Experiment set2IT044 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Serine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_00490 -3.0 -2.9 PasA protein compare
AO353_15500 -2.6 -6.8 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_12710 -2.6 -2.0 thioredoxin compare
AO353_20540 -2.5 -4.5 aromatic amino acid aminotransferase compare
AO353_20695 -2.5 -3.4 O-succinylhomoserine sulfhydrylase compare
AO353_12520 -2.5 -5.2 glutamate synthase compare
AO353_20665 -2.4 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_20635 -2.3 -5.2 3-isopropylmalate dehydrogenase compare
AO353_07210 -2.3 -3.2 indole-3-glycerol-phosphate synthase compare
AO353_10035 -2.3 -5.4 LysR family transcriptional regulator compare
AO353_12090 -2.3 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_12085 -2.3 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_15505 -2.3 -6.9 LysR family transcriptional regulator compare
AO353_12515 -2.3 -11.1 glutamate synthase compare
AO353_14505 -2.2 -5.6 ketol-acid reductoisomerase compare
AO353_21595 -2.2 -4.2 serine/threonine protein kinase compare
AO353_09285 -2.2 -6.3 reactive intermediate/imine deaminase compare
AO353_07230 -2.2 -8.4 anthranilate synthase compare
AO353_20620 -2.1 -3.7 isopropylmalate isomerase compare
AO353_08345 -2.1 -4.2 dihydroxy-acid dehydratase compare
AO353_08780 -2.1 -4.8 5-formyltetrahydrofolate cyclo-ligase compare
AO353_05110 -2.1 -5.4 histidinol dehydrogenase compare
AO353_09045 -2.0 -1.3 hypothetical protein compare
AO353_10725 -2.0 -1.5 dodecin flavoprotein compare
AO353_08180 -1.9 -6.4 homoserine O-acetyltransferase compare
AO353_07220 -1.9 -4.8 anthranilate synthase compare
AO353_15925 -1.9 -7.5 2-isopropylmalate synthase compare
AO353_12070 -1.9 -4.6 imidazoleglycerol-phosphate dehydratase compare
AO353_08185 -1.8 -5.5 methionine biosynthesis protein MetW compare
AO353_00620 -1.8 -2.1 cytochrome C oxidase Cbb3 compare
AO353_10025 -1.8 -7.8 pyruvate carboxylase subunit B compare
AO353_14385 -1.7 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO353_04155 -1.7 -5.7 ornithine carbamoyltransferase compare
AO353_02070 -1.7 -4.0 prephenate dehydratase compare
AO353_05115 -1.7 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_10030 -1.7 -5.2 pyruvate carboxylase subunit A compare
AO353_07215 -1.7 -3.7 anthranilate phosphoribosyltransferase compare
AO353_03590 -1.7 -1.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_20625 -1.6 -2.5 3-isopropylmalate dehydratase compare
AO353_12365 -1.6 -2.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_00430 -1.6 -1.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_18135 -1.6 -1.9 hypothetical protein compare
AO353_10670 -1.6 -3.9 shikimate dehydrogenase compare
AO353_14400 -1.6 -1.5 Fis family transcriptional regulator compare
AO353_19295 -1.6 -2.3 hypothetical protein compare
AO353_28485 -1.5 -2.7 LysR family transcriptional regulator compare
AO353_08685 -1.5 -4.3 N-acetylglutamate synthase compare
AO353_11750 -1.5 -1.8 ATPase compare
AO353_04105 -1.5 -3.3 argininosuccinate synthase compare
AO353_26550 -1.5 -1.7 hypothetical protein compare
AO353_03585 -1.5 -2.0 ATP-dependent DNA helicase RuvA compare
AO353_05535 -1.5 -2.2 tRNA-Thr compare
AO353_27215 -1.4 -2.1 hypothetical protein compare
AO353_02810 -1.4 -3.9 histidine kinase compare
AO353_07155 -1.4 -3.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10710 -1.4 -2.2 tryptophan synthase subunit beta compare
AO353_04970 -1.4 -2.6 cell division protein DedD compare
AO353_14495 -1.4 -4.2 acetolactate synthase 3 catalytic subunit compare
AO353_12345 -1.4 -1.3 twin-arginine protein translocation system subunit TatC compare
AO353_13165 -1.3 -2.8 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02250 -1.3 -2.1 chorismate synthase compare
AO353_25960 -1.3 -4.7 threonine dehydratase compare
AO353_01210 -1.3 -7.6 GntR family transcriptional regulator compare
AO353_24535 -1.3 -1.9 hypothetical protein compare
