Experiment set2IT042 for Shewanella loihica PV-4

Compare to:

LB with Sodium nitrite 200 mM

200 most detrimental genes:

  gene name fitness t score description  
Shew_1058 +2.4 10.2 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_2049 +2.3 6.8 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_2000 +2.3 3.5 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_0755 +2.2 5.2 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_0296 +2.1 1.8 heat shock protein Hsp20 (RefSeq) compare
Shew_2642 +2.1 4.8 flavodoxin (RefSeq) compare
Shew_3388 +2.1 1.4 hypothetical protein (RefSeq) compare
Shew_1224 +1.9 14.7 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1601 +1.9 2.9 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_3660 +1.9 15.6 glutathione reductase (RefSeq) compare
Shew_1298 guaA +1.8 11.2 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_2320 +1.5 7.6 RNA methyltransferase (RefSeq) compare
Shew_2666 +1.5 8.2 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_3267 +1.5 5.5 sodium/hydrogen exchanger (RefSeq) compare
Shew_2572 +1.4 6.2 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_2327 +1.4 1.0 hypothetical protein (RefSeq) compare
Shew_2667 +1.4 9.1 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_1714 +1.4 2.6 alpha/beta hydrolase fold (RefSeq) compare
Shew_2656 +1.4 8.0 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_0462 +1.4 1.4 hypothetical protein (RefSeq) compare
Shew_2668 +1.3 5.7 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_1819 +1.3 3.1 GntR family transcriptional regulator (RefSeq) compare
Shew_1092 +1.3 7.9 amino acid carrier protein (RefSeq) compare
Shew_0570 +1.3 1.2 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_1657 sucC +1.3 1.7 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_3500 +1.3 2.8 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2664 +1.3 5.5 transcriptional regulator, putative (RefSeq) compare
Shew_1713 +1.3 2.4 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1992 +1.2 2.9 hypothetical protein (RefSeq) compare
Shew_2665 +1.2 9.9 beta-ketoacyl synthase (RefSeq) compare
Shew_3522 +1.2 1.7 hypothetical protein (RefSeq) compare
Shew_1278 +1.2 0.9 hypothetical protein (RefSeq) compare
Shew_3681 +1.2 7.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0127 +1.2 3.7 LexA repressor (RefSeq) compare
Shew_0450 +1.1 5.0 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_3442 +1.1 2.8 hypothetical protein (RefSeq) compare
Shew_2282 +1.1 1.8 Fis family transcriptional regulator (RefSeq) compare
Shew_0421 +1.1 1.2 phage shock protein C, PspC (RefSeq) compare
Shew_0343 +1.1 1.5 hypothetical protein (RefSeq) compare
Shew_3487 pyrE +1.1 4.2 orotate phosphoribosyltransferase (RefSeq) compare
Shew_3682 +1.1 7.0 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1488 +1.1 2.5 FAD linked oxidase domain-containing protein (RefSeq) compare
Shew_2646 +1.1 1.0 hypothetical protein (RefSeq) compare
Shew_0695 +1.1 1.8 hypothetical protein (RefSeq) compare
Shew_3295 +1.1 6.4 AFG1 family ATPase (RefSeq) compare
Shew_1341 +1.1 2.8 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_1202 +1.1 5.3 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_2785 +1.1 1.0 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_1865 +1.0 2.8 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1781 +1.0 1.3 hypothetical protein (RefSeq) compare
Shew_1602 +1.0 2.2 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_0763 +1.0 4.1 putative PAS/PAC sensor protein (RefSeq) compare
Shew_1223 +1.0 1.1 hypothetical protein (RefSeq) compare
Shew_3710 tdh +1.0 4.8 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_2194 +1.0 0.8 hypothetical protein (RefSeq) compare
Shew_0728 +1.0 6.0 dihydroorotase (RefSeq) compare
Shew_2906 +1.0 1.5 hypothetical protein (RefSeq) compare
Shew_2890 +1.0 1.3 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_0799 +1.0 2.0 MarR family transcriptional regulator (RefSeq) compare
Shew_1078 +1.0 6.5 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_2367 +1.0 0.9 hypothetical protein (RefSeq) compare
Shew_2061 +1.0 1.3 radical SAM domain-containing protein (RefSeq) compare
Shew_3262 +0.9 0.9 hypothetical protein (RefSeq) compare
Shew_3709 +0.9 6.2 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_2236 +0.9 3.4 adenine phosphoribosyltransferase (RefSeq) compare
Shew_0718 +0.9 2.9 cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq) compare
