Experiment set2IT042 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Aluminum chloride hydrate 4 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_6057 +2.7 7.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4153 +2.7 4.8 Sensory box histidine kinase compare
Pf6N2E2_5156 +2.4 5.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2261 +2.3 14.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_3260 +2.1 9.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5739 +2.1 2.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_6058 +2.1 7.9 FIG139976: hypothetical protein compare
Pf6N2E2_3257 +2.1 9.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3258 +1.9 10.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5181 +1.9 14.2 Paraquat-inducible protein A compare
Pf6N2E2_3667 +1.7 2.5 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5183 +1.7 12.7 Paraquat-inducible protein B compare
Pf6N2E2_2869 +1.6 1.5 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2487 +1.6 2.1 FIG00956090: hypothetical protein compare
Pf6N2E2_5182 +1.6 9.5 Paraquat-inducible protein A compare
Pf6N2E2_5103 +1.5 2.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2646 +1.5 2.3 FIG00953416: hypothetical protein compare
Pf6N2E2_4612 +1.5 6.9 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5520 +1.4 7.0 Sensory box histidine kinase compare
Pf6N2E2_4624 +1.4 1.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4761 +1.4 9.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2375 +1.4 4.4 Response regulator NasT compare
Pf6N2E2_5794 +1.3 2.4 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5705 +1.3 1.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3763 +1.3 2.3 hypothetical protein compare
Pf6N2E2_3284 +1.3 5.3 Septum formation protein Maf compare
Pf6N2E2_4464 +1.3 3.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_5679 +1.3 5.8 hypothetical protein compare
Pf6N2E2_2794 +1.2 1.4 putative membrane protein compare
Pf6N2E2_4759 +1.2 9.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5425 +1.2 1.6 hypothetical protein compare
Pf6N2E2_2352 +1.2 2.1 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_3537 +1.2 3.6 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_4045 +1.2 3.9 FIG00953248: hypothetical protein compare
Pf6N2E2_476 +1.2 4.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2969 +1.2 8.1 Peptide chain release factor RF-3 conserved
Pf6N2E2_1032 +1.2 1.4 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3908 +1.2 7.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4459 +1.2 2.6 Transcriptional regulator, GntR family compare
Pf6N2E2_204 +1.2 1.6 hypothetical protein compare
Pf6N2E2_4763 +1.2 6.9 Biotin synthesis protein BioC compare
Pf6N2E2_2447 +1.2 3.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2313 +1.2 2.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4631 +1.2 8.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_82 +1.2 2.5 hypothetical protein compare
Pf6N2E2_5555 +1.2 1.0 Cold shock protein CspA compare
Pf6N2E2_3762 +1.2 6.7 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_827 +1.1 2.3 probable dioxygenase compare
Pf6N2E2_4159 +1.1 3.4 Cytochrome c4 compare
Pf6N2E2_127 +1.1 2.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5157 +1.1 6.7 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_1396 +1.1 1.7 ABC transporter, ATP-binding protein compare
Pf6N2E2_3612 +1.1 1.7 HflK protein compare
Pf6N2E2_3477 +1.1 1.7 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2438 +1.1 1.7 hypothetical protein compare
Pf6N2E2_1656 +1.1 1.9 hypothetical protein compare
Pf6N2E2_5545 +1.1 3.5 Queuosine Biosynthesis QueE Radical SAM compare
Pf6N2E2_4534 +1.1 3.3 hypothetical protein compare
Pf6N2E2_3199 +1.1 4.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_3533 +1.1 4.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_5742 +1.0 4.6 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_3206 +1.0 1.8 hypothetical protein compare
Pf6N2E2_942 +1.0 1.5 Mll6465 protein compare
Pf6N2E2_4615 +1.0 1.1 type IV pili signal transduction protein PilI compare
Pf6N2E2_2384 +1.0 3.7 CmpX compare
