Experiment set2IT041 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Aluminum chloride hydrate 2 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_5720 +1.6 13.4 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2022 +1.4 8.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_734 +1.3 4.7 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5739 +1.3 1.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_4073 +1.2 7.6 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_2438 +1.2 3.4 hypothetical protein compare
Pf6N2E2_4071 +1.2 6.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4084 +1.2 7.9 Transcriptional regulator compare
Pf6N2E2_1981 +1.1 5.6 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5207 +1.1 3.1 hypothetical protein compare
Pf6N2E2_3875 +1.1 2.7 FIG00953324: hypothetical protein compare
Pf6N2E2_2181 +1.1 2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2967 +1.0 2.0 Cold shock protein CspA compare
Pf6N2E2_4148 +1.0 7.7 Glutamate-aspartate carrier protein compare
Pf6N2E2_3969 +1.0 2.5 Membrane-fusion protein compare
Pf6N2E2_1534 +1.0 2.1 Probable transmembrane protein compare
Pf6N2E2_5370 +1.0 7.2 LysR family transcriptional regulator QseA compare
Pf6N2E2_902 +0.9 1.4 hypothetical protein compare
Pf6N2E2_2223 +0.9 2.9 hypothetical protein compare
Pf6N2E2_482 +0.9 2.5 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_1371 +0.9 3.4 hypothetical protein compare
Pf6N2E2_3505 +0.9 2.1 Translation initiation factor SUI1-related protein compare
Pf6N2E2_942 +0.9 1.7 Mll6465 protein compare
Pf6N2E2_4074 +0.9 6.7 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2403 +0.9 8.2 Pyoverdine chromophore precursor synthetase PvdL compare
Pf6N2E2_5312 +0.9 2.3 FIG00964214: hypothetical protein compare
Pf6N2E2_4075 +0.8 4.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_476 +0.8 2.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2536 +0.8 1.8 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_5226 +0.8 2.3 FIG00955589: hypothetical protein compare
Pf6N2E2_4362 +0.8 2.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4057 +0.8 1.2 lipoprotein, putative compare
Pf6N2E2_6 +0.8 6.0 Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) compare
Pf6N2E2_2012 +0.8 2.5 hypothetical protein compare
Pf6N2E2_3134 +0.8 1.3 hypothetical protein compare
Pf6N2E2_3820 +0.8 1.8 hypothetical protein compare
Pf6N2E2_689 +0.8 2.4 FIG00956189: hypothetical protein compare
Pf6N2E2_731 +0.8 4.4 Respiratory nitrate reductase delta chain (EC 1.7.99.4) compare
Pf6N2E2_5613 +0.8 1.8 FIG00953674: hypothetical protein compare
Pf6N2E2_2405 +0.8 4.0 Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase compare
Pf6N2E2_5780 +0.8 5.5 Periplasmic protease compare
Pf6N2E2_1325 +0.8 2.4 FIG00954773: hypothetical protein compare
Pf6N2E2_3 +0.8 7.0 Non-ribosomal peptide synthetase modules, pyoverdine compare
Pf6N2E2_22 +0.8 5.6 L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis compare
Pf6N2E2_5 +0.8 6.3 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules compare
Pf6N2E2_623 +0.8 1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_4 +0.8 6.5 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules compare
Pf6N2E2_9 +0.8 6.7 Pyoverdine sidechain non-ribosomal peptide synthetase PvdD @ Siderophore biosynthesis non-ribosomal peptide synthetase modules compare
Pf6N2E2_338 +0.7 1.8 Transcriptional regulator, AraC family compare
Pf6N2E2_4615 +0.7 0.8 type IV pili signal transduction protein PilI compare
Pf6N2E2_3198 +0.7 2.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_2447 +0.7 5.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_621 +0.7 4.8 TPR domain protein in aerotolerance operon compare
Pf6N2E2_1095 +0.7 1.2 Opine oxidase subunit C compare
Pf6N2E2_1040 +0.7 1.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3258 +0.7 3.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_3257 +0.7 2.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3696 +0.7 1.1 hypothetical protein compare
Pf6N2E2_3466 +0.7 1.6 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_204 +0.6 0.6 hypothetical protein compare
Pf6N2E2_2792 +0.6 1.9 Antitoxin 1 compare
Pf6N2E2_2477 +0.6 0.8 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_5749 +0.6 1.3 hypothetical protein compare
Pf6N2E2_4984 +0.6 2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2870 +0.6 2.1 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_3362 +0.6 1.7 hypothetical protein compare
