Experiment set2IT042 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Aluminum chloride hydrate 4 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -5.0 -1.5 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3264 -4.7 -3.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4579 -4.6 -3.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4678 -4.3 -1.2 hypothetical protein compare
Pf6N2E2_2729 -4.3 -17.9 membrane protein, putative conserved
Pf6N2E2_3663 -4.2 -7.6 Glycosyl transferase compare
Pf6N2E2_5609 -4.2 -8.5 DNA-binding response regulator ColR compare
Pf6N2E2_3282 -3.8 -3.7 FIG005080: Possible exported protein compare
Pf6N2E2_2129 -3.8 -4.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3941 -3.8 -4.6 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_754 -3.7 -2.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5605 -3.6 -3.1 FxsA protein compare
Pf6N2E2_4162 -3.6 -3.1 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2674 -3.6 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_5527 -3.6 -3.5 Cold shock protein CspC compare
Pf6N2E2_4187 -3.6 -5.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2217 -3.5 -7.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5610 -3.5 -9.6 two-component system sensor protein compare
Pf6N2E2_4077 -3.5 -2.7 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2574 -3.4 -3.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_3930 -3.2 -10.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_2825 -3.2 -4.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_146 -2.9 -2.0 Transcriptional regulator, MarR family compare
Pf6N2E2_1870 -2.9 -2.1 hypothetical protein compare
Pf6N2E2_2756 -2.8 -7.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4072 -2.8 -6.4 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1705 -2.7 -1.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2580 -2.7 -3.5 Flagellar biosynthesis protein FliP compare
Pf6N2E2_3661 -2.6 -5.7 hypothetical protein compare
Pf6N2E2_178 -2.5 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3062 -2.4 -3.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2025 -2.3 -5.2 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_2824 -2.3 -8.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4075 -2.3 -3.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5771 -2.3 -6.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5430 -2.3 -6.6 Transglycosylase, Slt family compare
Pf6N2E2_3060 -2.2 -2.1 Outer membrane protein H precursor compare
Pf6N2E2_5780 -2.2 -7.5 Periplasmic protease compare
Pf6N2E2_1087 -2.2 -9.6 Iron siderophore sensor protein compare
Pf6N2E2_4416 -2.2 -2.5 Tyrosine recombinase XerC compare
Pf6N2E2_5261 -2.2 -1.2 FIG00956983: hypothetical protein compare
Pf6N2E2_3659 -2.2 -5.2 Protein fixF compare
Pf6N2E2_5704 -2.2 -3.5 Transcriptional regulatory protein PhoP compare
Pf6N2E2_2218 -2.2 -4.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2753 -2.1 -2.8 HtrA protease/chaperone protein compare
Pf6N2E2_2985 -2.1 -2.3 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_4071 -2.1 -4.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_525 -2.1 -4.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2018 -2.1 -3.0 hypothetical protein compare
Pf6N2E2_4074 -2.0 -8.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_1288 -2.0 -2.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_4372 -2.0 -4.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3664 -1.9 -6.3 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2823 -1.9 -4.6 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_16 -1.9 -1.5 hypothetical protein compare
Pf6N2E2_3432 -1.9 -3.2 Ais protein, putative compare
Pf6N2E2_4773 -1.8 -1.1 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5133 -1.8 -2.3 FIG00953980: hypothetical protein compare
Pf6N2E2_755 -1.8 -7.8 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide conserved
Pf6N2E2_2795 -1.7 -1.8 putative exported protein compare
Pf6N2E2_2219 -1.7 -2.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_760 -1.7 -8.7 Na+/H+ antiporter NhaB compare
Pf6N2E2_2508 -1.7 -3.5 hypothetical protein compare
Pf6N2E2_144 -1.7 -10.4 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4448 -1.7 -2.4 probable P23 protein compare
Pf6N2E2_5567 -1.7 -1.9 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_4611 -1.7 -3.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3349 -1.6 -3.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_919 -1.6 -1.6 FIG00954373: hypothetical protein compare
Pf6N2E2_648 -1.6 -2.0 General secretion pathway protein K compare
Pf6N2E2_3144 -1.6 -7.5 Thiol:disulfide interchange protein DsbC conserved
Pf6N2E2_5727 -1.6 -4.7 FIG00955360: hypothetical protein compare
Pf6N2E2_5508 -1.6 -2.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3373 -1.6 -1.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2474 -1.6 -5.3 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_3027 -1.6 -1.3 Baseplate assembly protein V compare
Pf6N2E2_2938 -1.6 -2.8 Outer membrane lipoprotein compare
Pf6N2E2_1056 -1.6 -0.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4886 -1.6 -6.7 Catalase (EC 1.11.1.6) compare
Pf6N2E2_4052 -1.6 -1.4 FIG00955481: hypothetical protein compare
Pf6N2E2_3607 -1.5 -5.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_6045 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_4369 -1.5 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1179 -1.5 -3.4 hypothetical protein compare
Pf6N2E2_3261 -1.5 -1.8 hypothetical protein compare
Pf6N2E2_5155 -1.5 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4206 -1.5 -1.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5006 -1.5 -4.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_952 -1.5 -2.4 putative exported protein compare
Pf6N2E2_3829 -1.4 -2.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1932 -1.4 -3.7 Transcriptional regulator, IclR family compare
Pf6N2E2_4453 -1.4 -8.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_241 -1.4 -1.1 hypothetical protein compare
Pf6N2E2_5902 -1.4 -2.4 hypothetical protein compare
Pf6N2E2_2811 -1.4 -5.1 FIG00956006: hypothetical protein compare
Pf6N2E2_4300 -1.4 -1.4 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_5646 -1.4 -1.1 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3270 -1.4 -4.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3033 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_5172 -1.3 -2.0 FOG: TPR repeat compare
Pf6N2E2_4659 -1.3 -3.2 Lipoprotein, putative compare
