Experiment set2IT042 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Thallium(I) acetate 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_731 -4.4 -4.2 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_337 -3.3 -4.9 O-antigen export system permease protein RfbD compare
Pf1N1B4_1460 -3.0 -9.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf1N1B4_1461 -3.0 -3.9 Protein fixF compare
Pf1N1B4_2764 -2.7 -5.9 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) conserved
Pf1N1B4_1463 -2.6 -9.5 hypothetical protein compare
Pf1N1B4_2106 -2.6 -3.8 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1403 -2.6 -8.0 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_5659 -2.4 -12.5 NfuA Fe-S protein maturation compare
Pf1N1B4_2416 -2.3 -7.8 Choline dehydrogenase (EC 1.1.99.1) conserved
Pf1N1B4_336 -2.3 -13.9 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_1554 -2.2 -7.7 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_1695 -2.2 -2.4 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_2418 -2.1 -5.7 HTH-type transcriptional regulator BetI conserved
Pf1N1B4_2958 -2.0 -2.8 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_3547 -2.0 -3.3 DNA-binding response regulator compare
Pf1N1B4_3566 -2.0 -8.3 Phenylalanine-4-hydroxylase (EC 1.14.16.1) compare
Pf1N1B4_2386 -1.9 -5.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf1N1B4_2668 -1.9 -10.0 DedA protein compare
Pf1N1B4_769 -1.9 -7.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4740 -1.7 -3.1 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2417 -1.7 -3.3 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_1632 -1.6 -4.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_2734 -1.6 -2.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_1958 -1.6 -2.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2026 -1.6 -3.4 Transcriptional regulator compare
Pf1N1B4_1888 -1.5 -4.0 Glutamate-aspartate carrier protein compare
Pf1N1B4_2550 -1.5 -4.5 Lipoate-protein ligase A compare
Pf1N1B4_2005 -1.5 -2.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3751 -1.5 -2.4 FIG00953060: hypothetical protein compare
Pf1N1B4_2037 -1.4 -3.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_5146 -1.4 -3.0 Chromosome initiation inhibitor compare
Pf1N1B4_2105 -1.4 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_407 -1.4 -1.2 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_384 -1.4 -2.1 proteinase inhibitor compare
Pf1N1B4_6035 -1.4 -3.7 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_3005 -1.4 -8.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_4957 -1.4 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_2163 -1.3 -1.8 hypothetical protein compare
Pf1N1B4_4028 -1.3 -3.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3248 -1.3 -3.9 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf1N1B4_379 -1.3 -3.6 Protein of unknown function UPF0060 compare
Pf1N1B4_880 -1.3 -4.5 Putative preQ0 transporter compare
Pf1N1B4_2560 -1.3 -4.6 hypothetical protein compare
Pf1N1B4_1830 -1.3 -6.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1916 -1.3 -2.2 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_3911 -1.3 -3.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_1637 -1.2 -2.1 FIG00954739: hypothetical protein compare
Pf1N1B4_3439 -1.2 -2.3 hypothetical protein compare
Pf1N1B4_1865 -1.2 -4.7 Methionine ABC transporter permease protein compare
Pf1N1B4_5898 -1.2 -3.4 hypothetical protein compare
Pf1N1B4_1115 -1.2 -7.2 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_5709 -1.2 -2.4 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_2209 -1.2 -6.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1126 -1.2 -2.8 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_5675 -1.2 -2.7 hypothetical protein compare
Pf1N1B4_412 -1.2 -1.7 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_3143 -1.1 -2.5 RecA protein compare
Pf1N1B4_1475 -1.1 -5.2 FIG00962376: hypothetical protein compare
Pf1N1B4_4212 -1.1 -2.0 Gfa-like protein compare
Pf1N1B4_72 -1.1 -2.1 Transcriptional regulator, LysR family compare
Pf1N1B4_2987 -1.1 -2.8 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_1474 -1.1 -3.7 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_3206 -1.1 -1.9 Short chain dehydrogenase compare
Pf1N1B4_4139 -1.1 -1.8 Transcriptional regulator, MerR family compare
Pf1N1B4_4833 -1.1 -3.1 DNA-binding response regulator, LuxR family compare
