Experiment set2IT041 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_5926 +3.3 17.6 hypothetical protein compare
Pf1N1B4_5925 +3.2 17.0 hypothetical protein compare
Pf1N1B4_2381 +3.0 16.4 Protein yceI precursor compare
Pf1N1B4_2380 +2.9 18.7 Cytochrome B561 compare
Pf1N1B4_5924 +2.4 10.6 hypothetical protein compare
Pf1N1B4_5927 +1.6 13.7 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_3129 +1.6 2.4 Prophage baseplate assembly protein V compare
Pf1N1B4_3078 +1.3 2.4 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_4799 +1.3 2.4 Multidrug resistance protein B compare
Pf1N1B4_3588 +1.3 3.1 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_4830 +1.3 2.0 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_1430 +1.2 2.2 Predicted signal transduction protein compare
Pf1N1B4_1584 +1.2 1.5 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_138 +1.2 1.9 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_3501 +1.2 4.6 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_5619 +1.2 3.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_909 +1.1 2.4 Ketosteroid isomerase-related protein compare
Pf1N1B4_4826 +1.1 1.9 glutamine synthetase family protein compare
Pf1N1B4_1266 +1.1 3.2 hypothetical protein compare
Pf1N1B4_539 +1.1 2.1 Transcriptional regulators compare
Pf1N1B4_3927 +1.1 1.7 hypothetical protein compare
Pf1N1B4_4358 +1.0 2.0 Acetyltransferase, GNAT family compare
Pf1N1B4_4870 +1.0 1.4 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_240 +1.0 1.8 Transcriptional regulators compare
Pf1N1B4_4462 +1.0 1.9 LysR family transcriptional regulator YbhD compare
Pf1N1B4_4043 +1.0 2.5 Type II and III secretion system family protein compare
Pf1N1B4_1675 +0.9 2.5 Transcriptional regulator compare
Pf1N1B4_5239 +0.9 2.3 hypothetical protein compare
Pf1N1B4_4921 +0.9 2.3 Haloacid dehalogenase, type II compare
Pf1N1B4_3111 +0.9 1.9 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_5005 +0.9 1.7 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_483 +0.9 2.0 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_3786 +0.9 2.7 FIG00955145: hypothetical protein compare
Pf1N1B4_5725 +0.9 1.6 High-affinity iron permease compare
Pf1N1B4_561 +0.9 2.2 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_4435 +0.9 3.1 Inner membrane protein compare
Pf1N1B4_1135 +0.9 2.1 FIG00960055: hypothetical protein compare
Pf1N1B4_1358 +0.9 2.0 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_5242 +0.9 1.8 hypothetical protein compare
Pf1N1B4_1008 +0.9 1.0 FIG006045: Sigma factor, ECF subfamily compare
Pf1N1B4_4004 +0.9 1.8 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_4108 +0.9 1.7 Hydrolase, alpha/beta fold family compare
Pf1N1B4_339 +0.9 1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_5435 +0.8 2.4 hypothetical protein compare
Pf1N1B4_4846 +0.8 2.6 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf1N1B4_4731 +0.8 2.2 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1482 +0.8 2.3 hypothetical protein compare
Pf1N1B4_4822 +0.8 1.7 Paraquat-inducible protein A compare
Pf1N1B4_4103 +0.8 1.7 Flagellar synthesis regulator FleN compare
Pf1N1B4_5823 +0.8 1.5 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_88 +0.8 2.2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_5912 +0.8 2.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2102 +0.8 1.6 hypothetical protein compare
Pf1N1B4_3546 +0.8 1.9 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_4824 +0.8 1.7 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_611 +0.8 1.3 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_5634 +0.8 2.8 Acetoacetyl-CoA synthetase (EC 6.2.1.16) compare
Pf1N1B4_2640 +0.8 2.4 FIG003461: hypothetical protein compare
Pf1N1B4_4320 +0.8 2.3 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_4751 +0.8 2.2 Ku domain protein compare
Pf1N1B4_3578 +0.8 2.4 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf1N1B4_3966 +0.8 2.0 serine/threonine protein kinase compare
Pf1N1B4_4459 +0.8 2.0 Thermostable hemolysin delta-VPH compare
Pf1N1B4_5611 +0.8 1.9 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_2067 +0.8 2.5 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_4455 +0.8 1.3 FIG00953528: hypothetical protein compare
Pf1N1B4_5095 +0.8 1.7 hypothetical protein compare
Pf1N1B4_5666 +0.8 1.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_3549 +0.8 1.4 YciL protein compare
