Experiment set2IT042 for Ralstonia sp. UNC404CL21Col

Compare to:

Beta-alanine carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14500 -7.2 -7.0 tryptophan synthase subunit beta compare
ABZR87_RS01810 -6.9 -4.8 glutamate 5-kinase compare
ABZR87_RS02160 -6.9 -6.7 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14505 -6.5 -6.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS02570 -6.2 -22.9 glutamate synthase-related protein compare
ABZR87_RS09465 -6.1 -7.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS16170 -6.1 -7.3 argininosuccinate lyase compare
ABZR87_RS05100 -5.8 -9.0 RNA polymerase-binding protein DksA compare
ABZR87_RS14535 -5.8 -6.9 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS13790 -5.8 -13.5 chorismate synthase compare
ABZR87_RS00435 -5.7 -12.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14530 -5.6 -8.6 3-isopropylmalate dehydrogenase compare
ABZR87_RS07360 -5.6 -17.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS09450 -5.6 -10.1 prephenate dehydratase compare
ABZR87_RS02640 -5.5 -18.5 diaminopimelate decarboxylase compare
ABZR87_RS02565 -5.4 -7.4 glutamate synthase subunit beta compare
ABZR87_RS06770 -5.4 -11.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS13175 -5.4 -3.7 tRNA-Leu compare
ABZR87_RS00210 -5.3 -8.9 nitrite/sulfite reductase compare
ABZR87_RS00190 -5.2 -13.1 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS14490 -5.2 -11.5 tryptophan synthase subunit alpha compare
ABZR87_RS02155 -5.1 -9.3 anthranilate phosphoribosyltransferase compare
ABZR87_RS02595 -5.1 -10.2 shikimate kinase compare
ABZR87_RS08630 -5.1 -11.6 dihydroorotase compare
ABZR87_RS01110 -5.1 -11.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS00835 -5.1 -5.0 argininosuccinate synthase compare
ABZR87_RS05200 -5.0 -21.4 homoserine O-acetyltransferase compare
ABZR87_RS02140 -5.0 -21.6 anthranilate synthase component I compare
ABZR87_RS14540 -4.9 -9.5 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS08625 -4.9 -4.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS19665 -4.9 -11.4 CoA-acylating methylmalonate-semialdehyde dehydrogenase conserved
ABZR87_RS22970 -4.8 -11.4 cystathionine gamma-synthase family protein compare
ABZR87_RS00200 -4.8 -6.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS05170 -4.7 -3.3 acetylglutamate kinase compare
ABZR87_RS05590 -4.6 -5.4 orotate phosphoribosyltransferase compare
ABZR87_RS13415 -4.5 -9.2 IclR family transcriptional regulator compare
ABZR87_RS02590 -4.5 -11.3 3-dehydroquinate synthase compare
ABZR87_RS11625 -4.5 -11.8 malate synthase A compare
ABZR87_RS14950 -4.4 -4.3 acetolactate synthase small subunit compare
ABZR87_RS12790 -4.3 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06315 -4.3 -17.8 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS02145 -4.3 -4.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS09935 -4.2 -6.4 amino acid aminotransferase compare
ABZR87_RS09515 -4.1 -2.8 cysteine synthase CysM compare
ABZR87_RS00195 -4.0 -6.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS19655 -4.0 -11.0 PLP-dependent aminotransferase family protein compare
ABZR87_RS12785 -4.0 -9.6 endopeptidase La compare
ABZR87_RS00305 -3.8 -17.4 ABC transporter ATP-binding protein compare
ABZR87_RS00220 -3.6 -11.0 CysB family HTH-type transcriptional regulator compare
ABZR87_RS14955 -3.5 -4.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS19660 -3.5 -7.1 aspartate aminotransferase family protein conserved
ABZR87_RS13745 -3.5 -16.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS00185 -3.4 -5.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00295 -3.4 -3.5 ABC transporter ATP-binding protein compare
ABZR87_RS05350 -3.3 -4.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00310 -3.3 -9.7 branched-chain amino acid ABC transporter permease compare
ABZR87_RS00315 -3.2 -11.5 branched-chain amino acid ABC transporter substrate-binding protein compare
ABZR87_RS00300 -3.2 -8.5 ABC transporter ATP-binding protein compare
ABZR87_RS04865 -3.1 -7.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02655 -3.1 -8.7 anti-sigma factor compare
ABZR87_RS00875 -3.1 -5.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS07665 -3.0 -12.5 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS06725 -3.0 -19.0 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS16125 -2.9 -11.0 heme biosynthesis protein HemY compare
ABZR87_RS00285 -2.9 -2.8 acetylornithine transaminase compare