Pf1N1B4_141 -1.1 -5.2 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_2724 -1.1 -5.1 Transcriptional regulator, AsnC family compare
Pf1N1B4_2218 -1.1 -4.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf1N1B4_5624 -1.1 -3.0 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_2036 -1.1 -2.8 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_780 -1.1 -3.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2189 -1.1 -3.1 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_2102 -1.1 -1.3 hypothetical protein compare
Pf1N1B4_1042 -1.1 -2.9 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_2048 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_5109 -1.1 -2.1 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_2384 -1.1 -6.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1866 -1.0 -2.6 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_4040 -1.0 -2.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3184 -1.0 -2.3 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_1614 -1.0 -2.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_5243 -1.0 -3.3 hypothetical protein compare
Pf1N1B4_4857 -1.0 -4.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2856 -1.0 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_5278 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_3906 -1.0 -3.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1581 -1.0 -2.3 Histidine ammonia-lyase (EC 4.3.1.3) compare
Pf1N1B4_5837 -1.0 -3.6 Transcriptional regulator, LysR family compare
Pf1N1B4_1116 -1.0 -6.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_4446 -1.0 -1.9 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_1730 -1.0 -2.2 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_3546 -1.0 -1.4 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_3686 -1.0 -4.8 Branched-chain amino acid transport system carrier protein compare
Pf1N1B4_1399 -1.0 -3.1 FIG003573: hypothetical protein compare
Pf1N1B4_835 -1.0 -2.5 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_5279 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_2736 -1.0 -2.4 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_3833 -1.0 -5.1 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2435 -1.0 -2.5 hypothetical protein compare
Pf1N1B4_3559 -0.9 -7.0 Aromatic amino acid transport protein AroP compare
Pf1N1B4_5073 -0.9 -3.1 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_1756 -0.9 -2.1 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases compare
Pf1N1B4_4156 -0.9 -1.8 putative secreted protein compare
Pf1N1B4_3656 -0.9 -1.9 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_3567 -0.9 -5.5 Phenylalanine hydroxylase transcriptional activator PhhR compare
Pf1N1B4_3703 -0.9 -2.2 NLP/P60 family protein compare
Pf1N1B4_3612 -0.9 -2.7 Flagellar hook-length control protein FliK compare
Pf1N1B4_5995 -0.9 -1.3 Transporter, MFS superfamily compare
Pf1N1B4_5762 -0.9 -2.2 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_3069 -0.9 -2.1 FIG00954614: hypothetical protein compare
Pf1N1B4_2178 -0.9 -1.4 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_1528 -0.9 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_606 -0.9 -1.4 Iron siderophore sensor protein compare
Pf1N1B4_2085 -0.9 -2.4 Uncharacterized protein similar to VCA0109 compare
Pf1N1B4_4979 -0.9 -2.4 Transcriptional regulator, AsnC family compare
Pf1N1B4_3976 -0.9 -3.9 Transmembrane regulator protein PrtR compare
Pf1N1B4_4335 -0.9 -1.9 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_1626 -0.9 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1052 -0.9 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_2568 -0.9 -2.0 Translation elongation factor Tu compare
Pf1N1B4_5255 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_21 -0.9 -2.5 Probable hydrolase compare
Pf1N1B4_4194 -0.9 -2.3 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_799 -0.9 -0.8 hypothetical protein compare
Pf1N1B4_3006 -0.9 -3.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_5100 -0.9 -1.9 Transcriptional regulator ahyR/asaR family compare
Pf1N1B4_1872 -0.9 -4.7 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_4544 -0.9 -0.9 Uncharacterized protein ImpA compare
Pf1N1B4_910 -0.9 -2.5 Cyanate transport protein CynX compare