Pf6N2E2_2121 +0.6 1.4 hypothetical protein compare
Pf6N2E2_620 +0.6 4.4 BatD compare
Pf6N2E2_2262 +0.6 2.5 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_1033 +0.6 2.4 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_4414 +0.6 3.0 FIG00953808: hypothetical protein compare
Pf6N2E2_2845 +0.6 4.2 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf6N2E2_4128 +0.6 2.6 hypothetical protein compare
Pf6N2E2_5794 +0.6 1.8 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_16 +0.6 1.3 hypothetical protein compare
Pf6N2E2_2471 +0.6 4.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_2578 +0.6 1.3 Flagellar biosynthesis protein FliR compare
Pf6N2E2_5025 +0.6 5.4 Sensor histidine kinase compare
Pf6N2E2_750 +0.6 1.5 Transcriptional regulator, DeoR family compare
Pf6N2E2_4638 +0.6 2.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3009 +0.6 1.5 Phage tail tube protein compare
Pf6N2E2_5455 +0.6 1.5 hypothetical protein compare
Pf6N2E2_5658 +0.6 3.0 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit compare
Pf6N2E2_3338 +0.6 1.1 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2261 +0.6 3.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_5623 +0.6 2.0 YciL protein compare
Pf6N2E2_5178 +0.6 1.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5622 +0.6 2.1 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2404 +0.6 3.2 Sigma factor PvdS, controling pyoverdin biosynthesis compare
Pf6N2E2_2277 +0.6 1.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_2133 +0.6 3.4 Putative sulfate permease compare
Pf6N2E2_4097 +0.6 4.4 FIG00953365: hypothetical protein compare
Pf6N2E2_331 +0.6 1.8 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_92 +0.6 1.5 hypothetical protein compare
Pf6N2E2_5876 +0.6 1.9 Lipase (EC 3.1.1.3) compare
Pf6N2E2_1173 +0.6 1.3 hypothetical protein compare
Pf6N2E2_3260 +0.6 2.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_831 +0.6 1.7 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_15 +0.6 2.6 Pyoverdine biosynthesis related protein PvdP compare
Pf6N2E2_1032 +0.5 0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1211 +0.5 1.5 Lactoylglutathione lyase compare
Pf6N2E2_2352 +0.5 1.6 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_4990 +0.5 2.6 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_1273 +0.5 2.0 Probable RND efflux membrane fusion protein compare
Pf6N2E2_3632 +0.5 3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2474 +0.5 3.6 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_1508 +0.5 1.8 DNA-binding response regulator compare
Pf6N2E2_3612 +0.5 1.1 HflK protein compare
Pf6N2E2_3553 +0.5 3.0 Urease (EC 3.5.1.5) (from data) compare
Pf6N2E2_4054 +0.5 1.0 Osmotically inducible protein C compare
Pf6N2E2_6090 +0.5 1.2 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_733 +0.5 1.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_2161 +0.5 2.5 Conserved domain protein compare
Pf6N2E2_1994 +0.5 1.7 putative lipoprotein compare
Pf6N2E2_1499 +0.5 1.3 ABC transporter amino acid-binding protein compare
Pf6N2E2_495 +0.5 1.6 YD repeat protein compare
Pf6N2E2_4963 +0.5 1.3 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_1128 +0.5 1.2 Two-component response regulator compare
Pf6N2E2_1673 +0.5 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2728 +0.5 3.1 SAM-dependent methyltransferases compare
Pf6N2E2_2225 +0.5 1.6 FIG00953489: hypothetical protein compare
Pf6N2E2_529 +0.5 3.0 FIG00954439: hypothetical protein compare
Pf6N2E2_4640 +0.5 1.1 hypothetical protein compare
Pf6N2E2_5251 +0.5 1.6 FIG00954698: hypothetical protein compare
Pf6N2E2_254 +0.5 1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_161 +0.5 2.1 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_6070 +0.5 1.9 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_1683 +0.5 1.5 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_4591 +0.5 3.1 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_1652 +0.5 0.9 Transcriptional regulator, TetR family compare
Pf6N2E2_2088 +0.5 1.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_466 +0.5 2.0 Nicotinamidase (EC 3.5.1.19) compare
Pf6N2E2_3825 +0.5 1.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3382 +0.5 2.6 Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF compare
