Experiment set2IT041 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Aluminum chloride hydrate 2 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -6.1 -4.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5609 -4.8 -8.6 DNA-binding response regulator ColR compare
Pf6N2E2_3282 -3.9 -4.6 FIG005080: Possible exported protein compare
Pf6N2E2_2129 -3.9 -5.3 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3661 -3.8 -8.0 hypothetical protein compare
Pf6N2E2_5610 -3.6 -7.9 two-component system sensor protein compare
Pf6N2E2_3663 -3.4 -8.5 Glycosyl transferase compare
Pf6N2E2_2985 -3.2 -3.5 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_4187 -3.0 -5.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4352 -2.9 -4.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4162 -2.9 -4.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3659 -2.9 -6.4 Protein fixF compare
Pf6N2E2_3658 -2.5 -10.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_755 -2.5 -13.5 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide conserved
Pf6N2E2_2510 -2.5 -6.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_1086 -2.4 -6.2 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching compare
Pf6N2E2_1056 -2.4 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5527 -2.3 -4.5 Cold shock protein CspC compare
Pf6N2E2_5014 -2.3 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_1626 -2.3 -8.5 Putative ATP-binding component of a transport system compare
Pf6N2E2_4803 -2.2 -2.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3664 -2.2 -9.1 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2823 -2.1 -4.3 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3461 -1.8 -2.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2824 -1.8 -9.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2507 -1.8 -6.4 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2550 -1.8 -13.9 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily conserved
Pf6N2E2_4369 -1.7 -2.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2506 -1.7 -12.2 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4416 -1.7 -3.4 Tyrosine recombinase XerC compare
Pf6N2E2_5617 -1.6 -8.2 Iron-regulated protein A precursor compare
Pf6N2E2_4579 -1.6 -4.0 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4611 -1.6 -3.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_84 -1.5 -3.1 hypothetical protein compare
Pf6N2E2_2729 -1.5 -10.8 membrane protein, putative conserved
Pf6N2E2_2281 -1.5 -2.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3060 -1.5 -3.4 Outer membrane protein H precursor compare
Pf6N2E2_3829 -1.5 -4.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3373 -1.4 -3.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5242 -1.3 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2526 -1.3 -5.7 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4418 -1.3 -1.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5616 -1.3 -4.2 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf6N2E2_3656 -1.3 -6.2 Probable transcription regulator Mig-14 compare
Pf6N2E2_2509 -1.3 -2.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3261 -1.3 -3.2 hypothetical protein compare
Pf6N2E2_5584 -1.2 -3.4 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2200 -1.2 -2.0 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3666 -1.2 -3.1 InaA protein compare
Pf6N2E2_1162 -1.2 -2.0 Transmembrane amino acid efflux protein compare
Pf6N2E2_2756 -1.2 -4.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2825 -1.2 -3.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4556 -1.2 -3.3 FIG00953078: hypothetical protein compare
Pf6N2E2_5618 -1.2 -6.7 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf6N2E2_5111 -1.2 -3.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2746 -1.2 -5.3 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_2508 -1.1 -3.1 hypothetical protein compare
Pf6N2E2_1636 -1.1 -6.2 Ferrichrome-iron receptor compare
Pf6N2E2_3460 -1.1 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2753 -1.1 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_1782 -1.1 -3.1 STAS domain protein compare
Pf6N2E2_1087 -1.1 -6.9 Iron siderophore sensor protein compare