Shew_3786 +0.9 1.0 hypothetical protein (RefSeq) compare
Shew_1810 +0.9 2.7 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_1514 upp +0.9 2.6 uracil phosphoribosyltransferase (RefSeq) compare
Shew_2406 +0.8 1.5 AraC family transcriptional regulator (RefSeq) compare
Shew_1432 +0.8 1.2 ferredoxin-type protein NapF (RefSeq) compare
Shew_3247 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_3499 +0.8 2.4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_2349 +0.8 2.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_3483 dut +0.8 0.9 deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) compare
Shew_1287 +0.8 2.3 hypothetical protein (RefSeq) compare
Shew_1437 +0.8 3.4 transcriptional regulator, TyrR (RefSeq) compare
Shew_1477 +0.8 2.7 anti-ECFsigma factor, ChrR (RefSeq) compare
Shew_1257 +0.8 1.7 DNA repair protein RadC (RefSeq) compare
Shew_1867 +0.8 2.6 hypothetical protein (RefSeq) compare
Shew_1455 +0.7 0.7 dual specificity protein phosphatase (RefSeq) compare
Shew_0722 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_0782 +0.7 2.2 DNA-binding transcriptional regulator AsnC (RefSeq) compare
Shew_3498 rpoZ +0.7 2.0 DNA-directed RNA polymerase subunit omega (RefSeq) compare
Shew_2458 +0.7 0.7 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_0413 +0.7 3.1 ABC-2 type transporter (RefSeq) compare
Shew_1782 +0.7 4.8 MarR family transcriptional regulator (RefSeq) compare
Shew_1811 +0.7 3.4 hypothetical protein (RefSeq) compare
Shew_1716 +0.7 1.1 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq) compare
Shew_2106 +0.7 3.2 hypothetical protein (RefSeq) compare
Shew_3383 +0.7 1.2 hypothetical protein (RefSeq) compare
Shew_0678 +0.7 2.0 protoporphyrinogen oxidase (RefSeq) compare
Shew_0057 +0.7 1.7 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_2643 +0.7 1.0 pseudouridylate synthase (RefSeq) compare
Shew_1458 +0.7 4.0 serine/threonine transporter SstT (RefSeq) compare
Shew_3063 +0.7 1.1 glycine cleavage system protein H (RefSeq) compare
Shew_0932 +0.7 1.1 radical SAM domain-containing protein (RefSeq) compare
Shew_1683 +0.7 1.3 hypothetical protein (RefSeq) compare
Shew_0091 +0.7 3.4 molybdopterin biosynthesis MoaE (RefSeq) compare
Shew_1230 +0.7 1.9 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) compare
Shew_2175 nhaB +0.7 3.0 sodium/proton antiporter (RefSeq) compare
Shew_0860 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_0738 +0.7 0.7 NTPase (RefSeq) compare
Shew_2153 +0.7 0.8 LysR family transcriptional regulator (RefSeq) compare
Shew_0097 +0.7 2.6 two component transcriptional regulator (RefSeq) compare
Shew_0261 +0.7 0.5 hypothetical protein (RefSeq) compare
Shew_1510 +0.7 1.2 peptidase M28 (RefSeq) compare
Shew_2121 +0.7 1.9 diguanylate cyclase (RefSeq) compare
Shew_0301 +0.7 0.8 AsnC family transcriptional regulator (RefSeq) compare
Shew_2300 +0.7 1.8 hypothetical protein (RefSeq) compare
Shew_3427 +0.6 3.1 patatin (RefSeq) compare
Shew_0220 +0.6 2.0 phosphoglycolate phosphatase (RefSeq) compare
Shew_1457 +0.6 2.1 response regulator receiver modulated CheW protein (RefSeq) compare
Shew_3716 +0.6 2.9 cytochrome c, class I (RefSeq) compare
Shew_1859 +0.6 0.6 carbonate dehydratase (RefSeq) compare
Shew_3064 gcvT +0.6 4.3 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_3432 pdhR +0.6 1.2 transcriptional regulator PdhR (RefSeq) compare
Shew_1357 +0.6 3.4 flagellin domain-containing protein (RefSeq) compare
Shew_1531 grxA +0.6 1.4 glutaredoxin 1 (RefSeq) compare
Shew_1518 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_3271 +0.6 3.4 galactokinase (RefSeq) compare
Shew_0571 +0.6 0.8 cytochrome b/b6 domain-containing protein (RefSeq) compare
Shew_1114 +0.6 1.2 SapC family protein (RefSeq) compare
Shew_3653 +0.6 0.8 hypothetical protein (RefSeq) compare
Shew_3069 +0.6 0.8 5-formyltetrahydrofolate cyclo-ligase (RefSeq) compare
Shew_3664 +0.6 3.8 alpha-L-glutamate ligase (RefSeq) compare
Shew_1186 +0.6 1.4 transcriptional regulator NrdR (RefSeq) compare
Shew_1961 +0.6 1.6 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_1592 +0.6 1.4 sulphate transporter (RefSeq) compare
Shew_1812 +0.6 3.8 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_1546 +0.6 1.4 thioesterase superfamily protein (RefSeq) compare
Shew_2140 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_1990 +0.6 1.2 heavy metal translocating P-type ATPase (RefSeq) compare