Pf6N2E2_4496 +0.5 2.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_570 +0.5 1.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf6N2E2_1106 +0.5 2.2 Chromosome initiation inhibitor compare
Pf6N2E2_1424 +0.5 1.0 transcriptional regulator, TetR family compare
Pf6N2E2_5714 +0.5 1.6 Flavoprotein WrbA compare
Pf6N2E2_2617 +0.5 2.9 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
Pf6N2E2_4169 +0.5 2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4364 +0.5 1.5 Protein YicC compare
Pf6N2E2_420 +0.5 1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5502 +0.5 2.7 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases compare
Pf6N2E2_937 +0.5 3.0 Short-chain dehydrodenase (gene dltE) compare
Pf6N2E2_3737 +0.5 1.4 General secretion pathway protein M compare
Pf6N2E2_719 +0.5 1.1 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_563 +0.5 2.8 Serine transporter compare
Pf6N2E2_4359 +0.5 1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2970 +0.5 2.0 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_5468 +0.5 2.0 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_1596 +0.5 1.1 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_625 +0.5 2.4 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4067 +0.5 3.1 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_6047 +0.5 1.1 hypothetical protein compare
Pf6N2E2_5816 +0.5 0.8 Smr domain protein compare
Pf6N2E2_1975 +0.5 1.4 Integrase regulator R compare
Pf6N2E2_4661 +0.5 1.4 KluA regulatory protein compare
Pf6N2E2_3077 +0.5 1.3 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_2394 +0.5 2.0 FIG006220: Hypothetical MbtH-like protein compare
Pf6N2E2_5510 +0.5 0.8 FIG00955324: hypothetical protein compare
Pf6N2E2_2620 +0.4 2.6 O-antigen biosynthesis protein compare
Pf6N2E2_5576 +0.4 1.1 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_5666 +0.4 3.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4706 +0.4 1.0 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3947 +0.4 1.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_1083 +0.4 1.1 hypothetical protein compare
Pf6N2E2_1582 +0.4 1.6 HlyD family secretion protein compare
Pf6N2E2_5611 +0.4 3.0 SAM-dependent methyltransferases compare
Pf6N2E2_2207 +0.4 1.8 cytochrome b(561) compare
Pf6N2E2_3761 +0.4 4.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_414 +0.4 1.8 Chemotaxis protein CheD compare
Pf6N2E2_2988 +0.4 2.3 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_1567 +0.4 1.7 FIG00964846: hypothetical protein compare
Pf6N2E2_3902 +0.4 1.7 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_3876 +0.4 1.9 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_841 +0.4 1.3 hypothetical protein compare
Pf6N2E2_5706 +0.4 2.1 Transcriptional regulator, AraC family compare
Pf6N2E2_1916 +0.4 1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_3721 +0.4 2.8 FIG021862: membrane protein, exporter compare
Pf6N2E2_728 +0.4 1.0 Nitrate/nitrite transporter compare
Pf6N2E2_1139 +0.4 2.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf6N2E2_2588 +0.4 0.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1546 +0.4 2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_2637 +0.4 2.8 Metal-dependent phosphohydrolase, HD subdomain compare
Pf6N2E2_1185 +0.4 2.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4915 +0.4 1.9 FIG000875: Thioredoxin domain-containing protein EC-YbbN compare
Pf6N2E2_1124 +0.4 1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5088 +0.4 1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3122 +0.4 0.8 Chemotaxis signal transduction protein compare
Pf6N2E2_4086 +0.4 3.6 sodium/alanine transporter compare
Pf6N2E2_4547 +0.4 2.7 Type III secretion cytoplasmic protein (YscL) compare
Pf6N2E2_3718 +0.4 3.4 Putative histidine ammonia-lyase protein compare
Pf6N2E2_3790 +0.4 2.0 hypothetical protein compare
Pf6N2E2_1656 +0.4 0.6 hypothetical protein compare
Pf6N2E2_242 +0.4 2.2 Glycine betaine ABC transport system permease protein compare
Pf6N2E2_1379 +0.4 1.8 Sensory box histidine kinase/response regulator compare
Pf6N2E2_5024 +0.4 0.9 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_5044 +0.4 0.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_6060 +0.4 1.4 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare


Specific Phenotypes

For 6 genes in this experiment

For stress Aluminum chloride hydrate in Pseudomonas fluorescens FW300-N2E2

For stress Aluminum chloride hydrate across organisms