Experiment set2IT043 for Ralstonia sp. UNC404CL21Col

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS01450 -7.9 -5.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
ABZR87_RS13250 -7.9 -5.4 phosphoserine phosphatase SerB compare
ABZR87_RS02160 -7.5 -5.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14540 -7.3 -7.1 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02595 -6.6 -11.9 shikimate kinase compare
ABZR87_RS14500 -6.6 -12.6 tryptophan synthase subunit beta compare
ABZR87_RS14535 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02570 -6.5 -20.3 glutamate synthase-related protein compare
ABZR87_RS09465 -6.1 -7.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS16170 -6.0 -7.2 argininosuccinate lyase compare
ABZR87_RS02565 -6.0 -5.9 glutamate synthase subunit beta compare
ABZR87_RS05200 -6.0 -19.9 homoserine O-acetyltransferase compare
ABZR87_RS13790 -6.0 -12.1 chorismate synthase compare
ABZR87_RS02155 -5.9 -9.0 anthranilate phosphoribosyltransferase compare
ABZR87_RS14530 -5.9 -7.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS01810 -5.9 -5.7 glutamate 5-kinase compare
ABZR87_RS22920 -5.9 -4.0 phosphogluconate dehydratase compare
ABZR87_RS14505 -5.8 -6.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS16140 -5.8 -18.9 phosphoenolpyruvate carboxylase compare
ABZR87_RS07360 -5.7 -14.7 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02640 -5.7 -17.4 diaminopimelate decarboxylase compare
ABZR87_RS08630 -5.7 -8.6 dihydroorotase compare
ABZR87_RS09450 -5.7 -10.9 prephenate dehydratase compare
ABZR87_RS09445 -5.7 -16.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02145 -5.6 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS08625 -5.5 -3.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS22970 -5.5 -12.6 cystathionine gamma-synthase family protein compare
ABZR87_RS14950 -5.4 -3.7 acetolactate synthase small subunit compare
ABZR87_RS07380 -5.3 -15.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS01475 -5.2 -11.1 L-arabinose ABC transporter ATP-binding protein AraG conserved
ABZR87_RS00190 -5.2 -12.6 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS01495 -5.2 -13.8 transcriptional regulator GcvA compare
ABZR87_RS00200 -5.1 -6.1 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00210 -5.1 -9.8 nitrite/sulfite reductase compare
ABZR87_RS00835 -5.1 -4.9 argininosuccinate synthase compare
ABZR87_RS01490 -5.0 -5.5 porin conserved
ABZR87_RS04995 -5.0 -4.8 DNA topoisomerase III compare
ABZR87_RS02140 -4.9 -20.2 anthranilate synthase component I compare
ABZR87_RS09935 -4.9 -4.8 amino acid aminotransferase compare
ABZR87_RS02590 -4.8 -11.9 3-dehydroquinate synthase compare
ABZR87_RS04865 -4.8 -5.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS05170 -4.7 -3.2 acetylglutamate kinase compare
ABZR87_RS01485 -4.7 -5.8 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS05100 -4.5 -11.2 RNA polymerase-binding protein DksA compare
ABZR87_RS14490 -4.4 -12.7 tryptophan synthase subunit alpha compare
ABZR87_RS06770 -4.4 -11.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS01110 -4.3 -13.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS01445 -4.2 -15.5 galactonate dehydratase conserved
ABZR87_RS00435 -4.0 -12.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS12790 -4.0 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00185 -3.8 -5.2 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS01470 -3.7 -4.3 L-arabinose ABC transporter permease AraH conserved
ABZR87_RS01465 -3.7 -8.9 SMP-30/gluconolactonase/LRE family protein conserved
ABZR87_RS11440 -3.6 -7.1 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS05590 -3.6 -5.2 orotate phosphoribosyltransferase compare
ABZR87_RS01480 -3.6 -4.5 arabinose ABC transporter substrate-binding protein conserved
ABZR87_RS00205 -3.6 -3.8 DUF934 domain-containing protein compare
ABZR87_RS07665 -3.6 -13.3 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00220 -3.5 -9.0 CysB family HTH-type transcriptional regulator compare
ABZR87_RS14955 -3.4 -4.6 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS12795 -3.3 -9.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS01605 -3.1 -9.2 shikimate dehydrogenase compare
ABZR87_RS09515 -3.1 -3.0 cysteine synthase CysM compare
ABZR87_RS13300 -3.0 -13.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS01645 -2.7 -5.2 type II 3-dehydroquinate dehydratase compare