Pf6N2E2_5554 +1.0 4.2 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_4803 +1.0 1.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2477 +1.0 1.6 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_5174 +1.0 3.1 Glycosyltransferase compare
Pf6N2E2_2060 +1.0 6.1 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3535 +1.0 4.0 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_4422 +1.0 2.1 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_4148 +1.0 4.9 Glutamate-aspartate carrier protein compare
Pf6N2E2_2642 +1.0 5.3 putative patatin-like phospholipase compare
Pf6N2E2_652 +1.0 3.5 General secretion pathway protein E compare
Pf6N2E2_1371 +0.9 2.7 hypothetical protein compare
Pf6N2E2_687 +0.9 1.6 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_338 +0.9 0.9 Transcriptional regulator, AraC family compare
Pf6N2E2_5452 +0.9 1.5 hypothetical protein compare
Pf6N2E2_2605 +0.9 4.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5049 +0.9 0.9 acetyltransferase, GNAT family compare
Pf6N2E2_672 +0.9 1.5 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_5869 +0.9 2.0 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_6059 +0.9 2.8 FIG008443: hypothetical protein compare
Pf6N2E2_1248 +0.9 1.8 MutT/nudix family protein compare
Pf6N2E2_5494 +0.9 2.6 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5086 +0.9 1.2 hypothetical protein compare
Pf6N2E2_2413 +0.9 0.7 FIG074102: hypothetical protein compare
Pf6N2E2_3531 +0.9 3.6 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4762 +0.9 2.0 Biotin synthesis protein BioH compare
Pf6N2E2_1617 +0.9 1.0 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4751 +0.9 3.0 response regulator compare
Pf6N2E2_2792 +0.9 3.2 Antitoxin 1 compare
Pf6N2E2_5746 +0.9 1.6 Cobalamin synthase compare
Pf6N2E2_2755 +0.9 1.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5745 +0.9 4.2 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_482 +0.9 1.9 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_4764 +0.9 3.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_1034 +0.9 1.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2518 +0.8 1.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_37 +0.8 2.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3698 +0.8 2.4 Nicotinamidase family protein YcaC compare
Pf6N2E2_5741 +0.8 4.7 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_4397 +0.8 2.6 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_4708 +0.8 2.2 hypothetical protein compare
Pf6N2E2_2519 +0.8 1.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_2065 +0.8 2.1 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_4996 +0.8 2.5 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_3122 +0.8 1.3 Chemotaxis signal transduction protein compare
Pf6N2E2_5743 +0.8 3.4 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_987 +0.8 2.0 hypothetical protein compare
Pf6N2E2_2724 +0.8 2.4 Nitroreductase family protein compare
Pf6N2E2_2850 +0.8 2.4 Transporter, LysE family compare
Pf6N2E2_3362 +0.8 2.9 hypothetical protein compare
Pf6N2E2_1534 +0.8 1.0 Probable transmembrane protein compare
Pf6N2E2_5160 +0.8 1.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_98 +0.8 0.9 putative transmembrane protein compare
Pf6N2E2_3328 +0.8 1.9 transcriptional regulator compare
Pf6N2E2_2264 +0.8 2.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4548 +0.8 1.8 hypothetical protein compare
Pf6N2E2_3021 +0.8 1.0 hypothetical protein compare
Pf6N2E2_3285 +0.8 3.1 Rod shape-determining protein MreD compare
Pf6N2E2_1040 +0.8 0.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1102 +0.8 2.9 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf6N2E2_3134 +0.8 0.8 hypothetical protein compare
Pf6N2E2_733 +0.8 1.5 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_4494 +0.8 2.7 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_5714 +0.8 1.2 Flavoprotein WrbA compare
Pf6N2E2_4171 +0.8 2.7 hypothetical protein compare
Pf6N2E2_1435 +0.8 1.4 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1839 +0.8 2.2 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_3687 +0.8 2.3 FIG00959437: hypothetical protein compare
Pf6N2E2_5158 +0.8 2.3 FIG00954153: hypothetical protein compare
Pf6N2E2_2161 +0.8 1.8 Conserved domain protein compare