Pf6N2E2_5320 -1.1 -5.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5508 -1.1 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_1617 -1.1 -1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4601 -1.1 -2.5 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2440 -1.0 -1.3 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5346 -1.0 -2.9 rRNA small subunit methyltransferase I compare
Pf6N2E2_6057 -1.0 -2.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_6058 -1.0 -3.6 FIG139976: hypothetical protein compare
Pf6N2E2_4838 -1.0 -6.7 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_5316 -1.0 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2340 -1.0 -3.3 Transcriptional regulator, GntR family compare
Pf6N2E2_3655 -1.0 -7.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5319 -1.0 -6.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_1783 -1.0 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5321 -1.0 -6.0 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_170 -0.9 -2.0 lipoprotein, putative compare
Pf6N2E2_2218 -0.9 -2.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5524 -0.9 -6.9 Outer membrane porin, OprD family compare
Pf6N2E2_4996 -0.9 -2.1 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_5536 -0.9 -1.5 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3351 -0.9 -2.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2045 -0.9 -3.0 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_1875 -0.9 -3.0 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_5013 -0.9 -2.3 Putative membrane protein compare
Pf6N2E2_4305 -0.9 -1.5 FIG00959590: hypothetical protein compare
Pf6N2E2_5318 -0.9 -7.4 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_1074 -0.9 -2.5 FIG00953356: hypothetical protein compare
Pf6N2E2_3472 -0.9 -2.6 Probable short-chain dehydrogenase compare
Pf6N2E2_440 -0.9 -2.8 FIG00954920: hypothetical protein compare
Pf6N2E2_5877 -0.9 -2.0 Phosphohistidine phosphatase SixA compare
Pf6N2E2_2714 -0.9 -1.3 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_2853 -0.9 -5.7 Iron-regulated protein A precursor compare
Pf6N2E2_4809 -0.9 -7.3 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2325 -0.8 -4.0 Recombination protein RecR compare
Pf6N2E2_6095 -0.8 -2.5 tRNA-Asn-GTT compare
Pf6N2E2_2969 -0.8 -5.8 Peptide chain release factor RF-3 conserved
Pf6N2E2_5862 -0.8 -1.9 Lipoprotein, putative compare
Pf6N2E2_1444 -0.8 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_4372 -0.8 -3.5 FIG00460773: hypothetical protein compare
Pf6N2E2_1870 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_6071 -0.8 -3.3 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf6N2E2_6072 -0.8 -5.5 FIG137594: Putative iron-regulated membrane protein compare
Pf6N2E2_3271 -0.8 -2.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4484 -0.8 -6.5 Ferric iron ABC transporter, permease protein compare
Pf6N2E2_4273 -0.8 -4.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_3160 -0.8 -4.4 Multicopper oxidase compare
Pf6N2E2_3183 -0.8 -2.5 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_5317 -0.8 -5.8 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_3516 -0.8 -1.9 Probable transmembrane protein compare
Pf6N2E2_434 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_309 -0.8 -1.7 FIG00957702: hypothetical protein compare
Pf6N2E2_4464 -0.8 -2.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_4810 -0.8 -4.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5716 -0.8 -4.4 Cytochrome c-type biogenesis protein ResA compare
Pf6N2E2_4160 -0.8 -1.3 Cytochrome c5 compare
Pf6N2E2_3713 -0.8 -1.3 Acyl carrier protein compare
Pf6N2E2_724 -0.8 -0.9 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_4483 -0.7 -6.3 Ferric iron ABC transporter, iron-binding protein compare
Pf6N2E2_4477 -0.7 -2.0 Z-ring-associated protein ZapA compare
Pf6N2E2_288 -0.7 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_3406 -0.7 -3.0 putative ABC transporter ATP-binding protein compare
Pf6N2E2_2706 -0.7 -2.4 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_282 -0.7 -1.3 GNAT family acetyltransferase YjcF compare
Pf6N2E2_2717 -0.7 -2.8 putative cytoplasmic protein compare
Pf6N2E2_1298 -0.7 -2.6 Xanthine transporter,putative compare
Pf6N2E2_2124 -0.7 -1.3 Mg(2+) transport ATPase protein C compare
Pf6N2E2_5771 -0.7 -4.2 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_1563 -0.7 -2.3 Transcriptional regulator, AraC family compare
Pf6N2E2_4987 -0.7 -0.7 MaoC-like domain protein compare
Pf6N2E2_6140 -0.7 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_75 -0.7 -2.7 Colicin V production protein compare
