Experiment set2IT041 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with copper (II) chloride dihydrate 0.3125 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS11560 -3.9 -4.6 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS02445 -3.7 -3.6 membrane protein insertion efficiency factor YidD compare
LRK54_RS11565 -3.6 -3.5 anthranilate phosphoribosyltransferase compare
LRK54_RS02895 -3.3 -4.5 rhomboid family intramembrane serine protease compare
LRK54_RS04350 -3.3 -2.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS04585 -3.3 -2.3 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS14590 -3.2 -4.4 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS00705 -3.2 -9.7 alkyl hydroperoxide reductase subunit C compare
LRK54_RS12860 -3.1 -2.2 RNase adapter RapZ compare
LRK54_RS01585 -3.1 -6.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS17505 -3.1 -3.6 preprotein translocase subunit SecG compare
LRK54_RS00440 -3.1 -5.8 high frequency lysogenization protein HflD compare
LRK54_RS01580 -3.1 -8.1 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS00620 -3.0 -6.7 FtsH protease activity modulator HflK compare
LRK54_RS14825 -3.0 -4.1 protease HtpX compare
LRK54_RS06885 -3.0 -5.0 rhodanese-like domain-containing protein compare
LRK54_RS16940 -3.0 -2.9 RNA polymerase sigma factor RpoE compare
LRK54_RS01680 -3.0 -6.6 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS14695 -2.9 -11.6 rhomboid family intramembrane serine protease compare
LRK54_RS02325 -2.9 -3.5 SDR family oxidoreductase compare
LRK54_RS10355 -2.9 -2.0 threonine synthase compare
LRK54_RS06470 -2.9 -8.4 carboxy terminal-processing peptidase compare
LRK54_RS06685 -2.9 -10.4 TolC family outer membrane protein compare
LRK54_RS11170 -2.8 -1.9 NADP-dependent malic enzyme compare
LRK54_RS13760 -2.8 -6.7 trypsin-like peptidase domain-containing protein compare
LRK54_RS12945 -2.7 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS06415 -2.7 -1.8 hypothetical protein compare
LRK54_RS05415 -2.7 -5.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS04720 -2.7 -5.7 phosphoribosylformylglycinamidine synthase compare
LRK54_RS03290 -2.7 -1.8 RIP metalloprotease RseP compare
LRK54_RS16615 -2.6 -1.8 phosphopyruvate hydratase compare
LRK54_RS03710 -2.6 -7.2 tetratricopeptide repeat protein compare
LRK54_RS11975 -2.6 -5.6 SLC13 family permease compare
LRK54_RS01685 -2.6 -10.8 tryptophan synthase subunit beta compare
LRK54_RS07215 -2.6 -5.3 cytochrome c4 compare
LRK54_RS16660 -2.6 -8.3 VTT domain-containing protein compare
LRK54_RS02090 -2.6 -13.4 NAD-glutamate dehydrogenase compare
LRK54_RS04365 -2.6 -2.4 H-NS histone family protein compare
LRK54_RS00695 -2.6 -3.5 methylisocitrate lyase compare
LRK54_RS00675 -2.5 -9.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS05740 -2.5 -4.5 phosphoglycerate kinase compare
LRK54_RS05785 -2.5 -5.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS00615 -2.5 -6.0 protease modulator HflC compare
LRK54_RS05980 -2.5 -1.7 ATP-binding protein compare
LRK54_RS00670 -2.5 -2.4 OmpA family protein compare
LRK54_RS01365 -2.5 -6.4 heavy metal-responsive transcriptional regulator conserved
LRK54_RS04450 -2.4 -6.9 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS03125 -2.4 -1.7 preprotein translocase subunit YajC compare
