Experiment set2IT044 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Serine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_08465 +6.7 60.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_16615 +6.7 52.8 RNA polymerase sigma factor RpoS compare
AO353_14420 +6.3 21.6 molecular chaperone DnaK compare
AO353_21830 +6.0 51.1 chemotaxis protein CheY compare
AO353_02735 +5.9 49.9 chemotaxis protein CheY compare
AO353_03510 +4.8 24.1 glycine cleavage system protein T compare
AO353_09060 +4.6 18.6 hypothetical protein compare
AO353_08470 +4.5 9.4 RNA pyrophosphohydrolase compare
AO353_19340 +3.9 33.7 amino acid ABC transporter substrate-binding protein compare
AO353_20925 +3.4 2.7 hypothetical protein compare
AO353_08885 +3.0 27.4 polyphosphate kinase compare
AO353_07340 +2.6 23.6 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_26840 +2.5 2.0 RND transporter compare
AO353_07335 +2.5 23.3 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_13300 +2.5 1.8 LOG family protein compare
AO353_07345 +2.5 23.1 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO353_05195 +2.5 15.2 glmZ(sRNA)-inactivating NTPase compare
AO353_11155 +2.4 20.5 thioesterase compare
AO353_01055 +2.3 20.1 AraC family transcriptional regulator compare
AO353_01070 +2.1 18.7 poly(R)-hydroxyalkanoic acid synthase compare
AO353_01065 +2.1 12.5 acetyl-CoA acetyltransferase compare
AO353_01045 +2.0 6.9 phasin compare
AO353_11160 +2.0 10.5 GntR family transcriptional regulator compare
AO353_01060 +2.0 13.6 3-ketoacyl-ACP reductase compare
AO353_17475 +1.9 5.3 hypothetical protein compare
AO353_00165 +1.9 1.8 lysis protein compare
AO353_19145 +1.7 3.0 protease HtpX compare
AO353_26525 +1.7 2.5 hypothetical protein compare
AO353_12720 +1.6 1.9 hypothetical protein compare
AO353_24175 +1.5 2.0 hypothetical protein compare
AO353_00890 +1.5 6.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_18465 +1.5 2.5 phosphohydrolase compare
AO353_13005 +1.5 12.0 channel protein TolC compare
AO353_12420 +1.4 5.0 predicted FeS cluster maintenance protein (from data) compare
AO353_06205 +1.4 3.0 hypothetical protein compare
AO353_02975 +1.3 3.0 aspartate kinase compare
AO353_17935 +1.3 2.5 hypothetical protein compare
AO353_22845 +1.3 2.0 GNAT family acetyltransferase compare
AO353_26815 +1.3 1.3 transcriptional regulator compare
AO353_19025 +1.3 10.5 acetyltransferase compare
AO353_22975 +1.2 1.1 alanine acetyltransferase compare
AO353_03495 +1.2 3.2 glycine cleavage system protein H compare
AO353_27235 +1.2 2.5 hypothetical protein compare
AO353_25450 +1.2 2.9 cyanate hydratase compare
AO353_14225 +1.2 8.2 laccase compare
AO353_19040 +1.2 7.5 thioredoxin compare
AO353_13220 +1.1 5.2 hypothetical protein compare
AO353_00590 +1.1 2.5 cytochrome C oxidase Cbb3 compare
AO353_17985 +1.1 2.5 LysR family transcriptional regulator compare
AO353_04185 +1.1 5.5 DeoR family transcriptional regulator compare
AO353_13660 +1.1 6.6 tRNA-dihydrouridine synthase B compare
AO353_00105 +1.1 2.1 hypothetical protein compare
AO353_04190 +1.1 2.4 glycerol-3-phosphate dehydrogenase compare
AO353_18540 +1.1 2.9 pseudouridine synthase compare
AO353_15535 +1.1 2.2 hypothetical protein compare
AO353_10085 +1.1 1.8 pyridoxamine kinase compare
AO353_06490 +1.1 3.4 nicotinate-nucleotide adenylyltransferase compare
AO353_20380 +1.0 6.8 acyl-CoA dehydrogenase compare
AO353_08730 +1.0 6.6 glycine cleavage system protein H compare
AO353_21810 +1.0 1.9 alpha/beta hydrolase compare
AO353_13070 +1.0 6.3 phosphoserine phosphatase compare
AO353_14440 +1.0 1.5 ABC transporter substrate-binding protein compare
AO353_26070 +1.0 2.4 hypothetical protein compare
AO353_06135 +1.0 1.9 NADPH:quinone reductase compare
AO353_26260 +1.0 2.6 hypothetical protein compare
AO353_26945 +1.0 2.2 transcriptional regulator compare
