Experiment set2IT044 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS09375 -5.1 -2.3 hypothetical protein compare
MMJJ_RS04485 -4.5 -12.2 riboflavin synthase compare
MMJJ_RS04200 -4.0 -7.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS04475 -3.9 -4.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS09190 -3.9 -2.4 tryptophan synthase subunit beta compare
MMJJ_RS06625 -3.7 -2.6 pyruvate synthase subunit PorB compare
MMJJ_RS05445 -3.6 -2.5 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS06490 -3.6 -3.2 methanogenesis marker 2 protein compare
MMJJ_RS01755 -3.6 -3.2 ferrous iron transport protein B compare
MMJJ_RS02935 -3.4 -3.9 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS06240 -3.4 -3.3 dihydropteroate synthase-like protein compare
MMJJ_RS05610 -3.3 -4.9 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS03620 -3.3 -7.1 DUF2097 domain-containing protein compare
MMJJ_RS07380 -3.3 -10.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS00275 -3.2 -3.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05780 -3.2 -3.8 flagellin compare
MMJJ_RS07670 -3.2 -20.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS01870 -3.2 -2.9 methanogenesis marker 15 protein compare
MMJJ_RS03095 -3.1 -3.0 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06040 -3.1 -4.2 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07665 -3.1 -23.0 formate dehydrogenase subunit alpha compare
MMJJ_RS00050 -3.1 -13.0 AAA family ATPase compare
MMJJ_RS04800 -3.0 -6.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08625 -3.0 -9.4 magnesium/cobalt transporter CorA compare
MMJJ_RS03840 -3.0 -4.8 DHH family phosphoesterase compare
MMJJ_RS01935 -2.9 -4.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07660 -2.9 -11.5 carbonic anhydrase compare
MMJJ_RS00560 -2.9 -4.6 homoisocitrate dehydrogenase compare
MMJJ_RS08320 -2.9 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS08020 -2.9 -9.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS03760 -2.9 -3.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00045 -2.9 -15.5 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS05930 -2.9 -1.7 cell division protein SepF compare
MMJJ_RS06840 -2.8 -4.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05650 -2.8 -3.6 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS08005 -2.8 -18.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS03875 -2.8 -4.4 CBS domain-containing protein compare
MMJJ_RS06910 -2.8 -3.1 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS05260 -2.8 -6.3 ATP-grasp domain-containing protein compare
MMJJ_RS05575 -2.8 -4.3 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07655 -2.8 -15.1 hypothetical protein compare
MMJJ_RS05770 -2.7 -3.4 flagellar protein D compare
MMJJ_RS04685 -2.7 -10.8 carbamoyltransferase HypF compare
MMJJ_RS02200 -2.7 -10.3 chorismate pyruvate-lyase family protein compare
MMJJ_RS04155 -2.7 -7.7 hypothetical protein compare
MMJJ_RS04730 -2.7 -3.5 tyrosine decarboxylase MfnA compare
MMJJ_RS05490 -2.7 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS00060 -2.6 -15.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS07245 -2.6 -5.6 amidohydrolase family protein compare
MMJJ_RS00055 -2.6 -11.7 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS00035 -2.6 -16.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS01600 -2.6 -2.9 radical SAM protein compare
MMJJ_RS06860 -2.6 -3.2 hypothetical protein compare
MMJJ_RS00040 -2.5 -12.1 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS01360 -2.5 -2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS03200 -2.5 -3.2 uroporphyrinogen-III synthase compare
MMJJ_RS03670 -2.5 -5.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS05190 -2.5 -9.8 gamma carbonic anhydrase family protein compare
MMJJ_RS00065 -2.5 -12.3 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS03500 -2.5 -12.6 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS04655 -2.4 -6.6 FAD-dependent oxidoreductase compare
MMJJ_RS07720 -2.4 -2.3 UPF0058 family protein compare
MMJJ_RS04150 -2.4 -3.0 DUF5379 domain-containing protein compare
MMJJ_RS03865 -2.4 -1.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06485 -2.4 -3.3 phosphoglycerate kinase compare
