Experiment set2IT044 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_1224 +2.0 15.6 sodium:dicarboxylate symporter (RefSeq) compare
Shew_2642 +2.0 4.8 flavodoxin (RefSeq) compare
Shew_2049 +1.9 5.5 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_0296 +1.9 1.6 heat shock protein Hsp20 (RefSeq) compare
Shew_2572 +1.8 8.0 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_3660 +1.8 14.4 glutathione reductase (RefSeq) compare
Shew_3377 +1.8 0.9 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_1202 +1.7 8.7 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1601 +1.6 2.6 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_3500 +1.6 3.2 putative endoribonuclease L-PSP (RefSeq) compare
Shew_0462 +1.6 1.8 hypothetical protein (RefSeq) compare
Shew_1092 +1.5 7.7 amino acid carrier protein (RefSeq) compare
Shew_2327 +1.5 1.0 hypothetical protein (RefSeq) compare
Shew_3378 +1.4 1.8 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_3267 +1.3 6.2 sodium/hydrogen exchanger (RefSeq) compare
Shew_3681 +1.3 10.2 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1227 +1.3 1.9 glutamate--cysteine ligase (RefSeq) compare
Shew_1341 +1.3 3.5 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_1819 +1.3 3.1 GntR family transcriptional regulator (RefSeq) compare
Shew_0127 +1.3 3.5 LexA repressor (RefSeq) compare
Shew_3295 +1.3 6.5 AFG1 family ATPase (RefSeq) compare
Shew_3273 +1.3 4.0 hypothetical protein (RefSeq) compare
Shew_2785 +1.3 1.2 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_3483 dut +1.2 1.5 deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) compare
Shew_2061 +1.2 2.0 radical SAM domain-containing protein (RefSeq) compare
Shew_3710 tdh +1.2 6.5 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_0570 +1.2 1.2 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_0755 +1.2 2.5 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_3442 +1.1 2.7 hypothetical protein (RefSeq) compare
Shew_2320 +1.1 5.7 RNA methyltransferase (RefSeq) compare
Shew_0343 +1.1 1.5 hypothetical protein (RefSeq) compare
Shew_2906 +1.1 1.1 hypothetical protein (RefSeq) compare
Shew_3682 +1.1 6.8 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1186 +1.1 2.7 transcriptional regulator NrdR (RefSeq) compare
Shew_1714 +1.1 2.1 alpha/beta hydrolase fold (RefSeq) compare
Shew_1713 +1.1 2.5 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1078 +1.1 5.9 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_1058 +1.1 4.2 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_3262 +1.1 1.1 hypothetical protein (RefSeq) compare
Shew_0421 +1.0 1.5 phage shock protein C, PspC (RefSeq) compare
Shew_1298 guaA +1.0 6.0 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_3432 pdhR +1.0 2.7 transcriptional regulator PdhR (RefSeq) compare
Shew_0799 +1.0 2.2 MarR family transcriptional regulator (RefSeq) compare
Shew_1995 +1.0 1.6 PP-loop domain-containing protein (RefSeq) compare
Shew_1992 +1.0 2.1 hypothetical protein (RefSeq) compare
Shew_1514 upp +1.0 3.2 uracil phosphoribosyltransferase (RefSeq) compare
Shew_2656 +0.9 4.6 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_2282 +0.9 1.2 Fis family transcriptional regulator (RefSeq) compare
Shew_3683 +0.9 4.6 extracellular solute-binding protein (RefSeq) compare
Shew_2035 +0.9 1.7 hypothetical protein (RefSeq) compare
Shew_2668 +0.9 5.1 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_0115 +0.9 1.3 hypothetical protein (RefSeq) compare
Shew_2241 +0.9 1.6 hypothetical protein (RefSeq) compare
Shew_1865 +0.9 2.8 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1961 +0.9 1.7 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_2646 +0.9 0.8 hypothetical protein (RefSeq) compare
Shew_1050 +0.9 3.8 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_3063 +0.9 1.4 glycine cleavage system protein H (RefSeq) compare
Shew_1822 +0.9 2.4 aconitate hydratase (RefSeq) compare
Shew_2573 +0.9 5.2 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_1812 +0.9 4.2 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_3709 +0.9 5.9 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_0220 +0.8 2.5 phosphoglycolate phosphatase (RefSeq) compare
Shew_2667 +0.8 5.9 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2666 +0.8 4.6 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_1563 +0.8 5.1 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1820 prpB +0.8 3.3 2-methylisocitrate lyase (RefSeq) compare