Pf1N1B4_6034 +0.8 3.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
Pf1N1B4_3764 +0.7 1.7 Allantoicase (EC 3.5.3.4) compare
Pf1N1B4_3191 +0.7 1.6 FIG00953505: hypothetical protein compare
Pf1N1B4_5835 +0.7 2.0 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_1339 +0.7 2.0 ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component compare
Pf1N1B4_1228 +0.7 2.3 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) compare
Pf1N1B4_765 +0.7 1.8 Cys-tRNA(Pro) deacylase YbaK compare
Pf1N1B4_3130 +0.7 2.3 Bacteriophage protein GP46 compare
Pf1N1B4_5711 +0.7 2.1 Salicylate hydroxylase (EC 1.14.13.1) compare
Pf1N1B4_814 +0.7 1.6 Transcriptional regulator, PadR family compare
Pf1N1B4_338 +0.7 1.4 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_3368 +0.7 1.2 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_1154 +0.7 2.2 FIG00957702: hypothetical protein compare
Pf1N1B4_5957 +0.7 1.6 Arsenical resistance operon repressor compare
Pf1N1B4_5306 +0.7 1.5 hypothetical protein compare
Pf1N1B4_3407 +0.7 2.4 Sterol desaturase, putative compare
Pf1N1B4_2713 +0.7 1.9 FIG00955339: hypothetical protein compare
Pf1N1B4_4946 +0.7 1.9 putative aminotransferase compare
Pf1N1B4_5078 +0.7 1.7 Transcriptional regulator PhnF compare
Pf1N1B4_4192 +0.7 1.8 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_4024 +0.7 1.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3499 +0.7 0.8 hypothetical protein compare
Pf1N1B4_4515 +0.7 2.1 Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) compare
Pf1N1B4_3056 +0.7 2.2 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_5965 +0.7 2.3 D-amino-acid oxidase (EC 1.4.3.3) compare
Pf1N1B4_3446 +0.7 1.3 Putative GTPases (G3E family) compare
Pf1N1B4_2621 +0.7 1.5 PspA/IM30 family protein compare
Pf1N1B4_3149 +0.7 2.3 hypothetical protein compare
Pf1N1B4_4558 +0.7 1.8 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_128 +0.7 1.8 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_2733 +0.7 1.4 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_4516 +0.7 1.1 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_2731 +0.7 1.9 Uncharacterized protein conserved in bacteria compare
Pf1N1B4_4132 +0.7 1.2 Mobile element protein compare
Pf1N1B4_5801 +0.7 1.8 hypothetical protein compare
Pf1N1B4_2635 +0.7 1.2 hypothetical protein compare
Pf1N1B4_5040 +0.7 1.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_3408 +0.7 1.1 Transcriptional regulator, AraC family compare
Pf1N1B4_4438 +0.6 1.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_2415 +0.6 2.6 TldD family protein, Beta/Gamma-proteobacterial subgroup compare
Pf1N1B4_2297 +0.6 2.1 FIG00954147: hypothetical protein compare
Pf1N1B4_4604 +0.6 1.6 FMN reductase, NADPH-dependent compare
Pf1N1B4_883 +0.6 1.2 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_4972 +0.6 1.3 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_1280 +0.6 2.9 Type II/IV secretion system protein TadC, associated with Flp pilus assembly compare
Pf1N1B4_4478 +0.6 0.9 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_4423 +0.6 1.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_224 +0.6 1.6 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_4202 +0.6 2.4 4-oxalmesaconate hydratase (EC 4.2.1.83) compare
Pf1N1B4_3253 +0.6 1.6 Acyl carrier protein phosphodiesterase (EC 3.1.4.14) compare
Pf1N1B4_4422 +0.6 1.0 ABC transporter amino acid-binding protein compare
Pf1N1B4_5289 +0.6 1.4 hypothetical protein compare
Pf1N1B4_1461 +0.6 2.0 Protein fixF compare
Pf1N1B4_1282 +0.6 1.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2763 +0.6 1.6 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) compare
Pf1N1B4_2823 +0.6 1.2 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_5349 +0.6 1.7 hypothetical protein compare
Pf1N1B4_4755 +0.6 1.5 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_3926 +0.6 1.6 membrane protein, putative compare
Pf1N1B4_4154 +0.6 1.5 Transcriptional regulator, AraC family compare
Pf1N1B4_4001 +0.6 1.0 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_675 +0.6 1.7 hypothetical protein compare
Pf1N1B4_309 +0.6 2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4711 +0.6 2.0 hypothetical protein compare
Pf1N1B4_1837 +0.6 0.9 Osmotically inducible protein C compare