ABZR87_RS07050 -2.8 -3.2 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS11815 -2.8 -12.1 [protein-PII] uridylyltransferase compare
ABZR87_RS12795 -2.7 -6.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS13645 -2.6 -2.1 hypothetical protein compare
ABZR87_RS09460 -2.6 -4.8 prephenate dehydrogenase compare
ABZR87_RS04995 -2.5 -4.8 DNA topoisomerase III compare
ABZR87_RS16735 -2.5 -17.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS04785 -2.4 -11.1 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS06645 -2.4 -2.8 TlpA disulfide reductase family protein compare
ABZR87_RS07635 -2.4 -3.6 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS10240 -2.4 -3.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS16180 -2.4 -3.9 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS16075 -2.3 -8.2 trimeric intracellular cation channel family protein compare
ABZR87_RS01645 -2.3 -3.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS04125 -2.3 -6.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS07620 -2.2 -4.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS17115 -2.2 -4.8 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS16730 -2.1 -5.6 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS02480 -2.0 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS06715 -2.0 -2.6 PTS sugar transporter subunit IIA compare
ABZR87_RS10610 -2.0 -2.3 inositol monophosphatase family protein compare
ABZR87_RS13475 -2.0 -7.5 PAS domain S-box protein compare
ABZR87_RS16185 -1.9 -1.9 dCTP deaminase compare
ABZR87_RS09635 -1.9 -3.0 ribosome small subunit-dependent GTPase A compare
ABZR87_RS11065 -1.9 -6.8 nitrogen regulation protein NR(II) compare
ABZR87_RS16960 -1.8 -5.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS16250 -1.8 -4.6 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS00205 -1.8 -2.0 DUF934 domain-containing protein compare
ABZR87_RS12775 -1.7 -5.6 tRNA-Val compare
ABZR87_RS11615 -1.7 -4.6 LysR family transcriptional regulator compare
ABZR87_RS09625 -1.7 -11.7 CobD/CbiB family protein compare
ABZR87_RS08695 -1.7 -11.1 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS09565 -1.7 -8.7 Lrp/AsnC ligand binding domain-containing protein conserved
ABZR87_RS10620 -1.6 -2.1 serine O-acetyltransferase compare
ABZR87_RS16885 -1.6 -2.4 hypothetical protein compare
ABZR87_RS01425 -1.6 -3.9 ferric iron uptake transcriptional regulator compare
ABZR87_RS12800 -1.5 -4.9 trigger factor compare
ABZR87_RS11125 -1.5 -6.2 cell division protein ZapE compare
ABZR87_RS16130 -1.5 -3.3 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
ABZR87_RS07705 -1.5 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS17565 -1.5 -3.2 helix-turn-helix transcriptional regulator compare
ABZR87_RS15440 -1.5 -3.0 ribonuclease G compare
ABZR87_RS01690 -1.5 -1.5 collagen-like triple helix repeat-containing protein compare
ABZR87_RS10785 -1.4 -5.3 exodeoxyribonuclease V subunit beta compare
ABZR87_RS16070 -1.4 -3.5 Smr/MutS family protein compare
ABZR87_RS11940 -1.4 -3.4 SsrA-binding protein SmpB compare
ABZR87_RS01225 -1.4 -3.9 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS14115 -1.3 -4.3 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -1.3 -5.1 NUDIX domain-containing protein compare
ABZR87_RS09895 -1.3 -1.6 DUF1841 family protein compare
ABZR87_RS08700 -1.3 -8.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS09085 -1.3 -6.8 DUF883 family protein compare
ABZR87_RS17310 -1.3 -5.6 PadR family transcriptional regulator compare
ABZR87_RS07020 -1.3 -9.6 dynamin-like GTPase family protein compare
ABZR87_RS11590 -1.3 -7.6 isocitrate lyase compare
ABZR87_RS00215 -1.3 -3.8 sulfite exporter TauE/SafE family protein compare
ABZR87_RS15065 -1.3 -3.7 TMEM165/GDT1 family protein compare
ABZR87_RS07035 -1.2 -6.4 RNase adapter RapZ compare
ABZR87_RS06705 -1.2 -8.6 glutamate--cysteine ligase compare
ABZR87_RS10780 -1.2 -3.7 PD-(D/E)XK nuclease family protein compare
ABZR87_RS06710 -1.2 -9.4 glutathione synthase compare
ABZR87_RS08645 -1.2 -1.3 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS16845 -1.2 -1.3 hypothetical protein compare
ABZR87_RS01350 -1.2 -6.1 NAD(P) transhydrogenase subunit alpha compare
ABZR87_RS07470 -1.2 -5.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS05065 -1.1 -3.0 tyrosine recombinase XerC compare
ABZR87_RS02375 -1.1 -8.0 cytochrome c1 compare
ABZR87_RS09615 -1.1 -2.1 50S ribosomal protein L19 compare