Pf1N1B4_4418 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_4518 -0.9 -2.0 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_1235 -0.9 -3.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2377 -0.9 -4.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1003 -0.9 -1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1624 -0.8 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3508 -0.8 -2.8 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2442 -0.8 -2.3 Electron transfer flavoprotein, beta subunit compare
Pf1N1B4_65 -0.8 -4.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_2150 -0.8 -1.7 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_7 -0.8 -2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_4866 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_2552 -0.8 -2.4 OsmC/Ohr family protein compare
Pf1N1B4_5718 -0.8 -1.6 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_5955 -0.8 -2.2 Permease of the major facilitator superfamily compare
Pf1N1B4_563 -0.8 -2.4 RNA polymerase sigma-70 factor compare
Pf1N1B4_3785 -0.8 -1.0 FOG: Ankyrin repeat compare
Pf1N1B4_4429 -0.8 -1.5 No significant database matches compare
Pf1N1B4_886 -0.8 -1.8 FIG137478: Hypothetical protein compare
Pf1N1B4_1561 -0.8 -2.2 FIG00954300: hypothetical protein compare
Pf1N1B4_3563 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_6028 -0.8 -2.8 FIG00954052: hypothetical protein compare
Pf1N1B4_4913 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_4299 -0.8 -2.1 sensor histidine kinase compare
Pf1N1B4_4359 -0.8 -2.4 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_2360 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4193 -0.8 -2.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_1693 -0.8 -3.7 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf1N1B4_1441 -0.8 -5.0 Putative esterase, FIGfam005057 compare
Pf1N1B4_1434 -0.8 -3.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3855 -0.8 -2.1 Chromosome partition protein smc compare
Pf1N1B4_4368 -0.8 -1.9 Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_4274 -0.8 -2.3 5-keto-2-deoxygluconokinase (EC 2.7.1.92) / uncharacterized domain compare
Pf1N1B4_4055 -0.8 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_1234 -0.8 -2.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1040 -0.7 -2.9 FolM Alternative dihydrofolate reductase 1 compare
Pf1N1B4_2035 -0.7 -3.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_378 -0.7 -2.6 Carbon storage regulator compare
Pf1N1B4_1057 -0.7 -1.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1069 -0.7 -3.1 YrbA protein compare
Pf1N1B4_1035 -0.7 -2.5 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) compare
Pf1N1B4_101 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_92 -0.7 -2.1 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_5737 -0.7 -1.8 Nitrate/nitrite transporter compare
Pf1N1B4_364 -0.7 -2.4 Rhodanese domain protein UPF0176 compare
Pf1N1B4_4627 -0.7 -1.6 FIG00957600: hypothetical protein compare
Pf1N1B4_1974 -0.7 -1.8 L-lysine permease compare
Pf1N1B4_344 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_4322 -0.7 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_989 -0.7 -3.3 Alginate lyase precursor (EC 4.2.2.3) compare
Pf1N1B4_1615 -0.7 -2.1 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_876 -0.7 -2.4 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_522 -0.7 -1.4 HlyD family secretion protein compare
Pf1N1B4_2272 -0.7 -2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_867 -0.7 -2.0 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_3222 -0.7 -0.7 Ferredoxin compare
Pf1N1B4_2870 -0.7 -1.2 Regulator of competence-specific genes compare
Pf1N1B4_77 -0.7 -2.2 FIG00956064: hypothetical protein compare
Pf1N1B4_5575 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_2114 -0.7 -3.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_4632 -0.7 -1.9 Exonuclease SbcC compare
Pf1N1B4_5105 -0.7 -1.7 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_2193 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_2493 -0.7 -1.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3290 -0.7 -1.4 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_4014 -0.7 -3.1 FIG00954026: hypothetical protein compare
Pf1N1B4_1627 -0.7 -2.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4839 -0.7 -1.1 lipoprotein compare
Pf1N1B4_1565 -0.7 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1845 -0.7 -1.7 FIG00954395: hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas fluorescens FW300-N1B4

For stress Thallium(I) acetate across organisms