Pf6N2E2_4113 -1.3 -1.8 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_2864 -1.3 -1.3 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_888 -1.3 -2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2550 -1.3 -7.8 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily conserved
Pf6N2E2_3460 -1.3 -1.2 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5633 -1.3 -8.1 Aromatic amino acid transport protein AroP compare
Pf6N2E2_145 -1.3 -3.3 putative exported protein compare
Pf6N2E2_2912 -1.3 -1.2 FIG00954094: hypothetical protein compare
Pf6N2E2_5327 -1.3 -3.5 Outer membrane protein assembly factor YaeT precursor compare
Pf6N2E2_1433 -1.3 -2.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_3597 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_1140 -1.3 -2.0 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_413 -1.2 -1.9 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_3969 -1.2 -1.0 Membrane-fusion protein compare
Pf6N2E2_2258 -1.2 -4.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_58 -1.2 -1.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_5571 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_504 -1.2 -1.3 DNA-binding response regulator compare
Pf6N2E2_1694 -1.2 -0.9 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1085 -1.2 -2.5 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_2746 -1.2 -3.0 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_3096 -1.2 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2325 -1.2 -3.1 Recombination protein RecR compare
Pf6N2E2_5728 -1.2 -2.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5001 -1.2 -1.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3095 -1.2 -0.9 hypothetical protein compare
Pf6N2E2_238 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_2510 -1.2 -2.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3300 -1.2 -1.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1136 -1.2 -1.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2470 -1.2 -4.8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_2506 -1.1 -7.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_89 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_5617 -1.1 -4.6 Iron-regulated protein A precursor compare
Pf6N2E2_2022 -1.1 -3.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3782 -1.1 -2.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2625 -1.1 -2.3 Flagellar P-ring protein FlgI compare
Pf6N2E2_2013 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_4451 -1.1 -4.0 FIG139438: lipoprotein B compare
Pf6N2E2_1747 -1.1 -2.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3714 -1.1 -3.3 FIG017861: hypothetical protein compare
Pf6N2E2_2367 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_5618 -1.1 -5.8 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf6N2E2_5088 -1.1 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_828 -1.1 -3.1 Transcriptional regulator, TetR family compare
Pf6N2E2_2488 -1.1 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4417 -1.1 -2.3 Protein of unknown function DUF484 compare
Pf6N2E2_5821 -1.1 -4.5 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf6N2E2_3642 -1.1 -2.4 lipoprotein, putative compare
Pf6N2E2_55 -1.1 -1.5 Probable hydrolase compare
Pf6N2E2_1171 -1.0 -2.2 LysR family transcriptional regulator PA2877 compare
Pf6N2E2_5956 -1.0 -3.5 FIG004453: protein YceG like compare
Pf6N2E2_3171 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_5435 -1.0 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3204 -1.0 -2.0 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_86 -1.0 -4.1 FIG022160: hypothetical toxin compare
Pf6N2E2_2143 -1.0 -1.8 Uncharacterized GST-like protein yncG compare
Pf6N2E2_4999 -1.0 -2.5 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_5936 -1.0 -1.5 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_3885 -1.0 -2.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4620 -1.0 -2.8 Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25) compare
Pf6N2E2_3942 -1.0 -4.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_309 -1.0 -0.8 FIG00957702: hypothetical protein compare
Pf6N2E2_2471 -1.0 -4.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1886 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_156 -1.0 -1.1 Carbon storage regulator compare
Pf6N2E2_5943 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_638 -1.0 -1.6 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_136 -1.0 -1.7 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_663 -0.9 -2.0 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_3588 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_2934 -0.9 -1.2 lipoprotein, putative compare
Pf6N2E2_2279 -0.9 -1.4 FIG00954981: hypothetical protein compare
Pf6N2E2_2591 -0.9 -2.5 Flagellar assembly protein FliH compare
Pf6N2E2_3835 -0.9 -2.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_555 -0.9 -2.8 Uncharacterized protein ImpB compare
Pf6N2E2_5689 -0.9 -1.6 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_5898 -0.9 -1.6 Integral membrane protein compare
Pf6N2E2_5720 -0.9 -3.9 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_282 -0.9 -1.1 GNAT family acetyltransferase YjcF compare
Pf6N2E2_2200 -0.9 -0.7 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_2901 -0.9 -1.6 Iron siderophore sensor protein compare
Pf6N2E2_5017 -0.9 -2.8 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf6N2E2_2425 -0.9 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3505 -0.9 -0.9 Translation initiation factor SUI1-related protein compare
Pf6N2E2_417 -0.9 -2.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2125 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_3201 -0.9 -3.1 Transcriptional regulator, MerR family compare
Pf6N2E2_4150 -0.9 -1.5 probable exported protein YPO0432 compare
Pf6N2E2_1464 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_423 -0.9 -1.1 Putative phosphatase YfbT compare
Pf6N2E2_4599 -0.9 -1.5 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5375 -0.9 -1.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3899 -0.9 -4.3 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_1546 -0.9 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_1958 -0.8 -1.9 Predicted dinucleotide-binding enzymes compare
Pf6N2E2_665 -0.8 -1.5 Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) compare
Pf6N2E2_1471 -0.8 -2.8 Dienelactone hydrolase and related enzymes compare
Pf6N2E2_1299 -0.8 -1.5 Transcriptional regulator, TetR family compare


Specific Phenotypes

For 10 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Aluminum chloride hydrate across organisms