Pf6N2E2_5738 +0.8 4.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_2247 +0.7 2.3 Transcriptional regulator, AraC family compare
Pf6N2E2_3240 +0.7 1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_2967 +0.7 1.2 Cold shock protein CspA compare
Pf6N2E2_5524 +0.7 5.3 Outer membrane porin, OprD family compare
Pf6N2E2_2310 +0.7 4.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1968 +0.7 1.8 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_3014 +0.7 1.4 P2-like prophage tail protein X compare
Pf6N2E2_3847 +0.7 2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_4084 +0.7 2.6 Transcriptional regulator compare
Pf6N2E2_384 +0.7 0.8 Glycine cleavage system transcriptional activator compare
Pf6N2E2_288 +0.7 1.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5496 +0.7 1.7 FIG00953991: hypothetical protein compare
Pf6N2E2_3553 +0.7 3.3 Urease (EC 3.5.1.5) (from data) compare
Pf6N2E2_5546 +0.7 2.8 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_2176 +0.7 1.3 Amidases related to nicotinamidase compare
Pf6N2E2_1462 +0.7 1.9 Nicotinamidase/isochorismatase family protein compare
Pf6N2E2_4990 +0.7 2.0 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_342 +0.7 1.0 DNA-binding response regulator compare
Pf6N2E2_1983 +0.7 2.0 hypothetical protein compare
Pf6N2E2_1165 +0.7 1.8 hypothetical protein compare
Pf6N2E2_3183 +0.7 1.7 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_613 +0.7 1.0 lipoprotein, putative compare
Pf6N2E2_1797 +0.7 1.0 Transcriptional regulator compare
Pf6N2E2_5023 +0.7 3.2 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Pf6N2E2_3532 +0.7 3.8 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_3901 +0.7 2.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_4165 +0.7 2.4 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_3088 +0.7 1.6 hypothetical protein compare
Pf6N2E2_1325 +0.7 1.9 FIG00954773: hypothetical protein compare
Pf6N2E2_1095 +0.7 0.9 Opine oxidase subunit C compare
Pf6N2E2_2285 +0.7 0.9 FIG00954079: hypothetical protein compare
Pf6N2E2_1893 +0.7 2.0 hypothetical protein compare
Pf6N2E2_3198 +0.7 1.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2754 +0.7 1.9 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_5241 +0.7 1.7 Aminopeptidase N compare
Pf6N2E2_3738 +0.7 2.0 General secretion pathway protein L compare
Pf6N2E2_114 +0.7 1.8 Polysaccharide biosynthesis protein compare
Pf6N2E2_4897 +0.7 2.2 hypothetical protein compare
Pf6N2E2_6075 +0.7 2.1 Chromosome segregation ATPases compare
Pf6N2E2_1754 +0.7 1.8 FIG00731982: hypothetical protein compare
Pf6N2E2_2606 +0.7 2.9 hypothetical protein compare
Pf6N2E2_383 +0.7 2.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2139 +0.7 2.1 Paraquat-inducible protein A compare
Pf6N2E2_3429 +0.7 2.0 hypothetical protein compare
Pf6N2E2_1502 +0.7 1.3 Two-component system regulatory protein compare
Pf6N2E2_3443 +0.7 1.8 Sulfate permease compare
Pf6N2E2_4427 +0.7 1.6 FIG00954215: hypothetical protein compare
Pf6N2E2_1022 +0.7 1.5 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_5178 +0.7 1.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2887 +0.7 1.4 Aldose 1-epimerase compare
Pf6N2E2_375 +0.7 2.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3162 +0.7 1.5 hypothetical protein compare
Pf6N2E2_4969 +0.7 0.9 hypothetical protein compare
Pf6N2E2_5522 +0.7 1.6 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_2822 +0.7 3.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_344 +0.7 1.4 hypothetical protein compare
Pf6N2E2_5944 +0.7 3.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_546 +0.7 1.1 FIG00966904: hypothetical protein compare
Pf6N2E2_6050 +0.6 2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4632 +0.6 4.7 Amine oxidase [flavin-containing] (EC 1.4.3.4) compare
Pf6N2E2_2267 +0.6 2.0 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_1343 +0.6 1.9 Transcriptional regulator compare
Pf6N2E2_5030 +0.6 2.7 Transcriptional regulator, AsnC family compare
Pf6N2E2_869 +0.6 1.5 FMN oxidoreductase compare
Pf6N2E2_3611 +0.6 0.8 HflC protein compare


Specific Phenotypes

For 10 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Aluminum chloride hydrate across organisms