Shew_3247 +0.8 0.9 hypothetical protein (RefSeq) compare
Shew_2155 +0.8 2.5 4-hydroxyphenylpyruvate dioxygenase (RefSeq) compare
Shew_2153 +0.8 1.1 LysR family transcriptional regulator (RefSeq) compare
Shew_3131 +0.8 5.1 poly(A) polymerase (RefSeq) compare
Shew_2665 +0.8 6.1 beta-ketoacyl synthase (RefSeq) compare
Shew_0695 +0.8 1.3 hypothetical protein (RefSeq) compare
Shew_2571 +0.8 4.0 propionyl-CoA carboxylase (RefSeq) compare
Shew_0833 +0.8 1.0 hypoxanthine-guanine phosphoribosyltransferase (RefSeq) compare
Shew_3537 +0.8 1.6 hypothetical protein (RefSeq) compare
Shew_2422 +0.8 1.6 hypothetical protein (RefSeq) compare
Shew_2644 +0.8 2.1 hypothetical protein (RefSeq) compare
Shew_1602 +0.8 1.7 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_0057 +0.8 1.7 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_3487 pyrE +0.8 2.3 orotate phosphoribosyltransferase (RefSeq) compare
Shew_0647 +0.8 2.0 hypothetical protein (RefSeq) compare
Shew_3598 +0.7 0.8 AsnC family transcriptional regulator (RefSeq) compare
Shew_3389 +0.7 1.5 hypothetical protein (RefSeq) compare
Shew_1851 +0.7 0.6 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_0450 +0.7 2.5 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_0594 +0.7 1.6 hypothetical protein (RefSeq) compare
Shew_3605 +0.7 0.7 cell division ATP-binding protein FtsE (RefSeq) compare
Shew_0782 +0.7 1.4 DNA-binding transcriptional regulator AsnC (RefSeq) compare
Shew_2664 +0.7 4.1 transcriptional regulator, putative (RefSeq) compare
Shew_2957 +0.7 2.7 hypothetical protein (RefSeq) compare
Shew_0763 +0.7 4.7 putative PAS/PAC sensor protein (RefSeq) compare
Shew_2458 +0.7 0.6 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_2389 +0.7 2.3 hypothetical protein (RefSeq) compare
Shew_2643 +0.7 0.9 pseudouridylate synthase (RefSeq) compare
Shew_2148 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_1230 +0.7 2.8 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) compare
Shew_3528 +0.7 1.5 rhodanese domain-containing protein (RefSeq) compare
Shew_1387 +0.7 1.0 chemotaxis-specific methylesterase (RefSeq) compare
Shew_1660 +0.7 0.8 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0430 +0.7 1.5 histone family protein DNA-binding protein (RefSeq) compare
Shew_2175 nhaB +0.7 2.8 sodium/proton antiporter (RefSeq) compare
Shew_1731 +0.7 0.5 histidine triad (HIT) protein (RefSeq) compare
Shew_1781 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_0086 +0.6 5.2 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_0091 +0.6 3.3 molybdopterin biosynthesis MoaE (RefSeq) compare
Shew_1732 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_3064 gcvT +0.6 3.2 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_2025 +0.6 3.6 leucine-responsive transcriptional regulator (RefSeq) compare
Shew_2402 +0.6 0.6 ABC transporter-related protein (RefSeq) compare
Shew_3364 +0.6 1.5 acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq) compare
Shew_1662 +0.6 0.8 NAD-dependent deacetylase (RefSeq) compare
Shew_2884 +0.6 1.1 glycine cleavage system regulatory protein-like protein (RefSeq) compare
Shew_1281 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_1657 sucC +0.6 0.8 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_1470 +0.6 2.7 sulfatase (RefSeq) compare
Shew_3716 +0.6 1.7 cytochrome c, class I (RefSeq) compare
Shew_1969 +0.6 1.4 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_1926 +0.6 1.3 transketolase, central region (RefSeq) compare
Shew_0459 +0.6 2.3 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_2687 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_2481 +0.6 2.8 porin (RefSeq) compare
Shew_2544 +0.6 1.1 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_2106 +0.6 2.8 hypothetical protein (RefSeq) compare
Shew_0434 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_0136 +0.6 3.9 stearoyl-CoA 9-desaturase (RefSeq) compare
Shew_1741 +0.6 1.3 beta-lactamase domain-containing protein (RefSeq) compare
Shew_2895 +0.6 1.8 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_0383 +0.6 3.1 malate dehydrogenase (RefSeq) compare
Shew_3711 +0.6 0.6 rhodanese domain-containing protein (RefSeq) compare
Shew_3156 +0.6 1.8 hypothetical protein (RefSeq) compare
Shew_3772 +0.6 0.9 thioesterase superfamily protein (RefSeq) compare