MMJJ_RS00580 -2.4 -1.9 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS00080 -2.4 -14.6 DUF166 domain-containing protein compare
MMJJ_RS04985 -2.4 -4.3 glutamyl-tRNA reductase compare
MMJJ_RS03055 -2.4 -3.1 hypothetical protein compare
MMJJ_RS07000 -2.3 -1.8 TrkH family potassium uptake protein compare
MMJJ_RS06875 -2.3 -2.0 hypothetical protein compare
MMJJ_RS06510 -2.3 -3.1 LL-diaminopimelate aminotransferase compare
MMJJ_RS00270 -2.3 -3.1 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS02045 -2.3 -3.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06915 -2.3 -14.6 helix-turn-helix domain-containing protein compare
MMJJ_RS05065 -2.3 -4.1 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00075 -2.3 -12.2 AAA family ATPase compare
MMJJ_RS00125 -2.3 -3.0 KEOPS complex subunit Cgi121 compare
MMJJ_RS08095 -2.3 -4.4 cobyric acid synthase CobQ compare
MMJJ_RS07705 -2.2 -3.3 GTP-binding protein EngB compare
MMJJ_RS08335 -2.2 -2.1 ABC transporter ATP-binding protein compare
MMJJ_RS08055 -2.2 -6.0 methanogenesis marker 14 protein compare
MMJJ_RS05950 -2.2 -3.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05535 -2.2 -12.6 hypothetical protein compare
MMJJ_RS02090 -2.2 -5.8 tyramine--L-glutamate ligase compare
MMJJ_RS07640 -2.2 -17.9 cache domain-containing protein compare
MMJJ_RS03190 -2.2 -3.1 phosphopyruvate hydratase compare
MMJJ_RS06865 -2.2 -3.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03895 -2.2 -3.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS05810 -2.2 -6.7 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06940 -2.2 -9.3 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS08065 -2.2 -2.6 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS06390 -2.2 -2.0 NADPH-dependent F420 reductase compare
MMJJ_RS06270 -2.1 -9.0 dethiobiotin synthase compare
MMJJ_RS08080 -2.1 -10.2 TIGR00300 family protein compare
MMJJ_RS03580 -2.1 -3.3 TIGR00303 family protein compare
MMJJ_RS06750 -2.1 -2.2 homoaconitase large subunit compare
MMJJ_RS08840 -2.1 -4.1 calcium/sodium antiporter compare
MMJJ_RS04970 -2.1 -1.9 DUF655 domain-containing protein compare
MMJJ_RS03820 -2.1 -4.0 hydrogenase formation protein HypD compare
MMJJ_RS06805 -2.1 -3.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06725 -2.1 -11.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05620 -2.0 -4.8 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS07650 -2.0 -15.5 formate/nitrite transporter family protein compare
MMJJ_RS07350 -2.0 -2.4 4Fe-4S binding protein compare
MMJJ_RS08850 -2.0 -3.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS01750 -2.0 -3.0 ferrous iron transport protein A compare
MMJJ_RS05655 -2.0 -6.8 HisA/HisF family protein compare
MMJJ_RS06375 -2.0 -4.6 UbiX family flavin prenyltransferase compare
MMJJ_RS00475 -2.0 -2.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS07635 -2.0 -10.9 response regulator transcription factor compare
MMJJ_RS03150 -2.0 -6.3 2-phospho-L-lactate transferase compare
MMJJ_RS05935 -2.0 -2.1 Era-like GTP-binding protein compare
MMJJ_RS06155 -1.9 -4.9 phosphatidylglycerophosphatase A compare
MMJJ_RS06695 -1.9 -2.8 amidohydrolase compare
MMJJ_RS02920 -1.9 -2.3 30S ribosomal protein S27ae compare
MMJJ_RS07345 -1.9 -5.3 homocysteine biosynthesis protein compare
MMJJ_RS00570 -1.9 -1.5 ribonuclease P compare
MMJJ_RS05995 -1.9 -2.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS04520 -1.9 -3.7 coenzyme F430 synthase compare
MMJJ_RS06050 -1.9 -11.8 molybdopterin molybdotransferase MoeA compare
MMJJ_RS01960 -1.9 -6.9 glycosyltransferase family 2 protein compare
MMJJ_RS03295 -1.9 -11.5 PHP domain-containing protein compare
MMJJ_RS08155 -1.9 -3.9 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07425 -1.9 -10.3 MBL fold metallo-hydrolase compare
MMJJ_RS01880 -1.9 -2.7 RlmE family RNA methyltransferase compare
MMJJ_RS04995 -1.9 -4.1 Tfx family DNA-binding protein compare
MMJJ_RS06250 -1.9 -2.6 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS07980 -1.9 -9.2 biotin synthase BioB compare
MMJJ_RS08340 -1.8 -5.1 archaeoflavoprotein AfpA compare
MMJJ_RS05155 -1.8 -5.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06255 -1.8 -6.0 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS07995 -1.8 -7.6 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS06905 -1.8 -1.9 hypothetical protein compare