ABZR87_RS22690 -1.1 -3.4 XRE family transcriptional regulator compare
ABZR87_RS06845 -1.1 -6.5 heme o synthase compare
ABZR87_RS08640 -1.1 -6.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS09080 -1.1 -4.7 phage holin family protein compare
ABZR87_RS20730 -1.1 -0.8 hypothetical protein compare
ABZR87_RS11675 -1.1 -3.3 disulfide bond formation protein B compare
ABZR87_RS04945 -1.1 -2.6 DUF4390 domain-containing protein compare
ABZR87_RS10525 -1.1 -1.9 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS01340 -1.1 -5.2 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
ABZR87_RS01615 -1.1 -2.2 RNB domain-containing ribonuclease compare
ABZR87_RS11070 -1.1 -6.3 nitrogen regulation protein NR(I) compare
ABZR87_RS01430 -1.1 -8.5 LysR family transcriptional regulator compare
ABZR87_RS05025 -1.1 -1.1 rod shape-determining protein MreC compare
ABZR87_RS10980 -1.0 -2.1 tRNA-Leu compare
ABZR87_RS01355 -1.0 -8.1 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
ABZR87_RS07730 -1.0 -2.0 lysophospholipid acyltransferase family protein compare
ABZR87_RS15810 -1.0 -4.3 hypothetical protein compare
ABZR87_RS14675 -1.0 -1.1 glyoxalase compare
ABZR87_RS06855 -1.0 -3.3 RNA polymerase sigma factor RpoH compare
ABZR87_RS07675 -1.0 -6.5 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS17525 -1.0 -6.8 helix-turn-helix domain-containing protein compare
ABZR87_RS05015 -1.0 -4.0 penicillin-binding protein 2 compare
ABZR87_RS19835 -1.0 -6.1 D-amino acid dehydrogenase compare
ABZR87_RS09560 -0.9 -6.0 D-amino acid dehydrogenase compare
ABZR87_RS04940 -0.9 -5.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS06395 -0.9 -4.4 response regulator compare
ABZR87_RS02575 -0.9 -3.2 transposase compare
ABZR87_RS11015 -0.9 -4.7 amino-acid N-acetyltransferase compare
ABZR87_RS13285 -0.9 -6.1 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS06810 -0.9 -5.1 cytochrome c oxidase assembly protein compare
ABZR87_RS14050 -0.9 -2.5 phosphohistidine phosphatase SixA compare
ABZR87_RS03705 -0.9 -1.6 DUF2892 domain-containing protein compare
ABZR87_RS02380 -0.9 -6.7 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS15250 -0.9 -6.1 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS13750 -0.9 -2.3 RidA family protein compare
ABZR87_RS20555 -0.9 -4.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS22920 -0.9 -3.1 phosphogluconate dehydratase compare
ABZR87_RS13755 -0.9 -4.9 alpha/beta hydrolase compare
ABZR87_RS11925 -0.9 -6.4 phosphoenolpyruvate synthase compare
ABZR87_RS07005 -0.9 -1.9 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS01685 -0.9 -4.0 histone H1-like DNA-binding protein compare
ABZR87_RS05140 -0.8 -1.5 ATP-binding protein compare
ABZR87_RS13300 -0.8 -5.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS08980 -0.8 -2.2 cell envelope integrity protein TolA compare
ABZR87_RS01640 -0.8 -3.0 TlpA disulfide reductase family protein compare
ABZR87_RS06800 -0.8 -6.6 cytochrome c oxidase subunit I compare
ABZR87_RS06840 -0.8 -4.6 COX15/CtaA family protein compare
ABZR87_RS03015 -0.8 -4.4 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR87_RS14510 -0.8 -2.8 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS00970 -0.8 -1.5 molecular chaperone DnaJ compare
ABZR87_RS08970 -0.8 -4.1 protein TolQ compare
ABZR87_RS12780 -0.8 -1.2 HU family DNA-binding protein compare
ABZR87_RS14010 -0.8 -2.1 avidin/streptavidin family protein compare
ABZR87_RS13315 -0.8 -6.3 RluA family pseudouridine synthase compare
ABZR87_RS09445 -0.8 -3.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS10400 -0.7 -1.4 hypothetical protein compare
ABZR87_RS03865 -0.7 -5.0 GntR family transcriptional regulator compare
ABZR87_RS18415 -0.7 -1.7 hypothetical protein compare
ABZR87_RS11970 -0.7 -1.9 hypothetical protein compare
ABZR87_RS15080 -0.7 -3.9 GntR family transcriptional regulator compare
ABZR87_RS00360 -0.7 -1.3 acyl-CoA desaturase compare
ABZR87_RS00830 -0.7 -2.0 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS07625 -0.7 -1.6 Holliday junction branch migration protein RuvA compare
ABZR87_RS14890 -0.7 -1.1 preprotein translocase subunit SecG compare
ABZR87_RS13250 -0.7 -2.6 phosphoserine phosphatase SerB compare
ABZR87_RS22520 -0.7 -1.3 ABATE domain-containing protein compare
ABZR87_RS09955 -0.7 -3.8 LacI family DNA-binding transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Beta-alanine in Ralstonia sp. UNC404CL21Col

For carbon source Beta-alanine across organisms