LRK54_RS18050 -2.4 -10.6 lipopolysaccharide assembly protein LapB compare
LRK54_RS11375 -2.4 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS10855 -2.4 -4.0 protein-export chaperone SecB compare
LRK54_RS11570 -2.4 -4.3 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS12865 -2.4 -8.2 HPr(Ser) kinase/phosphatase compare
LRK54_RS02440 -2.4 -2.3 RNA polymerase-binding protein DksA compare
LRK54_RS05985 -2.4 -1.6 response regulator transcription factor compare
LRK54_RS07220 -2.4 -4.8 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS16755 -2.4 -2.3 SurA N-terminal domain-containing protein compare
LRK54_RS06755 -2.3 -15.7 LTA synthase family protein compare
LRK54_RS02535 -2.3 -4.6 50S ribosomal protein L9 compare
LRK54_RS02855 -2.3 -4.3 type I restriction-modification system subunit M compare
LRK54_RS05550 -2.3 -2.2 FAD-binding protein compare
LRK54_RS12670 -2.2 -8.3 glycosyltransferase compare
LRK54_RS03110 -2.2 -8.6 nucleotidyltransferase family protein compare
LRK54_RS12190 -2.2 -6.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS05655 -2.2 -2.6 ABC transporter permease compare
LRK54_RS01590 -2.2 -8.7 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS01990 -2.2 -14.7 copper resistance system multicopper oxidase conserved
LRK54_RS05650 -2.2 -4.1 ABC transporter ATP-binding protein compare
LRK54_RS10170 -2.2 -17.4 YbaY family lipoprotein compare
LRK54_RS13830 -2.2 -8.0 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS06785 -2.2 -1.5 protein-disulfide reductase DsbD compare
LRK54_RS03895 -2.2 -12.1 lipopolysaccharide biosynthesis protein compare
LRK54_RS11175 -2.1 -6.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS09805 -2.1 -5.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS17905 -2.1 -2.9 NfuA family Fe-S biogenesis protein compare
LRK54_RS07020 -2.1 -2.0 ABC transporter permease compare
LRK54_RS16945 -2.1 -4.8 sigma-E factor negative regulatory protein compare
LRK54_RS15035 -2.1 -5.3 M48 family metalloprotease compare
LRK54_RS08930 -2.0 -5.0 XRE family transcriptional regulator compare
LRK54_RS00680 -2.0 -9.5 TerC family protein compare
LRK54_RS06675 -2.0 -7.5 TetR/AcrR family transcriptional regulator compare
LRK54_RS01595 -2.0 -5.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK54_RS11290 -2.0 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS01600 -2.0 -9.4 histidinol-phosphate transaminase compare
LRK54_RS14800 -2.0 -2.1 cytochrome c compare
LRK54_RS12295 -1.9 -3.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS12300 -1.9 -4.9 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS00085 -1.9 -1.8 tetratricopeptide repeat protein compare
LRK54_RS01605 -1.9 -11.2 histidinol dehydrogenase compare
LRK54_RS05580 -1.9 -4.1 hypothetical protein compare
LRK54_RS08585 -1.9 -14.6 RimK family alpha-L-glutamate ligase compare
LRK54_RS16740 -1.8 -2.0 HU family DNA-binding protein compare
LRK54_RS02380 -1.8 -5.3 argininosuccinate lyase compare
LRK54_RS00690 -1.8 -9.4 2-methylcitrate synthase compare
LRK54_RS06795 -1.8 -5.5 type II 3-dehydroquinate dehydratase compare
LRK54_RS00345 -1.8 -3.6 TraB/GumN family protein compare
LRK54_RS02460 -1.8 -8.2 phosphoglycolate phosphatase compare
LRK54_RS01360 -1.8 -13.7 heavy metal translocating P-type ATPase compare
