlgJ compare
Pf6N2E2_1141 -0.9 -2.2 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_2080 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_241 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_5382 -0.8 -5.8 Alginate biosynthesis protein AlgX compare
Pf6N2E2_5586 -0.8 -4.1 Alkyl hydroperoxide reductase subunit C-like protein compare
Pf6N2E2_251 -0.8 -2.1 transcriptional regulator compare
Pf6N2E2_6047 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_1246 -0.8 -1.6 FIG00961372: hypothetical protein compare
Pf6N2E2_600 -0.8 -1.9 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_4982 -0.8 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_5006 -0.8 -3.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4145 -0.8 -1.9 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf6N2E2_1932 -0.8 -2.9 Transcriptional regulator, IclR family compare
Pf6N2E2_4092 -0.8 -1.6 FIG00954395: hypothetical protein compare


Specific Phenotypes

For 32 genes in this experiment

For stress Phosphomycin disodium salt in Pseudomonas fluorescens FW300-N2E2

For stress Phosphomycin disodium salt across organisms