Shew_1315 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_2367 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_R0076 +0.6 0.7 tRNA-Asn (RefSeq) compare
Shew_1235 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_1932 cls +0.6 1.7 cardiolipin synthetase (RefSeq) compare
Shew_3225 +0.6 2.2 glutathione synthetase (RefSeq) compare
Shew_1173 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_2403 +0.6 0.8 arylesterase (RefSeq) compare
Shew_3062 +0.6 4.4 glycine dehydrogenase (RefSeq) compare
Shew_1810 +0.6 2.0 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_0860 +0.6 0.6 hypothetical protein (RefSeq) compare
Shew_1782 +0.6 3.8 MarR family transcriptional regulator (RefSeq) compare
Shew_0206 +0.6 2.7 argininosuccinate lyase (RefSeq) compare
Shew_0676 +0.6 2.6 putative lipoprotein (RefSeq) compare
Shew_2582 +0.6 1.6 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_2494 +0.6 1.2 phage shock protein C, PspC (RefSeq) compare
Shew_1542 +0.6 2.4 major facilitator transporter (RefSeq) compare
Shew_1607 +0.5 0.8 thioesterase superfamily protein (RefSeq) compare
Shew_0827 +0.5 0.6 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1300 +0.5 2.2 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1163 +0.5 1.1 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_1456 +0.5 1.9 phospholipase D/transphosphatidylase (RefSeq) compare
Shew_1461 +0.5 1.7 zinc carboxypeptidase-related protein (RefSeq) compare
Shew_1811 +0.5 2.4 hypothetical protein (RefSeq) compare
Shew_2751 rdgC +0.5 1.5 recombination associated protein (RefSeq) compare
Shew_3495 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_1929 +0.5 1.8 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_3699 +0.5 1.9 glycosyl transferase family protein (RefSeq) compare
Shew_0788 +0.5 1.1 dienelactone hydrolase (RefSeq) compare
Shew_2026 +0.5 1.3 alanine dehydrogenase (RefSeq) compare
Shew_3336 +0.5 0.9 MarR family transcriptional regulator (RefSeq) compare
Shew_3394 +0.5 0.5 MscS mechanosensitive ion channel (RefSeq) compare
Shew_3532 +0.5 2.1 globin (RefSeq) compare
Shew_0226 +0.5 1.8 hypothetical protein (RefSeq) compare
Shew_0507 +0.5 1.9 NADH:flavin oxidoreductase/NADH oxidase (RefSeq) compare
Shew_3388 +0.5 0.3 hypothetical protein (RefSeq) compare
Shew_1072 +0.5 1.9 chorismate mutase (RefSeq) compare
Shew_1780 +0.5 1.6 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_1592 +0.5 1.0 sulphate transporter (RefSeq) compare
Shew_1357 +0.5 2.0 flagellin domain-containing protein (RefSeq) compare
Shew_1783 +0.5 1.7 secretion protein HlyD family protein (RefSeq) compare
Shew_0797 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_3687 +0.5 3.9 molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq) compare
Shew_3476 +0.5 2.0 transporter DMT superfamily protein (RefSeq) compare
Shew_1116 +0.5 1.9 N-acetylglucosamine kinase (EC 2.7.1.59) (from data) compare
Shew_1677 +0.5 1.5 leucyl aminopeptidase (RefSeq) compare
Shew_0889 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_2395 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_2652 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_2199 +0.5 1.1 histidinol-phosphate aminotransferase (RefSeq) compare
Shew_0821 +0.5 0.8 mitomycin resistance protein (RefSeq) compare
Shew_3805 +0.5 1.7 rhodanese domain-containing protein (RefSeq) compare
Shew_2258 +0.5 0.7 NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (RefSeq) compare
Shew_3069 +0.5 0.6 5-formyltetrahydrofolate cyclo-ligase (RefSeq) compare
Shew_0449 +0.5 1.0 ABC-3 protein (RefSeq) compare
Shew_2053 +0.5 1.7 peptidyl-dipeptidase A (RefSeq) compare
Shew_2708 +0.5 1.2 Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) compare
Shew_3664 +0.5 3.1 alpha-L-glutamate ligase (RefSeq) compare
Shew_2453 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_1498 +0.5 2.2 hypothetical protein (RefSeq) compare
Shew_3512 +0.5 1.2 acyl carrier protein (RefSeq) compare
Shew_3363 +0.5 0.8 3-dehydroquinate dehydratase, type II (RefSeq) compare
Shew_0728 +0.5 2.7 dihydroorotase (RefSeq) compare
Shew_2705 +0.5 1.1 Na(+)-translocating NADH-quinone reductase subunit E (RefSeq) compare
Shew_1432 +0.5 0.7 ferredoxin-type protein NapF (RefSeq) compare
Shew_1679 +0.5 0.6 TetR family transcriptional regulator (RefSeq) compare
Shew_1682 +0.5 0.8 ribonuclease H (RefSeq) compare
Shew_0888 +0.5 2.8 no description compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments