Experiment set2IT041 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_578 -1.9 -3.5 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1307 -1.7 -2.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_4335 -1.6 -2.9 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_1570 -1.6 -3.8 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_2021 -1.5 -2.9 hypothetical protein compare
Pf1N1B4_5219 -1.5 -2.4 tRNA-Gly-CCC compare
Pf1N1B4_1568 -1.4 -3.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_4040 -1.4 -2.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1105 -1.4 -2.6 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_1403 -1.4 -6.5 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4028 -1.4 -3.8 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_5446 -1.4 -3.8 hypothetical protein compare
Pf1N1B4_769 -1.3 -6.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_2878 -1.3 -7.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_5659 -1.3 -8.2 NfuA Fe-S protein maturation compare
Pf1N1B4_4740 -1.3 -1.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_126 -1.3 -2.4 Pirin compare
Pf1N1B4_1115 -1.3 -7.9 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_2384 -1.3 -8.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_3591 -1.2 -6.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_5675 -1.2 -2.6 hypothetical protein compare
Pf1N1B4_3917 -1.2 -3.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_538 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_6036 -1.2 -2.4 FIG00953132: hypothetical protein compare
Pf1N1B4_2736 -1.2 -2.6 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_2401 -1.1 -2.0 Lipoprotein, putative compare
Pf1N1B4_1402 -1.1 -2.9 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_2209 -1.1 -5.8 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1234 -1.1 -3.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2912 -1.1 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_1613 -1.1 -2.7 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_1116 -1.1 -7.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_2004 -1.1 -1.6 putative membrane protein compare
Pf1N1B4_4611 -1.1 -2.6 GlpG protein (membrane protein of glp regulon) compare
Pf1N1B4_4029 -1.1 -2.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_327 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_652 -1.1 -6.9 Sensory box histidine kinase compare
Pf1N1B4_1003 -1.1 -2.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3909 -1.1 -2.1 Cell division inhibitor-related protein compare
Pf1N1B4_1617 -1.0 -5.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1906 -1.0 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3241 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_65 -1.0 -4.6 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_412 -1.0 -1.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_2851 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_5146 -1.0 -2.1 Chromosome initiation inhibitor compare
Pf1N1B4_656 -1.0 -5.5 Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) compare
Pf1N1B4_2412 -1.0 -2.8 ATP-dependent 23S rRNA helicase DbpA compare
Pf1N1B4_4295 -1.0 -2.2 FIG00954434: hypothetical protein compare
Pf1N1B4_5777 -1.0 -2.2 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_3222 -1.0 -1.7 Ferredoxin compare
Pf1N1B4_4518 -1.0 -2.0 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_1569 -1.0 -7.2 Twin-arginine translocation protein TatC compare
Pf1N1B4_4866 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_4257 -0.9 -1.8 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2858 -0.9 -6.8 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4571 -0.9 -2.9 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_4030 -0.9 -1.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4051 -0.9 -3.1 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_1565 -0.9 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3456 -0.9 -3.4 ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8) compare
Pf1N1B4_5519 -0.9 -2.7 hypothetical protein compare
Pf1N1B4_5624 -0.9 -1.9 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_1830 -0.9 -5.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_5814 -0.9 -2.2 putative membrane protein compare
Pf1N1B4_1462 -0.9 -6.9 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_72 -0.9 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_5043 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_3869 -0.9 -6.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_3279 -0.9 -2.1 putative membrane protein compare
Pf1N1B4_3590 -0.9 -3.4 hypothetical protein compare
Pf1N1B4_4964 -0.9 -2.3 Tricarboxylate transport protein TctB compare
Pf1N1B4_3833 -0.9 -4.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5797 -0.9 -1.7 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_3217 -0.9 -2.6 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Pf1N1B4_1315 -0.9 -4.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3665 -0.8 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_5512 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_479 -0.8 -2.4 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_886 -0.8 -1.9 FIG137478: Hypothetical protein compare
Pf1N1B4_4593 -0.8 -2.1 ABC transporter, periplasmic substrate-binding protein compare
Pf1N1B4_3006 -0.8 -3.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_2390 -0.8 -2.5 probable membrane protein NMA1176 compare
Pf1N1B4_5556 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_348 -0.8 -2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_5258 -0.8 -3.2 hypothetical protein compare
Pf1N1B4_3812 -0.8 -4.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_3508 -0.8 -2.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_6037 -0.8 -2.3 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_4118 -0.8 -2.2 Cyn operon transcriptional activator compare
Pf1N1B4_4123 -0.8 -1.7 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_876 -0.8 -2.7 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_3991 -0.8 -1.4 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_5898 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_1388 -0.8 -1.7 Azurin compare
Pf1N1B4_1247 -0.8 -2.2 transcriptional regulator, MerR family compare
Pf1N1B4_4979 -0.8 -2.1 Transcriptional regulator, AsnC family compare
Pf1N1B4_1886 -0.8 -3.2 FIG00956005: hypothetical protein compare
Pf1N1B4_2035 -0.8 -3.2 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_2421 -0.8 -2.0 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_2958 -0.8 -1.5 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_5829 -0.8 -1.9 FIG005107: hypothetical protein compare
Pf1N1B4_5682 -0.8 -1.8 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_5747 -0.8 -1.7 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_1812 -0.8 -2.0 Iron siderophore sensor protein compare
Pf1N1B4_5073 -0.8 -2.3 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf1N1B4_4193 -0.8 -2.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_2856 -0.8 -2.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3081 -0.8 -7.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_4401 -0.8 -2.3 Non-heme chloroperoxidase (EC 1.11.1.10) compare
Pf1N1B4_2879 -0.8 -4.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_236 -0.8 -2.1 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_4857 -0.8 -3.5 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2853 -0.8 -1.6 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_5767 -0.8 -3.3 Heme d1 biosynthesis protein NirF compare
Pf1N1B4_5684 -0.8 -2.6 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_4038 -0.8 -1.8 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_3881 -0.8 -4.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_5799 -0.8 -2.1 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf1N1B4_3519 -0.8 -2.7 Lipase (EC 3.1.1.3) compare
Pf1N1B4_1252 -0.8 -2.5 Adenosine deaminase (EC 3.5.4.4) compare
Pf1N1B4_5644 -0.8 -2.4 amino acid ABC transporter, permease protein compare
Pf1N1B4_525 -0.8 -2.3 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_4759 -0.8 -1.4 Proteinase inhibitor I11, ecotin precursor compare
Pf1N1B4_3911 -0.8 -2.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_2859 -0.8 -6.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_379 -0.8 -2.6 Protein of unknown function UPF0060 compare
Pf1N1B4_5013 -0.8 -1.8 Cointegrate resolution protein T compare
Pf1N1B4_962 -0.7 -4.7 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_5768 -0.7 -2.0 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_3700 -0.7 -2.4 Putative permease often clustered with de novo purine synthesis compare
Pf1N1B4_2228 -0.7 -2.6 FIG001590: Putative conserved exported protein precursor compare
Pf1N1B4_5508 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_3537 -0.7 -2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_3870 -0.7 -6.1 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_4418 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_2487 -0.7 -4.7 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1236 -0.7 -3.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_4505 -0.7 -1.8 Coenzyme PQQ synthesis protein E compare
Pf1N1B4_5575 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_1511 -0.7 -1.4 FIG027190: Putative transmembrane protein compare
Pf1N1B4_1566 -0.7 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_93 -0.7 -1.9 Phenazine biosynthesis protein PhzF like compare
Pf1N1B4_3143 -0.7 -1.8 RecA protein compare
Pf1N1B4_1042 -0.7 -2.0 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_5371 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_3906 -0.7 -2.2 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_5584 -0.7 -2.0 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_1986 -0.7 -3.2 Carbonic anhydrase, gamma class (EC 4.2.1.1) compare
Pf1N1B4_4627 -0.7 -1.5 FIG00957600: hypothetical protein compare
Pf1N1B4_5284 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_5106 -0.7 -2.2 Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein compare
Pf1N1B4_446 -0.7 -2.2 Thymidylate kinase (EC 2.7.4.9) compare
Pf1N1B4_901 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_4041 -0.7 -2.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_3849 -0.7 -2.5 Transcriptional regulator, GntR family compare
Pf1N1B4_188 -0.7 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_5720 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_5620 -0.7 -1.2 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_4570 -0.7 -2.1 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_4425 -0.7 -2.0 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf1N1B4_3005 -0.7 -4.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_3025 -0.7 -2.2 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_3212 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_1458 -0.7 -3.6 Probable transcription regulator Mig-14 compare
Pf1N1B4_3887 -0.7 -1.7 CAAX amino terminal protease family protein compare
Pf1N1B4_2163 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_5383 -0.7 -4.6 hypothetical protein compare
Pf1N1B4_3970 -0.7 -2.7 Ferredoxin reductase compare
Pf1N1B4_2283 -0.7 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_2105 -0.7 -1.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2526 -0.7 -5.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_358 -0.7 -3.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_4699 -0.7 -0.9 Multidrug translocase MdfA compare
Pf1N1B4_1235 -0.7 -3.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_4797 -0.7 -1.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_751 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_4299 -0.7 -2.1 sensor histidine kinase compare
Pf1N1B4_1475 -0.7 -2.3 FIG00962376: hypothetical protein compare
Pf1N1B4_1057 -0.7 -1.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3871 -0.7 -5.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1936 -0.7 -3.2 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_1878 -0.7 -4.3 Cytochrome c4 compare
Pf1N1B4_5688 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_1069 -0.7 -2.9 YrbA protein compare
Pf1N1B4_2477 -0.7 -1.9 response regulator compare
Pf1N1B4_835 -0.7 -1.8 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_2318 -0.7 -2.7 FIG229276: Transcriptional regulator, AraC family compare
Pf1N1B4_69 -0.7 -1.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4551 -0.7 -1.3 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_960 -0.7 -4.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_618 -0.7 -2.7 Acetyl-CoA carboxylase alpha subunit compare
Pf1N1B4_5426 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_2145 -0.7 -0.9 Translation initiation inhibitor compare
Pf1N1B4_3341 -0.7 -2.4 Cyanate transport protein CynX compare
Pf1N1B4_1317 -0.7 -1.4 Sensor histidine kinase/response regulator compare
Pf1N1B4_10 -0.7 -2.0 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf1N1B4_3141 -0.7 -1.2 FIG00959768: hypothetical protein compare
Pf1N1B4_5706 -0.6 -1.9 Fumarylacetoacetate hydrolase family protein compare
Pf1N1B4_3134 -0.6 -1.1 probable tail fiber assembly-like protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments