Experiment set2IT042 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Aspartic Acid carbon source

200 most important genes:

  gene name fitness t score description  
AO353_12090 -3.4 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07230 -3.3 -11.8 anthranilate synthase compare
AO353_13070 -3.2 -6.8 phosphoserine phosphatase compare
AO353_09950 -3.2 -4.3 aspartate ammonia-lyase compare
AO353_05625 -3.1 -2.1 transcription elongation factor GreA compare
AO353_05115 -3.1 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_07210 -3.1 -4.2 indole-3-glycerol-phosphate synthase compare
AO353_08185 -3.1 -7.2 methionine biosynthesis protein MetW compare
AO353_12085 -3.1 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12070 -3.0 -6.1 imidazoleglycerol-phosphate dehydratase compare
AO353_02075 -3.0 -8.1 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_20625 -3.0 -3.5 3-isopropylmalate dehydratase compare
AO353_09945 -2.9 -4.0 LysR family transcriptional regulator compare
AO353_12365 -2.9 -4.0 phosphoribosyl-AMP cyclohydrolase compare
AO353_14400 -2.9 -2.0 Fis family transcriptional regulator compare
AO353_20665 -2.9 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07220 -2.8 -6.8 anthranilate synthase compare
AO353_08685 -2.8 -6.9 N-acetylglutamate synthase compare
AO353_20635 -2.7 -9.5 3-isopropylmalate dehydrogenase compare
AO353_16280 -2.7 -6.5 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 1 (from data) compare
AO353_14505 -2.7 -10.0 ketol-acid reductoisomerase compare
AO353_05110 -2.7 -8.7 histidinol dehydrogenase compare
AO353_02250 -2.7 -3.1 chorismate synthase compare
AO353_08180 -2.6 -10.5 homoserine O-acetyltransferase compare
AO353_07155 -2.6 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_16265 -2.6 -5.1 Fis family transcriptional regulator compare
AO353_16290 -2.5 -9.4 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) compare
AO353_09240 -2.5 -1.7 acetylglutamate kinase compare
AO353_07215 -2.5 -5.9 anthranilate phosphoribosyltransferase compare
AO353_08345 -2.4 -6.9 dihydroxy-acid dehydratase compare
AO353_04155 -2.4 -9.5 ornithine carbamoyltransferase compare
AO353_12075 -2.4 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_16270 -2.4 -12.8 histidine kinase compare
AO353_20620 -2.3 -5.7 isopropylmalate isomerase compare
AO353_15925 -2.3 -10.6 2-isopropylmalate synthase compare
AO353_16285 -2.3 -7.2 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 (from data) conserved
AO353_08475 -2.3 -7.5 phosphoserine phosphatase compare
AO353_14500 -2.3 -5.0 acetolactate synthase 3 regulatory subunit compare
AO353_24425 -2.2 -3.6 amino acid ABC transporter permease compare
AO353_14495 -2.2 -7.9 acetolactate synthase 3 catalytic subunit compare
AO353_04105 -2.2 -6.0 argininosuccinate synthase compare
AO353_20695 -2.2 -5.1 O-succinylhomoserine sulfhydrylase compare
AO353_10670 -2.2 -6.2 shikimate dehydrogenase compare
AO353_00430 -2.1 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_09000 -2.1 -3.8 argininosuccinate lyase compare
AO353_12360 -2.1 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_14370 -2.1 -5.1 glucose-6-phosphate isomerase compare
AO353_24130 -2.1 -3.0 hypothetical protein compare
AO353_20175 -2.1 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_05800 -2.0 -4.6 hypothetical protein compare
AO353_03580 -2.0 -3.0 ATP-dependent DNA helicase RuvB compare
AO353_10710 -2.0 -3.8 tryptophan synthase subunit beta compare
AO353_13165 -2.0 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_02070 -2.0 -5.8 prephenate dehydratase compare
AO353_08015 -2.0 -5.3 5,10-methylenetetrahydrofolate reductase compare
AO353_20540 -1.9 -6.4 aromatic amino acid aminotransferase compare
AO353_06495 -1.8 -4.5 gamma-glutamyl phosphate reductase compare
AO353_19060 -1.8 -4.3 CysB family transcriptional regulator compare
AO353_14930 -1.8 -3.2 GntR family transcriptional regulator compare
AO353_05080 -1.8 -8.3 sulfate adenylyltransferase compare
AO353_04240 -1.8 -2.0 chemotaxis protein CheW compare
AO353_02300 -1.7 -2.6 MarR family transcriptional regulator compare
AO353_14115 -1.7 -5.0 gamma-glutamyl kinase compare
AO353_15410 -1.7 -1.9 hypothetical protein compare
AO353_08165 -1.7 -2.5 pyrroline-5-carboxylate reductase compare
AO353_08510 -1.6 -4.1 3-phosphoglycerate dehydrogenase compare
AO353_01975 -1.5 -5.9 glycosyl transferase compare
AO353_26285 -1.5 -1.7 hypothetical protein compare
AO353_19360 -1.5 -2.4 peroxiredoxin compare
AO353_26195 -1.5 -2.2 hypothetical protein compare
AO353_03590 -1.5 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_10705 -1.5 -3.0 tryptophan synthase subunit alpha compare
AO353_11775 -1.5 -5.2 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_10950 -1.5 -7.3 thiol:disulfide interchange protein compare
AO353_11165 -1.5 -6.9 hypothetical protein compare
AO353_26530 -1.5 -4.8 hypothetical protein compare
AO353_22800 -1.5 -2.5 sulfite reductase compare
AO353_10445 -1.4 -1.4 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_15250 -1.4 -2.7 cytochrome B compare
AO353_04220 -1.4 -4.5 chemotaxis protein CheY compare
AO353_05075 -1.4 -6.5 adenylylsulfate kinase compare
AO353_00610 -1.3 -2.0 cytochrome C oxidase Cbb3 compare
AO353_18540 -1.3 -2.1 pseudouridine synthase compare
AO353_21455 -1.3 -1.9 cation:proton antiporter compare
AO353_20585 -1.3 -2.9 TetR family transcriptional regulator compare
AO353_08780 -1.3 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_05010 -1.3 -1.7 HopJ type III effector protein compare
AO353_12460 -1.3 -5.3 malate dehydrogenase compare
AO353_18715 -1.3 -1.6 histidine kinase compare
AO353_24625 -1.3 -3.0 hypothetical protein compare
AO353_00825 -1.3 -2.5 porin compare
AO353_06795 -1.2 -2.0 Isochorismatase compare
AO353_01080 -1.2 -5.8 hypothetical protein compare
AO353_08980 -1.2 -2.0 heme biosynthesis operon protein HemX compare
AO353_27685 -1.2 -3.6 cold-shock protein compare
AO353_13925 -1.2 -1.4 XRE family transcriptional regulator compare
AO353_03670 -1.2 -3.4 ornithine acetyltransferase compare
AO353_11720 -1.2 -2.6 taurine transporter ATP-binding subunit compare
AO353_12500 -1.2 -1.4 shikimate kinase compare
AO353_04355 -1.2 -1.5 homoserine dehydrogenase compare
AO353_19310 -1.2 -1.4 enoyl-CoA hydratase compare
AO353_13155 -1.2 -2.6 hypothetical protein compare
AO353_12240 -1.2 -3.2 histidine utilization repressor compare
AO353_03615 -1.2 -1.9 cold-shock protein compare
AO353_15905 -1.1 -3.9 outer membrane protein assembly factor BamB compare
AO353_06540 -1.1 -1.8 hypothetical protein compare
AO353_21520 -1.1 -2.5 hypothetical protein compare
AO353_02685 -1.1 -2.5 phosphoribosylglycinamide formyltransferase compare
AO353_05420 -1.1 -1.3 peptide chain release factor 3 compare
AO353_06045 -1.1 -3.9 exodeoxyribonuclease V subunit beta compare
AO353_17165 -1.1 -2.2 ATP-dependent helicase compare
AO353_14220 -1.1 -1.2 ribosomal large subunit pseudouridine synthase D compare
AO353_25845 -1.1 -2.1 GNAT family acetyltransferase compare
AO353_07325 -1.1 -1.7 diadenosine tetraphosphatase compare
AO353_07250 -1.1 -1.7 polyamine ABC transporter permease compare
AO353_10455 -1.1 -1.2 tRNA modification GTPase MnmE compare
AO353_03020 -1.0 -4.3 arginine N-succinyltransferase compare
AO353_27650 -1.0 -2.9 cell division protein FtsK compare
AO353_16645 -1.0 -2.6 hypothetical protein compare
AO353_08440 -1.0 -2.4 hypothetical protein compare
AO353_06750 -1.0 -2.7 methionine ABC transporter ATP-binding protein compare
AO353_16040 -1.0 -1.7 hypothetical protein compare
AO353_01725 -1.0 -2.0 phosphohistidine phosphatase compare
AO353_09560 -1.0 -0.7 type VI secretion protein compare
AO353_01685 -1.0 -1.5 hypothetical protein compare
AO353_14405 -1.0 -6.3 ATPase compare
AO353_09040 -1.0 -1.3 diaminopimelate epimerase compare
AO353_06040 -1.0 -1.9 exodeoxyribonuclease V subunit alpha compare
AO353_20185 -1.0 -3.7 DNA-binding protein compare
AO353_13140 -1.0 -3.0 tRNA dimethylallyltransferase compare
AO353_11530 -1.0 -4.6 diguanylate cyclase compare
AO353_26090 -1.0 -1.7 hypothetical protein compare
AO353_29365 -1.0 -1.9 paraquat-inducible protein A compare
AO353_23140 -0.9 -1.8 aspartate dehydrogenase compare
AO353_08645 -0.9 -1.7 transporter compare
AO353_10320 -0.9 -1.4 hypothetical protein compare
AO353_17450 -0.9 -3.0 hypothetical protein compare
AO353_09045 -0.9 -1.6 hypothetical protein compare
AO353_12115 -0.9 -1.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12940 -0.9 -3.8 glycosyl transferase compare
AO353_01410 -0.9 -2.1 ribonuclease E compare
AO353_21895 -0.8 -1.6 molybdenum cofactor biosynthesis protein MoaD compare
AO353_20340 -0.8 -2.1 gamma-carboxygeranoyl-CoA hydratase compare
AO353_16810 -0.8 -2.2 recombinase RecX compare
AO353_00260 -0.8 -1.5 hypothetical protein compare
AO353_02270 -0.8 -2.6 isochorismatase compare
AO353_20800 -0.8 -1.3 hypothetical protein compare
AO353_20565 -0.8 -1.0 tRNA-Ala compare
AO353_06425 -0.8 -2.0 lipoyl synthase compare
AO353_08065 -0.8 -4.6 amino acid dehydrogenase compare
AO353_02005 -0.8 -1.3 hypothetical protein compare
AO353_22645 -0.8 -1.3 hypothetical protein compare
AO353_08485 -0.8 -5.5 threonine dehydratase compare
AO353_14940 -0.8 -1.9 malate:quinone oxidoreductase compare
AO353_23495 -0.8 -1.5 SAM-dependent methyltransferase compare
AO353_20680 -0.8 -2.3 cell division protein compare
AO353_03025 -0.8 -3.1 acetylornithine aminotransferase compare
AO353_29000 -0.8 -2.1 pyridoxal-5'-phosphate-dependent protein subunit beta compare
AO353_27675 -0.8 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_27950 -0.8 -1.3 hypothetical protein compare
AO353_16055 -0.8 -2.1 hypothetical protein compare
AO353_22500 -0.8 -1.2 hypothetical protein compare
AO353_00460 -0.8 -1.5 TetR family transcriptional regulator compare
AO353_24535 -0.8 -1.5 hypothetical protein compare
AO353_23450 -0.8 -1.9 LysR family transcriptional regulator compare
AO353_28310 -0.8 -1.9 deaminase compare
AO353_16980 -0.8 -1.4 isochorismatase compare
AO353_13715 -0.8 -1.9 translation initiation factor Sui1 compare
AO353_00760 -0.8 -1.4 hypothetical protein compare
AO353_10885 -0.8 -3.2 metal ABC transporter permease compare
AO353_22475 -0.8 -2.0 alkaline phosphatase compare
AO353_01265 -0.8 -2.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO353_07255 -0.8 -5.7 polyamine ABC transporter substrate-binding protein compare
AO353_17445 -0.8 -1.5 hypothetical protein compare
AO353_06275 -0.8 -1.7 DNA polymerase III subunit epsilon compare
AO353_03630 -0.8 -4.8 porin compare
AO353_22855 -0.7 -1.7 hypothetical protein compare
AO353_00835 -0.7 -3.0 transporter compare
AO353_14935 -0.7 -1.9 aminopeptidase compare
AO353_00620 -0.7 -1.2 cytochrome C oxidase Cbb3 compare
AO353_15295 -0.7 -2.9 division/cell wall cluster transcriptional repressor MraZ compare
AO353_11750 -0.7 -1.4 ATPase compare
AO353_14740 -0.7 -1.4 GTP-binding protein compare
AO353_12150 -0.7 -2.7 histidine kinase compare
AO353_23810 -0.7 -2.5 transcriptional regulator compare
AO353_01915 -0.7 -1.0 GlcG protein compare
AO353_08875 -0.7 -1.4 amino acid ABC transporter ATP-binding protein compare
AO353_04810 -0.7 -1.0 hypothetical protein compare
AO353_21805 -0.7 -2.0 peptidylprolyl isomerase compare
AO353_17525 -0.7 -2.2 tRNA-Gly compare
AO353_26630 -0.7 -2.4 ArsR family transcriptional regulator compare
AO353_04175 -0.7 -1.7 glycerol uptake facilitator GlpF compare
AO353_07075 -0.7 -2.1 elongation factor Tu compare
AO353_02220 -0.7 -1.0 hypothetical protein compare
AO353_09960 -0.7 -3.2 L-asparaginase (EC 3.5.1.1) (from data) compare
AO353_23410 -0.7 -1.3 hypothetical protein compare
AO353_16835 -0.7 -1.4 LuxR family transcriptional regulator compare
AO353_21430 -0.7 -1.7 hypothetical protein compare
AO353_17885 -0.7 -1.1 hypothetical protein compare
AO353_12020 -0.7 -1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Aspartic Acid in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Aspartic Acid across organisms