ABZR87_RS16960 -2.6 -6.0 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS13475 -2.6 -9.1 PAS domain S-box protein compare
ABZR87_RS02480 -2.5 -1.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS00285 -2.5 -2.9 acetylornithine transaminase compare
ABZR87_RS16180 -2.4 -4.0 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS11815 -2.4 -9.3 [protein-PII] uridylyltransferase compare
ABZR87_RS14380 -2.4 -7.8 glutamate racemase compare
ABZR87_RS06645 -2.4 -2.4 TlpA disulfide reductase family protein compare
ABZR87_RS07050 -2.3 -2.5 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08695 -2.3 -12.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS15440 -2.3 -3.5 ribonuclease G compare
ABZR87_RS00195 -2.2 -2.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS04785 -2.1 -9.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS10400 -2.1 -3.9 hypothetical protein compare
ABZR87_RS06495 -2.0 -3.8 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS22915 -2.0 -9.5 glucose-6-phosphate dehydrogenase compare
ABZR87_RS10780 -1.9 -4.8 PD-(D/E)XK nuclease family protein compare
ABZR87_RS07635 -1.9 -2.8 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS01675 -1.9 -2.5 carbohydrate kinase family protein compare
ABZR87_RS16185 -1.9 -3.0 dCTP deaminase compare
ABZR87_RS01225 -1.8 -3.5 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS13175 -1.8 -2.1 tRNA-Leu compare
ABZR87_RS06705 -1.8 -12.1 glutamate--cysteine ligase compare
ABZR87_RS08235 -1.8 -1.8 hypothetical protein compare
ABZR87_RS00875 -1.8 -4.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS10610 -1.7 -1.7 inositol monophosphatase family protein compare
ABZR87_RS10820 -1.7 -8.3 LysR substrate-binding domain-containing protein compare
ABZR87_RS12785 -1.7 -7.3 endopeptidase La compare
ABZR87_RS01455 -1.7 -2.3 SDR family oxidoreductase compare
ABZR87_RS11525 -1.6 -2.7 molybdopterin-binding protein compare
ABZR87_RS07705 -1.6 -4.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS10120 -1.6 -2.0 YceD family protein compare
ABZR87_RS11065 -1.6 -5.6 nitrogen regulation protein NR(II) compare
ABZR87_RS13285 -1.6 -10.8 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS16250 -1.6 -4.2 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS07620 -1.6 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS00215 -1.5 -4.6 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10785 -1.4 -4.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS10170 -1.4 -7.3 RseA family anti-sigma factor compare
ABZR87_RS08645 -1.4 -1.4 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS11015 -1.4 -6.0 amino-acid N-acetyltransferase compare
ABZR87_RS02575 -1.4 -4.4 transposase compare
ABZR87_RS10195 -1.4 -3.8 signal peptidase I compare
ABZR87_RS09460 -1.3 -4.2 prephenate dehydrogenase compare
ABZR87_RS22690 -1.2 -3.0 XRE family transcriptional regulator compare
ABZR87_RS16270 -1.2 -2.6 cold-shock protein compare
ABZR87_RS11245 -1.2 -4.9 translational GTPase TypA compare
ABZR87_RS05025 -1.1 -1.6 rod shape-determining protein MreC compare
ABZR87_RS05015 -1.1 -4.0 penicillin-binding protein 2 compare
ABZR87_RS13705 -1.1 -1.5 integration host factor subunit alpha compare
ABZR87_RS01980 -1.1 -1.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS00020 -1.1 -1.4 DUF3460 family protein compare
ABZR87_RS09635 -1.1 -1.4 ribosome small subunit-dependent GTPase A compare
ABZR87_RS21815 -1.1 -1.1 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS06725 -1.1 -9.1 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS00580 -1.1 -3.0 hypothetical protein compare
ABZR87_RS13290 -1.1 -5.5 3-ketoacyl-ACP reductase compare
ABZR87_RS08700 -1.1 -6.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS11925 -1.0 -6.7 phosphoenolpyruvate synthase compare
ABZR87_RS14115 -1.0 -5.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS10525 -1.0 -1.1 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS03705 -1.0 -1.7 DUF2892 domain-containing protein compare
ABZR87_RS10175 -1.0 -6.0 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS07675 -1.0 -7.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS16125 -1.0 -6.1 heme biosynthesis protein HemY compare
ABZR87_RS16400 -1.0 -2.7 LysR family transcriptional regulator compare
ABZR87_RS04945 -1.0 -3.2 DUF4390 domain-containing protein compare
ABZR87_RS17395 -1.0 -2.1 GNAT family protein compare