Shew_0322 +0.6 2.5 diaminopimelate decarboxylase (RefSeq) compare
Shew_0327 +0.6 1.5 HupE/UreJ protein (RefSeq) compare
Shew_1681 +0.6 1.8 diguanylate cyclase with PAS/PAC sensor (RefSeq) compare
Shew_2644 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_3537 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_2751 rdgC +0.6 1.8 recombination associated protein (RefSeq) compare
Shew_1563 +0.6 2.8 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1159 +0.6 1.5 thioesterase superfamily protein (RefSeq) compare
Shew_0647 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_0620 +0.6 0.9 ion transport 2 domain-containing protein (RefSeq) compare
Shew_1071 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_1575 +0.6 2.6 uridine kinase (RefSeq) compare
Shew_2174 +0.6 0.4 fatty acid metabolism regulator (RefSeq) compare
Shew_3520 +0.6 3.0 hypothetical protein (RefSeq) compare
Shew_0098 +0.6 3.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1590 +0.5 0.4 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_1013 +0.5 4.8 aspartate carbamoyltransferase (RefSeq) compare
Shew_3324 +0.5 2.2 hypothetical protein (RefSeq) compare
Shew_0290 ilvM +0.5 1.4 acetolactate synthase 2 regulatory subunit (RefSeq) compare
Shew_1470 +0.5 2.7 sulfatase (RefSeq) compare
Shew_3517 +0.5 3.6 histidine ammonia-lyase (RefSeq) compare
Shew_1356 +0.5 2.2 flagellin domain-containing protein (RefSeq) compare
Shew_2054 +0.5 0.7 Smr protein/MutS2 (RefSeq) compare
Shew_0136 +0.5 3.1 stearoyl-CoA 9-desaturase (RefSeq) compare
Shew_0433 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_0827 +0.5 0.6 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_0412 +0.5 1.6 secretion protein HlyD family protein (RefSeq) compare
Shew_2528 +0.5 1.5 transcriptional regulator, CdaR (RefSeq) compare
Shew_1133 +0.5 3.3 hypothetical protein (RefSeq) compare
Shew_0430 +0.5 1.1 histone family protein DNA-binding protein (RefSeq) compare
Shew_1295 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_2652 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_3513 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_2639 +0.5 1.1 hypothetical protein (RefSeq) compare
Shew_1498 +0.5 2.6 hypothetical protein (RefSeq) compare
Shew_1891 +0.5 0.9 Fmu (Sun) domain-containing protein (RefSeq) compare
Shew_1532 +0.5 2.5 type III restriction enzyme, res subunit (RefSeq) compare
Shew_0584 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_3527 +0.5 1.0 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_1682 +0.5 0.5 ribonuclease H (RefSeq) compare
Shew_0396 +0.5 0.6 methylation site containing protein (RefSeq) compare
Shew_2882 +0.5 1.6 S-ribosylhomocysteinase (RefSeq) compare
Shew_1059 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_2237 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_2589 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_2389 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_0651 +0.5 1.1 hypothetical protein (RefSeq) compare
Shew_0108 +0.5 2.9 polysaccharide deacetylase (RefSeq) compare
Shew_0821 +0.5 0.8 mitomycin resistance protein (RefSeq) compare
Shew_1344 +0.5 1.7 MCP methyltransferase, CheR-type (RefSeq) compare
Shew_3020 +0.5 2.8 hypothetical protein (RefSeq) compare
Shew_0759 +0.5 1.8 cytochrome c, putative (RefSeq) compare
Shew_2147 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_2558 +0.5 1.6 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_0197 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_0854 +0.5 1.6 hypothetical protein (RefSeq) compare
Shew_0618 +0.5 0.8 hypothetical protein (RefSeq) compare
Shew_1583 yebU +0.5 1.7 rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) compare
Shew_0055 +0.5 4.0 hypothetical protein (RefSeq) compare
Shew_1519 +0.5 1.8 hypothetical protein (RefSeq) compare
Shew_1686 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_1679 +0.5 0.5 TetR family transcriptional regulator (RefSeq) compare
Shew_0795 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_1776 +0.5 1.9 acetolactate synthase 3 catalytic subunit (RefSeq) compare
Shew_2241 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_3689 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_0973 +0.5 2.0 extracellular solute-binding protein (RefSeq) compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sodium nitrite in Shewanella loihica PV-4

For stress Sodium nitrite across organisms