Pf6N2E2_1288 -0.7 -2.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_2852 -0.7 -4.4 GGDEF domain/EAL domain protein compare
Pf6N2E2_3095 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_5646 -0.7 -1.1 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5956 -0.7 -3.3 FIG004453: protein YceG like compare
Pf6N2E2_2730 -0.7 -4.6 glutamine synthetase family protein compare
Pf6N2E2_48 -0.7 -2.8 FIG00955661: hypothetical protein compare
Pf6N2E2_2284 -0.7 -1.8 Cell division inhibitor-related protein compare
Pf6N2E2_823 -0.7 -3.2 Outer membrane protein OprN compare
Pf6N2E2_5578 -0.7 -4.5 Ferric iron ABC transporter, ATP-binding protein compare
Pf6N2E2_2940 -0.7 -2.7 OmpA family protein compare
Pf6N2E2_2217 -0.7 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1281 -0.7 -1.6 ATPase involved in DNA repair compare
Pf6N2E2_1034 -0.7 -1.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5955 -0.7 -2.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_3201 -0.7 -2.2 Transcriptional regulator, MerR family compare
Pf6N2E2_3842 -0.7 -2.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2971 -0.7 -5.7 AmpG permease compare
Pf6N2E2_5077 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_1490 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_4659 -0.7 -3.2 Lipoprotein, putative compare
Pf6N2E2_5555 -0.7 -1.3 Cold shock protein CspA compare
Pf6N2E2_1376 -0.7 -2.4 probable transmembrane protein compare
Pf6N2E2_5017 -0.7 -2.7 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf6N2E2_4197 -0.7 -4.5 DNA recombination and repair protein RecF compare
Pf6N2E2_3830 -0.7 -1.8 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_88 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_493 -0.6 -2.2 YD repeat protein compare
Pf6N2E2_579 -0.6 -1.0 FIG00962753: hypothetical protein compare
Pf6N2E2_5677 -0.6 -0.9 Carbon storage regulator compare
Pf6N2E2_218 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_6059 -0.6 -1.7 FIG008443: hypothetical protein compare
Pf6N2E2_5428 -0.6 -2.5 DNA recombination and repair protein RecO compare
Pf6N2E2_2180 -0.6 -1.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_49 -0.6 -2.1 FIG00967200: hypothetical protein compare
Pf6N2E2_3151 -0.6 -2.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3533 -0.6 -2.4 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_3477 -0.6 -1.1 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2219 -0.6 -1.1 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3942 -0.6 -3.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_6046 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_4150 -0.6 -2.7 probable exported protein YPO0432 compare
Pf6N2E2_3017 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_4205 -0.6 -2.3 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2373 -0.6 -0.8 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_2808 -0.6 -3.3 LemA family protein compare
Pf6N2E2_1633 -0.6 -2.2 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_1612 -0.6 -2.6 Phosphonate ABC transporter permease protein phnE1 (TC 3.A.1.9.1) compare
Pf6N2E2_754 -0.6 -1.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5331 -0.6 -2.9 ATPase, AFG1 family compare
Pf6N2E2_350 -0.6 -1.6 Gfa-like protein compare
Pf6N2E2_1450 -0.6 -1.1 FIG00960438: hypothetical protein compare
Pf6N2E2_3607 -0.6 -3.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2727 -0.6 -2.9 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_2586 -0.6 -1.2 Hpt domain protein compare
Pf6N2E2_127 -0.6 -1.1 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1099 -0.6 -1.2 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_2264 -0.6 -2.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5746 -0.6 -1.4 Cobalamin synthase compare
Pf6N2E2_2903 -0.6 -2.5 Heme oxygenase HemO, associated with heme uptake compare
Pf6N2E2_3055 -0.6 -2.2 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_2098 -0.6 -2.4 heme uptake regulator compare
Pf6N2E2_2080 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_3941 -0.6 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3930 -0.6 -4.0 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf6N2E2_629 -0.6 -2.0 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_5252 -0.6 -1.5 FIG00956396: hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Aluminum chloride hydrate across organisms