LRK54_RS06425 -1.8 -2.4 ribonucleoside-diphosphate reductase compare
LRK54_RS05200 -1.8 -3.2 hypothetical protein compare
LRK54_RS05610 -1.8 -7.8 GtrA family protein compare
LRK54_RS12590 -1.8 -10.5 molybdopterin-dependent oxidoreductase compare
LRK54_RS08750 -1.8 -3.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS06495 -1.8 -11.2 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS03405 -1.8 -6.6 ribonuclease G compare
LRK54_RS14460 -1.7 -7.6 septum site-determining protein MinD compare
LRK54_RS05775 -1.7 -8.2 pyruvate kinase compare
LRK54_RS16730 -1.7 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS16720 -1.7 -6.0 trigger factor compare
LRK54_RS17270 -1.7 -3.3 DNA translocase FtsK compare
LRK54_RS16865 -1.7 -7.3 protein phosphatase 2C domain-containing protein compare
LRK54_RS10950 -1.7 -9.5 S41 family peptidase compare
LRK54_RS12460 -1.6 -2.4 hypothetical protein compare
LRK54_RS02335 -1.6 -6.3 FUSC family protein compare
LRK54_RS08760 -1.6 -3.0 transaldolase compare
LRK54_RS16875 -1.6 -12.0 kinase/pyrophosphorylase compare
LRK54_RS12305 -1.6 -8.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS11415 -1.6 -10.2 anthranilate synthase component I compare
LRK54_RS06475 -1.6 -6.0 lipoyl synthase compare
LRK54_RS00775 -1.6 -7.7 translational GTPase TypA compare
LRK54_RS00305 -1.6 -8.7 asparagine synthase B compare
LRK54_RS12595 -1.6 -3.9 (2Fe-2S)-binding protein compare
LRK54_RS04140 -1.5 -5.1 inositol-phosphate phosphatase compare
LRK54_RS05665 -1.5 -3.9 dTDP-glucose 4,6-dehydratase compare
LRK54_RS12580 -1.5 -3.0 hypothetical protein compare
LRK54_RS02185 -1.5 -3.6 exodeoxyribonuclease V subunit alpha compare
LRK54_RS00805 -1.5 -2.9 segregation/condensation protein A compare
LRK54_RS07085 -1.5 -11.4 heme o synthase compare
LRK54_RS04305 -1.5 -2.8 shikimate kinase compare
LRK54_RS13885 -1.5 -2.0 DUF2249 domain-containing protein compare
LRK54_RS17615 -1.5 -10.8 copper resistance system multicopper oxidase conserved
LRK54_RS04710 -1.5 -3.1 glycosyltransferase family 2 protein compare
LRK54_RS02180 -1.5 -6.1 UvrD-helicase domain-containing protein compare
LRK54_RS12625 -1.5 -7.8 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS00080 -1.4 -7.8 helix-turn-helix domain-containing protein compare
LRK54_RS16155 -1.4 -1.2 folate-binding protein compare
LRK54_RS05630 -1.4 -5.1 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS10185 -1.4 -10.7 RDD family protein compare
LRK54_RS18060 -1.4 -4.5 polysaccharide biosynthesis protein compare
LRK54_RS05530 -1.4 -5.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS16950 -1.4 -10.2 Do family serine endopeptidase compare
LRK54_RS12010 -1.4 -6.5 response regulator transcription factor compare
LRK54_RS06610 -1.4 -9.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS17025 -1.4 -1.4 cold-shock protein compare
LRK54_RS16655 -1.4 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS05660 -1.4 -7.2 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS01610 -1.4 -2.2 ATP phosphoribosyltransferase compare
LRK54_RS05615 -1.3 -8.6 hypothetical protein compare
LRK54_RS09155 -1.3 -2.8 SPOR domain-containing protein compare
LRK54_RS10150 -1.3 -1.6 DNA topoisomerase I compare
LRK54_RS01285 -1.3 -4.4 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS05495 -1.3 -3.9 met regulon transcriptional regulator MetJ compare