AO353_18780 -1.3 -3.3 cobyrinic acid a,c-diamide synthase compare
AO353_08015 -1.3 -2.8 5,10-methylenetetrahydrofolate reductase compare
AO353_03020 -1.3 -3.6 arginine N-succinyltransferase compare
AO353_24130 -1.3 -2.0 hypothetical protein compare
AO353_09785 -1.3 -2.1 hypothetical protein compare
AO353_12650 -1.3 -1.1 hypothetical protein compare
AO353_12240 -1.3 -2.7 histidine utilization repressor compare
AO353_05010 -1.2 -1.6 HopJ type III effector protein compare
AO353_12145 -1.2 -2.2 nitrogen regulation protein NR(I) compare
AO353_09000 -1.2 -2.1 argininosuccinate lyase compare
AO353_17520 -1.2 -2.2 hypothetical protein compare
AO353_02970 -1.2 -2.2 carbon storage regulator compare
AO353_00265 -1.2 -2.3 hypothetical protein compare
AO353_15250 -1.2 -1.1 cytochrome B compare
AO353_20185 -1.2 -2.9 DNA-binding protein compare
AO353_06405 -1.2 -2.7 hypothetical protein compare
AO353_09265 -1.2 -1.5 hypothetical protein compare
AO353_02270 -1.1 -2.7 isochorismatase compare
AO353_05625 -1.1 -1.0 transcription elongation factor GreA compare
AO353_02520 -1.1 -1.6 sodium transporter compare
AO353_27995 -1.1 -2.4 RpiR family transcriptional regulator compare
AO353_07560 -1.1 -5.7 malate synthase G compare
AO353_17205 -1.1 -1.6 beta-ketoadipyl CoA thiolase compare
AO353_08165 -1.1 -1.0 pyrroline-5-carboxylate reductase compare
AO353_09905 -1.1 -4.6 phosphate-binding protein compare
AO353_20175 -1.1 -1.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_21480 -1.1 -3.8 Cro/Cl family transcriptional regulator compare
AO353_02195 -1.1 -2.5 spermidine synthase compare
AO353_03015 -1.1 -2.2 arginine N-succinyltransferase compare
AO353_21625 -1.1 -1.0 Fe/S biogenesis protein NfuA compare
AO353_15830 -1.1 -1.6 transcriptional regulator compare
AO353_20810 -1.0 -1.5 hypothetical protein compare
AO353_16710 -1.0 -1.7 hypothetical protein compare
AO353_22520 -1.0 -1.5 hypothetical protein compare
AO353_11165 -1.0 -4.4 hypothetical protein compare
AO353_21615 -1.0 -4.9 methionine synthase compare
AO353_11920 -1.0 -1.9 hypothetical protein compare
AO353_02465 -1.0 -1.4 hypothetical protein compare
AO353_17085 -1.0 -1.5 hypothetical protein compare
AO353_02005 -1.0 -1.5 hypothetical protein compare
AO353_11530 -1.0 -3.9 diguanylate cyclase compare
AO353_26620 -1.0 -2.3 ArsR family transcriptional regulator compare
AO353_14930 -1.0 -1.8 GntR family transcriptional regulator compare
AO353_14500 -1.0 -2.5 acetolactate synthase 3 regulatory subunit compare
AO353_09890 -1.0 -2.2 phosphate ABC transporter ATP-binding protein compare
AO353_22800 -1.0 -1.4 sulfite reductase compare
AO353_28295 -1.0 -1.6 GNAT family acetyltransferase compare
AO353_02710 -1.0 -3.8 (p)ppGpp synthetase compare
AO353_15730 -1.0 -1.4 hypothetical protein compare
AO353_03290 -0.9 -1.1 peptide deformylase compare
AO353_00495 -0.9 -1.1 DNA topoisomerase I compare
AO353_20095 -0.9 -2.8 histidine kinase compare
AO353_00760 -0.9 -1.2 hypothetical protein compare
AO353_24180 -0.9 -2.7 transcriptional regulator compare
AO353_16835 -0.9 -1.5 LuxR family transcriptional regulator compare
AO353_04775 -0.9 -2.4 hypothetical protein compare
AO353_14405 -0.9 -5.0 ATPase compare
AO353_03715 -0.9 -1.1 H-NS histone compare
AO353_08100 -0.9 -1.7 chemotaxis protein CheY compare
AO353_19360 -0.9 -1.2 peroxiredoxin compare
AO353_14370 -0.9 -2.7 glucose-6-phosphate isomerase compare
AO353_00610 -0.9 -1.3 cytochrome C oxidase Cbb3 compare
AO353_20585 -0.9 -1.9 TetR family transcriptional regulator compare
AO353_07505 -0.9 -3.6 dethiobiotin synthetase compare
AO353_03580 -0.9 -1.5 ATP-dependent DNA helicase RuvB compare
AO353_07195 -0.9 -2.1 peroxiredoxin compare
AO353_12500 -0.9 -0.6 shikimate kinase compare
AO353_26785 -0.9 -2.8 hypothetical protein compare
AO353_17175 -0.9 -1.6 beta-ketoadipyl CoA thiolase compare
AO353_03195 -0.9 -2.5 transcriptional regulator compare