AO353_02100 +1.0 3.2 phosphoglycolate phosphatase compare
AO353_23780 +1.0 1.9 hydroxyacid dehydrogenase compare
AO353_01375 +1.0 5.2 phosphate acyltransferase compare
AO353_05490 +1.0 5.1 transcriptional regulator compare
AO353_07670 +1.0 6.2 L-threonine aldolase (EC 4.1.2.5) (from data) compare
AO353_25480 +1.0 1.9 multidrug transporter compare
AO353_19335 +1.0 6.8 TetR family transcriptional regulator compare
AO353_25585 +1.0 1.8 argininosuccinate lyase compare
AO353_05130 +1.0 1.8 anti-anti-sigma factor compare
AO353_07780 +1.0 6.5 Carnitine ABC transporter, substrate-binding component CaiX (from data) compare
AO353_17855 +1.0 2.6 ribonuclease D compare
AO353_06365 +1.0 7.7 hypothetical protein compare
AO353_04950 +1.0 2.7 antibiotic biosynthesis monooxygenase compare
AO353_02020 +0.9 1.8 hypothetical protein compare
AO353_02675 +0.9 2.5 hypothetical protein compare
AO353_20300 +0.9 6.1 anti-sigma factor compare
AO353_13920 +0.9 2.2 dihydroxyacetone kinase compare
AO353_25300 +0.9 2.1 LysR family transcriptional regulator compare
AO353_11455 +0.9 1.5 hypothetical protein compare
AO353_19035 +0.9 5.0 pilus assembly protein PilZ compare
AO353_27890 +0.9 4.5 RpiR family transcriptional regulator compare
AO353_06550 +0.9 6.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
AO353_13135 +0.9 3.4 DNA mismatch repair protein compare
AO353_12015 +0.9 2.1 antitoxin compare
AO353_23385 +0.9 2.2 trans-2-enoyl-CoA reductase compare
AO353_22675 +0.9 2.3 hypothetical protein compare
AO353_24495 +0.9 3.6 malate permease compare
AO353_20785 +0.9 3.5 carbon storage regulator CsrA compare
AO353_08300 +0.9 2.4 GMC family oxidoreductase compare
AO353_12130 +0.9 1.5 preprotein translocase subunit SecB compare
AO353_02335 +0.9 1.5 ureidoglycolate hydrolase compare
AO353_01975 +0.9 5.0 glycosyl transferase compare
AO353_04520 +0.9 3.1 elongation factor 4 compare
AO353_12935 +0.9 2.9 glycosyltransferase compare
AO353_09065 +0.9 4.4 hypothetical protein compare
AO353_25610 +0.9 1.9 polysaccharide deacetylase compare
AO353_01905 +0.8 2.0 TetR family transcriptional regulator compare
AO353_08865 +0.8 1.7 ABC transporter permease compare
AO353_04100 +0.8 2.2 hypothetical protein compare
AO353_10770 +0.8 2.2 anhydrase compare
AO353_18060 +0.8 2.4 fimbrial protein compare
AO353_27155 +0.8 1.7 hypothetical protein compare
AO353_20425 +0.8 1.6 ArsC family transcriptional regulator compare
AO353_09875 +0.8 1.7 hypothetical protein compare
AO353_00930 +0.8 3.3 phosphoserine phosphatase compare
AO353_16725 +0.8 1.6 hypothetical protein compare
AO353_27710 +0.8 1.6 DNA repair protein compare
AO353_11770 +0.8 1.5 molecular chaperone Hsp33 compare
AO353_19045 +0.8 4.3 2-dehydropantoate 2-reductase compare
AO353_16360 +0.8 5.0 RND transporter compare
AO353_07645 +0.8 1.1 sarcosine oxidase subunit gamma compare
AO353_25850 +0.8 1.9 peptidase C45 compare
AO353_21945 +0.8 2.3 protein nirL compare
AO353_24570 +0.8 2.5 hypothetical protein compare
AO353_08965 +0.8 4.1 transcriptional regulator compare
AO353_12455 +0.8 2.4 nuclease compare
AO353_17515 +0.8 1.2 short-chain dehydrogenase compare
AO353_13140 +0.8 3.2 tRNA dimethylallyltransferase compare
AO353_20455 +0.8 1.4 HAD family hydrolase compare
AO353_27005 +0.8 2.3 proline hydroxylase compare
AO353_08245 +0.8 1.4 cell division ATP-binding protein FtsE compare
AO353_24870 +0.8 1.9 hypothetical protein compare
AO353_28395 +0.8 2.7 haloacid dehalogenase compare
AO353_14450 +0.8 1.6 hemin ABC transporter ATP-binding protein compare
AO353_02205 +0.8 2.2 hypothetical protein compare
AO353_00460 +0.8 2.0 TetR family transcriptional regulator compare
AO353_12895 +0.8 1.4 lipopolysaccharide kinase compare
AO353_12360 +0.8 4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_27905 +0.8 3.3 N-formylglutamate amidohydrolase compare