LRK54_RS17610 -1.3 -6.4 copper resistance protein B compare
LRK54_RS07310 -1.3 -7.0 pteridine reductase compare
LRK54_RS12830 -1.3 -3.7 YeiH family protein compare
LRK54_RS05770 -1.3 -9.4 energy transducer TonB compare
LRK54_RS04995 -1.2 -3.1 LacI family DNA-binding transcriptional regulator compare
LRK54_RS02495 -1.2 -3.9 50S ribosomal protein L19 compare
LRK54_RS05540 -1.2 -3.4 glycosyltransferase family 2 protein compare
LRK54_RS18055 -1.2 -3.8 glycosyltransferase family 4 protein compare
LRK54_RS08670 -1.2 -6.9 LacI family transcriptional regulator compare
LRK54_RS04625 -1.2 -7.4 serine hydroxymethyltransferase compare
LRK54_RS13780 -1.2 -4.5 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS15020 -1.2 -9.0 polyphosphate kinase 1 compare
LRK54_RS02550 -1.2 -2.6 iron-sulfur cluster assembly accessory protein compare
LRK54_RS04630 -1.2 -1.1 energy-dependent translational throttle protein EttA compare
LRK54_RS16600 -1.2 -6.8 aminopeptidase P family protein compare
LRK54_RS02870 -1.2 -4.0 DUF502 domain-containing protein compare
LRK54_RS11385 -1.2 -3.3 co-chaperone DjlA compare
LRK54_RS14845 -1.2 -1.0 LysR family transcriptional regulator compare
LRK54_RS00635 -1.2 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS11775 -1.1 -7.6 ABC transporter substrate-binding protein compare
LRK54_RS05535 -1.1 -4.6 glycosyltransferase family 2 protein compare
LRK54_RS07290 -1.1 -1.4 VanZ family protein compare
LRK54_RS16735 -1.1 -8.4 endopeptidase La compare
LRK54_RS08595 -1.1 -5.4 shikimate dehydrogenase compare
LRK54_RS05735 -1.1 -6.9 maleylacetoacetate isomerase compare
LRK54_RS03675 -1.1 -1.7 redox-regulated ATPase YchF compare
LRK54_RS15935 -1.1 -6.2 rRNA pseudouridine synthase compare
LRK54_RS15165 -1.1 -2.9 enoyl-CoA hydratase-related protein compare
LRK54_RS09655 -1.1 -3.7 6-carboxytetrahydropterin synthase QueD compare
LRK54_RS15095 -1.1 -4.8 ferredoxin family protein compare
LRK54_RS16650 -1.1 -4.0 5'/3'-nucleotidase SurE compare
LRK54_RS00395 -1.1 -2.3 prephenate dehydratase compare
LRK54_RS13675 -1.1 -1.3 methyl-accepting chemotaxis protein compare
LRK54_RS05645 -1.1 -7.9 glycosyltransferase compare
LRK54_RS12855 -1.1 -3.4 PTS fructose transporter subunit IIA compare
LRK54_RS05710 -1.1 -7.5 pyridoxal-phosphate dependent enzyme compare
LRK54_RS02275 -1.1 -3.1 enoyl-CoA hydratase-related protein compare
LRK54_RS00320 -1.1 -2.0 phosphoglycerate mutase compare
LRK54_RS11760 -1.1 -6.6 ATP-binding cassette domain-containing protein compare
LRK54_RS02175 -1.0 -5.5 exodeoxyribonuclease V subunit gamma compare
LRK54_RS01280 -1.0 -1.7 MBL fold metallo-hydrolase compare
LRK54_RS09365 -1.0 -5.9 FecR family protein compare
LRK54_RS02285 -1.0 -7.0 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS07095 -1.0 -6.1 hypothetical protein compare
LRK54_RS11785 -1.0 -7.5 VacJ family lipoprotein compare
LRK54_RS05640 -1.0 -5.3 GDP-mannose 4,6-dehydratase compare
LRK54_RS11770 -1.0 -7.8 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS17895 -1.0 -5.6 RluA family pseudouridine synthase compare


Specific Phenotypes

For 5 genes in this experiment

For stress copper (II) chloride dihydrate in Rhodanobacter denitrificans FW104-10B01

For stress copper (II) chloride dihydrate across organisms