AO353_02060 -0.9 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_09340 -0.9 -1.8 hypothetical protein compare
AO353_09860 -0.9 -4.6 histidine kinase compare
AO353_03615 -0.9 -0.6 cold-shock protein compare
AO353_10045 -0.9 -2.3 hypothetical protein compare
AO353_29005 -0.9 -1.5 hypothetical protein compare
AO353_19520 -0.9 -2.2 quinohemoprotein amine dehydrogenase subunit alpha compare
AO353_14595 -0.9 -3.6 carbonate dehydratase compare
AO353_01615 -0.9 -2.2 pilus assembly protein PilA compare
AO353_10705 -0.9 -1.6 tryptophan synthase subunit alpha compare
AO353_10440 -0.9 -2.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_12810 -0.8 -5.6 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) compare
AO353_07255 -0.8 -5.8 polyamine ABC transporter substrate-binding protein compare
AO353_19280 -0.8 -1.3 hypothetical protein compare
AO353_27335 -0.8 -1.2 hypothetical protein compare
AO353_04065 -0.8 -2.0 electron transporter RnfB compare
AO353_00325 -0.8 -2.4 pilus assembly protein compare
AO353_03130 -0.8 -1.4 hypothetical protein compare
AO353_11450 -0.8 -2.4 hypothetical protein compare
AO353_12075 -0.8 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_26990 -0.8 -1.7 hypothetical protein compare
AO353_27675 -0.8 -3.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_24885 -0.8 -2.4 Crp/Fnr family transcriptional regulator compare
AO353_17160 -0.8 -1.3 aspartate-semialdehyde dehydrogenase compare
AO353_22580 -0.8 -1.7 3-demethylubiquinone-9 3-methyltransferase compare
AO353_09240 -0.8 -1.1 acetylglutamate kinase compare
AO353_05005 -0.8 -2.1 hypothetical protein compare
AO353_18505 -0.8 -1.1 translation initiation factor 2 compare
AO353_04005 -0.8 -2.3 hypothetical protein compare
AO353_02720 -0.8 -2.4 cysteine synthase compare
AO353_21455 -0.8 -1.1 cation:proton antiporter compare
AO353_09140 -0.8 -3.3 XRE family transcriptional regulator compare
AO353_26465 -0.8 -2.1 hypothetical protein compare
AO353_19055 -0.8 -3.3 universal stress protein UspA compare
AO353_17540 -0.8 -1.5 helicase compare
AO353_08085 -0.8 -4.6 histidine kinase compare
AO353_17110 -0.8 -2.0 ABC transporter ATP-binding protein compare
AO353_28340 -0.8 -2.6 AAA family ATPase compare
AO353_08350 -0.8 -3.0 hypothetical protein compare
AO353_10550 -0.8 -2.4 glutamine amidotransferase compare
AO353_04275 -0.8 -2.5 polyamine ABC transporter ATP-binding protein compare
AO353_16740 -0.8 -1.7 phage tail protein compare
AO353_03505 -0.8 -2.9 serine dehydratase compare
AO353_19180 -0.8 -2.0 GAF domain-containing protein compare
AO353_27650 -0.8 -1.8 cell division protein FtsK compare
AO353_03100 -0.7 -1.2 XRE family transcriptional regulator compare
AO353_05530 -0.7 -2.1 hypothetical protein compare
AO353_10070 -0.7 -3.7 cell wall assembly protein compare
AO353_16450 -0.7 -4.3 protein-PII uridylyltransferase compare
AO353_03500 -0.7 -4.0 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) compare
AO353_14395 -0.7 -1.5 poly(A) polymerase compare
AO353_12115 -0.7 -0.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_25575 -0.7 -2.0 GNAT family acetyltransferase compare
AO353_24425 -0.7 -1.4 amino acid ABC transporter permease compare
AO353_03935 -0.7 -1.9 fructose-bisphosphate aldolase compare
AO353_19090 -0.7 -0.9 MarR family transcriptional regulator compare
AO353_06155 -0.7 -3.4 copper-transporting ATPase compare
AO353_18775 -0.7 -2.5 flagellar biosynthesis protein FlhF compare
AO353_01425 -0.7 -2.2 (2Fe-2S)-binding protein compare
AO353_22510 -0.7 -1.6 hypothetical protein compare
AO353_01990 -0.7 -2.6 UDP-N-acetylglucosamine 2-epimerase compare
AO353_28015 -0.7 -1.4 hypothetical protein compare
AO353_04220 -0.7 -2.3 chemotaxis protein CheY compare
AO353_21770 -0.7 -1.6 3-hydroxybutyrate dehydrogenase compare
AO353_08765 -0.7 -1.9 hypothetical protein compare
AO353_27060 -0.7 -1.7 XshC-Cox1 family protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Serine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Serine across organisms