Pf1N1B4_114 +0.6 1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_5817 +0.6 1.4 Decarboxylase family protein compare
Pf1N1B4_3235 +0.6 2.2 Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) compare
Pf1N1B4_576 +0.6 2.3 hypothetical protein compare
Pf1N1B4_218 +0.6 3.6 Periplasmic binding protein compare
Pf1N1B4_4835 +0.6 1.1 Carbon starvation protein A compare
Pf1N1B4_3435 +0.6 1.3 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_2714 +0.6 2.1 FOG: TPR repeat, SEL1 subfamily compare
Pf1N1B4_4928 +0.6 2.7 Ferredoxin reductase compare
Pf1N1B4_1312 +0.6 2.1 hypothetical protein compare
Pf1N1B4_3044 +0.6 1.8 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_516 +0.6 1.3 Sensor histidine kinase compare
Pf1N1B4_5533 +0.6 1.8 cobS protein, putative compare
Pf1N1B4_3751 +0.6 0.8 FIG00953060: hypothetical protein compare
Pf1N1B4_2783 +0.6 1.3 Transcription elongation factor GreB-related protein compare
Pf1N1B4_1731 +0.6 3.4 Sensory box/GGDEF family protein compare
Pf1N1B4_5705 +0.6 2.2 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
Pf1N1B4_121 +0.6 1.9 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_3672 +0.6 2.3 small component of pyruvate transporter (yjcH-like) (from data) compare
Pf1N1B4_4110 +0.6 1.2 hypothetical protein compare
Pf1N1B4_2284 +0.6 2.2 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_5353 +0.6 2.2 hypothetical protein compare
Pf1N1B4_629 +0.6 1.1 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_1246 +0.6 1.2 FIG00954047: hypothetical protein compare
Pf1N1B4_3381 +0.6 2.6 Y4mH compare
Pf1N1B4_4814 +0.6 1.0 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_373 +0.5 1.5 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_2964 +0.5 2.2 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_548 +0.5 2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_855 +0.5 1.4 FIG021952: putative membrane protein compare
Pf1N1B4_2828 +0.5 2.1 FIG00953333: hypothetical protein compare
Pf1N1B4_4488 +0.5 1.9 Sensory box histidine kinase/response regulator compare
Pf1N1B4_3858 +0.5 1.7 FIG00954563: hypothetical protein compare
Pf1N1B4_1697 +0.5 2.4 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme compare
Pf1N1B4_324 +0.5 1.1 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4784 +0.5 1.9 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases compare
Pf1N1B4_164 +0.5 1.2 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_3525 +0.5 0.9 hydrolase, alpha/beta fold family compare
Pf1N1B4_1975 +0.5 1.2 Transcriptional regulator, AsnC family compare
Pf1N1B4_3098 +0.5 1.7 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_999 +0.5 2.1 Na+-dependent transporters of the SNF family compare
Pf1N1B4_5357 +0.5 0.7 hypothetical protein compare
Pf1N1B4_4999 +0.5 1.4 Sugar diacid utilization regulator SdaR compare
Pf1N1B4_4139 +0.5 0.8 Transcriptional regulator, MerR family compare
Pf1N1B4_439 +0.5 2.1 hypothetical protein compare
Pf1N1B4_3530 +0.5 2.0 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf1N1B4_120 +0.5 2.2 Channel-forming transporter/cytolysins activator of TpsB family compare
Pf1N1B4_4904 +0.5 2.3 Serine protease homologue compare
Pf1N1B4_899 +0.5 1.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_5640 +0.5 1.6 Transcriptional regulator, IclR family compare
Pf1N1B4_5695 +0.5 1.4 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_2366 +0.5 1.3 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_1347 +0.5 2.1 Urea ABC transporter, ATPase protein UrtE compare
Pf1N1B4_3382 +0.5 1.7 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
Pf1N1B4_3610 +0.5 2.4 Serine phosphatase RsbU, regulator of sigma subunit compare
Pf1N1B4_2060 +0.5 1.4 hypothetical protein compare
Pf1N1B4_18 +0.5 2.2 16 kDa heat shock protein A compare
Pf1N1B4_3962 +0.5 2.4 Glycerol-3-phosphate transporter compare
Pf1N1B4_4772 +0.5 2.1 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_748 +0.5 1.9 hypothetical protein compare
Pf1N1B4_2983 +0.5 1.4 hypothetical protein compare
Pf1N1B4_4352 +0.5 1.1 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_5812 +0.5 1.4 FIG00955248: hypothetical protein compare
Pf1N1B4_3744 +0.5 1.7 ABC transporter, ATP-binding protein compare
Pf1N1B4_4725 +0.5 1.4 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_31 +0.5 1.7 Probable Co/Zn/Cd efflux system membrane fusion protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in lb experiments