AO353_08395 +0.8 1.9 FAD-dependent oxidoreductase compare
AO353_24840 +0.8 1.9 acyl-CoA synthetase compare
AO353_22985 +0.8 1.9 hypothetical protein compare
AO353_11385 +0.8 2.7 poly-beta-1,6 N-acetyl-D-glucosamine synthase compare
AO353_21160 +0.8 2.2 transposase compare
AO353_05070 +0.7 1.9 acyltransferase compare
AO353_03515 +0.7 1.3 cold-shock protein compare
AO353_19020 +0.7 2.2 hypothetical protein compare
AO353_10995 +0.7 5.1 hypothetical protein compare
AO353_16365 +0.7 6.3 multidrug transporter AcrB compare
AO353_26195 +0.7 1.6 hypothetical protein compare
AO353_00235 +0.7 1.8 transcriptional regulator compare
AO353_10510 +0.7 1.1 benzoate transporter compare
AO353_20815 +0.7 2.0 LacI family transcriptional regulator compare
AO353_25500 +0.7 1.9 phosphoglycerate mutase compare
AO353_25320 +0.7 1.9 phosphoribosyl-dephospho-CoA transferase compare
AO353_20270 +0.7 2.2 spore coat protein compare
AO353_14835 +0.7 4.1 FAD-dependent oxidoreductase compare
AO353_01100 +0.7 2.3 lysine transporter LysE compare
AO353_08980 +0.7 1.5 heme biosynthesis operon protein HemX compare
AO353_10780 +0.7 1.2 DNA-binding protein compare
AO353_28375 +0.7 2.9 MFS transporter compare
AO353_06720 +0.7 1.6 NrdR family transcriptional regulator compare
AO353_28150 +0.7 1.6 arginine aminotransferase compare
AO353_24340 +0.7 1.3 TetR family transcriptional regulator compare
AO353_21440 +0.7 2.1 hypothetical protein compare
AO353_11330 +0.7 2.9 hypothetical protein compare
AO353_18285 +0.7 2.0 3-phosphoglycerate kinase compare
AO353_01800 +0.7 2.5 hypothetical protein compare
AO353_24415 +0.7 1.1 glutamine ABC transporter ATP-binding protein compare
AO353_01795 +0.7 1.4 hypothetical protein compare
AO353_01050 +0.7 5.7 poly(3-hydroxyalkanoate) synthetase compare
AO353_03820 +0.7 2.1 Asp/Glu/hydantoin racemase compare
AO353_12315 +0.7 4.1 glucosyltransferase MdoH compare
AO353_15885 +0.7 2.9 Cro/Cl family transcriptional regulator compare
AO353_12870 +0.7 4.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_06455 +0.7 1.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_09275 +0.7 1.8 DNA-directed RNA polymerase subunit omega compare
AO353_00900 +0.7 3.9 2-methylisocitrate lyase compare
AO353_04625 +0.7 5.0 ATP-dependent RNA helicase RhlB compare
AO353_11945 +0.7 0.9 4-oxalocrotonate tautomerase compare
AO353_05240 +0.7 1.7 rod shape-determining protein MreD compare
AO353_14655 +0.7 4.0 transcriptional regulator compare
AO353_04535 +0.7 4.2 aminopeptidase compare
AO353_05280 +0.7 1.5 4-carboxymuconolactone decarboxylase compare
AO353_09560 +0.7 0.9 type VI secretion protein compare
AO353_24440 +0.6 0.8 reactive intermediate/imine deaminase compare
AO353_09040 +0.6 1.1 diaminopimelate epimerase compare
AO353_13225 +0.6 1.7 50S ribosomal protein L9 compare
AO353_11775 +0.6 3.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_22370 +0.6 1.9 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_17840 +0.6 1.8 transcriptional regulator compare
AO353_15170 +0.6 1.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_27460 +0.6 1.7 hypothetical protein compare
AO353_18590 +0.6 2.7 AAA family ATPase compare
AO353_28640 +0.6 1.8 hypothetical protein compare
AO353_03210 +0.6 1.9 GNAT family acetyltransferase compare
AO353_08945 +0.6 2.8 ABC transporter ATP-binding protein compare
AO353_02260 +0.6 2.8 hypothetical protein compare
AO353_00635 +0.6 1.7 hypothetical protein compare
AO353_02580 +0.6 5.4 Long-chain fatty acid transport protein compare
AO353_05065 +0.6 2.3 phosphate acetyltransferase compare
AO353_16645 +0.6 2.0 hypothetical protein compare
AO353_21300 +0.6 2.1 glycolate oxidase iron-sulfur subunit compare
AO353_26165 +0.6 1.8 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Serine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Serine across organisms