ABZR87_RS04975 -1.0 -3.3 peptide deformylase compare
ABZR87_RS07020 -1.0 -7.5 dynamin-like GTPase family protein compare
ABZR87_RS04105 -1.0 -2.7 ATP synthase subunit I compare
ABZR87_RS10620 -0.9 -1.7 serine O-acetyltransferase compare
ABZR87_RS02445 -0.9 -3.8 Sec-independent protein translocase protein TatB compare
ABZR87_RS07625 -0.9 -1.9 Holliday junction branch migration protein RuvA compare
ABZR87_RS10070 -0.9 -2.4 gephyrin-like molybdotransferase Glp compare
ABZR87_RS06710 -0.9 -7.4 glutathione synthase compare
ABZR87_RS13645 -0.9 -1.1 hypothetical protein compare
ABZR87_RS01245 -0.9 -3.2 Dps family protein compare
ABZR87_RS06715 -0.9 -2.6 PTS sugar transporter subunit IIA compare
ABZR87_RS02150 -0.9 -2.4 lysozyme inhibitor LprI family protein compare
ABZR87_RS23095 -0.9 -1.1 MarR family transcriptional regulator compare
ABZR87_RS14375 -0.9 -2.1 fumarate hydratase compare
ABZR87_RS13415 -0.9 -3.8 IclR family transcriptional regulator compare
ABZR87_RS11195 -0.9 -5.0 pseudouridine synthase compare
ABZR87_RS12800 -0.9 -3.2 trigger factor compare
ABZR87_RS15225 -0.8 -3.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS18165 -0.8 -1.8 hypothetical protein compare
ABZR87_RS05205 -0.8 -3.5 methionine biosynthesis protein MetW compare
ABZR87_RS03780 -0.8 -1.4 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS07470 -0.8 -3.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS16165 -0.8 -0.9 anti-sigma factor compare
ABZR87_RS14235 -0.8 -5.0 formyltetrahydrofolate deformylase compare
ABZR87_RS05060 -0.8 -2.2 DUF484 family protein compare
ABZR87_RS01615 -0.8 -1.6 RNB domain-containing ribonuclease compare
ABZR87_RS02440 -0.8 -5.8 twin-arginine translocase subunit TatC compare
ABZR87_RS06405 -0.8 -1.3 hypothetical protein compare
ABZR87_RS16735 -0.8 -6.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS04940 -0.8 -4.5 PAS domain-containing sensor histidine kinase compare
ABZR87_RS07760 -0.8 -1.3 HlyC/CorC family transporter compare
ABZR87_RS07035 -0.8 -4.2 RNase adapter RapZ compare
ABZR87_RS11070 -0.7 -4.7 nitrogen regulation protein NR(I) compare
ABZR87_RS11625 -0.7 -4.6 malate synthase A compare
ABZR87_RS08640 -0.7 -3.6 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS16055 -0.7 -4.5 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS06250 -0.7 -3.3 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS12295 -0.7 -1.9 muconate/chloromuconate family cycloisomerase compare
ABZR87_RS22340 -0.7 -1.5 hypothetical protein compare
ABZR87_RS08580 -0.7 -3.6 response regulator compare
ABZR87_RS16130 -0.7 -2.8 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS00970 -0.7 -1.4 molecular chaperone DnaJ compare
ABZR87_RS02385 -0.7 -3.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS21700 -0.7 -1.2 hypothetical protein compare
ABZR87_RS01510 -0.7 -1.3 YidB family protein compare
ABZR87_RS09440 -0.7 -4.1 DUF2059 domain-containing protein compare
ABZR87_RS10240 -0.7 -1.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS09820 -0.7 -1.7 RidA family protein compare
ABZR87_RS00830 -0.7 -1.6 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS11125 -0.7 -3.0 cell division protein ZapE compare
ABZR87_RS11970 -0.7 -1.7 hypothetical protein compare
ABZR87_RS14415 -0.7 -1.0 hemin uptake protein HemP compare
ABZR87_RS05580 -0.7 -2.1 diaminopimelate epimerase compare
ABZR87_RS01800 -0.7 -2.8 RNA pyrophosphohydrolase compare
ABZR87_RS00795 -0.7 -2.2 site-specific tyrosine recombinase XerD compare
ABZR87_RS12260 -0.7 -2.2 (2Fe-2S)-binding protein compare
ABZR87_RS05065 -0.7 -2.2 tyrosine recombinase XerC compare
ABZR87_RS09625 -0.7 -5.0 CobD/CbiB family protein compare
ABZR87_RS14495 -0.7 -2.7 site-specific DNA-methyltransferase compare
ABZR87_RS05350 -0.7 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS06145 -0.7 -3.4 XRE family transcriptional regulator compare
ABZR87_RS23470 -0.6 -0.8 malonate decarboxylase holo-ACP synthase compare
ABZR87_RS04125 -0.6 -2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS17760 -0.6 -1.0 ATP-binding cassette domain-containing protein compare
ABZR87_RS10085 -0.6 -0.8 Rne/Rng family ribonuclease compare
ABZR87_RS08985 -0.6 -4.4 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS01430 -0.6 -5.4 LysR family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Galactose in Ralstonia sp. UNC404CL21Col

For carbon source D-Galactose across organisms