MMJJ_RS02040 -1.8 -2.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05295 -1.8 -7.9 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS04670 -1.8 -3.7 DUF2117 domain-containing protein compare
MMJJ_RS08035 -1.8 -6.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS08170 -1.8 -2.4 diaminopimelate decarboxylase compare
MMJJ_RS03170 -1.8 -6.9 DUF5612 domain-containing protein compare
MMJJ_RS07950 -1.8 -3.8 4Fe-4S binding protein compare
MMJJ_RS00450 -1.7 -2.1 DUF126 domain-containing protein compare
MMJJ_RS09175 -1.7 -1.2 anthranilate synthase component I compare
MMJJ_RS06700 -1.7 -3.4 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS07410 -1.7 -3.2 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS02190 -1.7 -13.5 molybdopterin biosynthesis protein compare
MMJJ_RS04790 -1.7 -3.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS07415 -1.7 -2.8 polyprenyl diphosphate synthase compare
MMJJ_RS03110 -1.7 -3.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00355 -1.7 -2.8 ribonuclease P protein component 4 compare
MMJJ_RS03125 -1.7 -4.0 GMC oxidoreductase compare
MMJJ_RS04700 -1.7 -5.3 deoxyhypusine synthase compare
MMJJ_RS03230 -1.7 -3.2 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06260 -1.7 -6.5 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS08535 -1.7 -3.2 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS03615 -1.7 -2.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08250 -1.7 -5.5 hydrogenase maturation peptidase HycI compare
MMJJ_RS06265 -1.6 -10.9 8-amino-7-oxononanoate synthase compare
MMJJ_RS00600 -1.6 -2.8 hydroxymethylbilane synthase compare
MMJJ_RS00645 -1.6 -9.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS08855 -1.6 -4.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS03815 -1.6 -2.0 nascent polypeptide-associated complex protein compare
MMJJ_RS06635 -1.6 -11.1 4Fe-4S binding protein compare
MMJJ_RS05540 -1.6 -12.6 LysR family transcriptional regulator compare
MMJJ_RS00070 -1.6 -3.9 CooT family nickel-binding protein compare
MMJJ_RS03115 -1.6 -7.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS05720 -1.6 -2.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS03965 -1.6 -1.8 DNA-directed RNA polymerase subunit L compare
MMJJ_RS09130 -1.6 -1.5 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS05225 -1.6 -0.9 Gar1/Naf1 family protein compare
MMJJ_RS06600 -1.5 -3.0 DUF555 domain-containing protein compare
MMJJ_RS03005 -1.5 -3.0 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS08810 -1.5 -1.1 DUF4040 domain-containing protein compare
MMJJ_RS01690 -1.5 -3.1 methanogenesis marker 12 protein compare
MMJJ_RS07875 -1.5 -1.8 FAD-dependent oxidoreductase compare
MMJJ_RS07960 -1.5 -2.3 quinolinate synthase NadA compare
MMJJ_RS00210 -1.5 -1.6 DUF530 family protein compare
MMJJ_RS07725 -1.5 -4.4 DNA primase DnaG compare
MMJJ_RS05415 -1.5 -2.1 hypothetical protein compare
MMJJ_RS05195 -1.5 -4.4 hypothetical protein compare
MMJJ_RS06185 -1.5 -4.0 cobalamin biosynthesis protein compare
MMJJ_RS00550 -1.5 -7.7 AIR synthase-related protein compare
MMJJ_RS05710 -1.5 -3.6 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS06930 -1.4 -2.2 type II methionyl aminopeptidase compare
MMJJ_RS05070 -1.4 -1.7 DNA primase catalytic subunit PriS compare
MMJJ_RS04650 -1.4 -4.4 nitrogenase iron protein compare
MMJJ_RS01415 -1.4 -1.7 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS07190 -1.4 -3.8 RtcB family protein compare
MMJJ_RS01345 -1.4 -3.0 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00205 -1.4 -4.1 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS01925 -1.4 -6.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMJJ_RS06220 -1.4 -3.9 polyamine aminopropyltransferase compare
MMJJ_RS02055 -1.4 -9.5 GTP 3',8-cyclase MoaA compare
MMJJ_RS06785 -1.4 -5.9 RNA ligase partner protein compare
MMJJ_RS08000 -1.4 -7.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS01875 -1.4 -3.9 global nitrogen regulator NrpR compare
MMJJ_RS07155 -1.4 -6.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06035 -1.4 -8.4 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS01765 -1.4 -6.8 winged helix-turn-helix domain-containing protein compare
MMJJ_RS00360 -1.4 -2.0 adenosylhomocysteinase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms