Experiment set2IT041 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS18495 +1.2 2.2 hypothetical protein compare
CA265_RS22010 +0.8 1.9 hypothetical protein compare
CA265_RS02795 +0.8 2.1 hypothetical protein compare
CA265_RS21395 +0.8 1.6 hypothetical protein compare
CA265_RS17025 +0.8 2.4 hypothetical protein compare
CA265_RS23545 +0.8 1.4 NADH dehydrogenase subunit D compare
CA265_RS13500 +0.7 2.7 hypothetical protein compare
CA265_RS05985 +0.7 1.3 hypothetical protein compare
CA265_RS06405 +0.6 1.5 hypothetical protein compare
CA265_RS11030 +0.6 1.3 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS10235 +0.6 1.6 hypothetical protein compare
CA265_RS16270 +0.6 3.3 hypothetical protein compare
CA265_RS20095 +0.6 1.9 NADH oxidase compare
CA265_RS10000 +0.6 1.9 nitrite reductase small subunit compare
CA265_RS03495 +0.6 1.5 cytochrome c biogenesis protein compare
CA265_RS09705 +0.6 2.3 copper oxidase compare
CA265_RS16785 +0.6 1.2 50S ribosomal protein L17 compare
CA265_RS08315 +0.6 1.1 tRNA-Lys compare
CA265_RS08570 +0.6 1.9 dehydratase compare
CA265_RS24995 +0.5 3.2 hypothetical protein compare
CA265_RS05575 +0.5 1.6 hypothetical protein compare
CA265_RS16995 +0.5 2.2 hypothetical protein compare
CA265_RS23250 +0.5 2.0 hypothetical protein compare
CA265_RS04445 +0.5 1.9 hypothetical protein compare
CA265_RS02110 +0.5 1.8 hypothetical protein compare
CA265_RS20315 +0.5 4.2 hypothetical protein compare
CA265_RS18270 +0.5 1.3 hypothetical protein compare
CA265_RS22165 +0.5 1.1 hypothetical protein compare
CA265_RS24960 +0.5 2.8 hypothetical protein compare
CA265_RS19860 +0.5 2.3 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS22210 +0.5 1.9 hypothetical protein compare
CA265_RS09650 +0.5 1.6 diaminopimelate decarboxylase compare
CA265_RS12985 +0.5 1.2 hypothetical protein compare
CA265_RS13240 +0.5 1.6 preprotein translocase subunit YajC compare
CA265_RS02425 +0.5 1.5 GTP cyclohydrolase compare
CA265_RS13085 +0.5 2.7 osmotically inducible protein OsmC compare
CA265_RS04560 +0.5 1.1 hypothetical protein compare
CA265_RS22895 +0.5 2.1 aminodeoxychorismate/anthranilate synthase component II compare
CA265_RS02315 +0.5 2.7 single-stranded DNA-binding protein compare
CA265_RS12330 +0.5 1.8 response regulator compare
CA265_RS21080 +0.5 1.4 hypothetical protein compare
CA265_RS04425 +0.5 1.7 histidine phosphotransferase compare
CA265_RS19405 +0.5 2.2 transcriptional regulator compare
CA265_RS12950 +0.4 2.4 hypothetical protein compare
CA265_RS12665 +0.4 0.9 cold-shock protein compare
CA265_RS21470 +0.4 1.9 elongation factor P compare
CA265_RS19690 +0.4 2.6 hypothetical protein compare
CA265_RS07230 +0.4 1.1 hypothetical protein compare
CA265_RS24445 +0.4 1.4 hypothetical protein compare
CA265_RS01220 +0.4 1.4 hypothetical protein compare
CA265_RS17565 +0.4 2.0 hypothetical protein compare
CA265_RS23925 +0.4 1.7 endonuclease compare
CA265_RS02230 +0.4 2.5 hypothetical protein compare
CA265_RS11975 +0.4 1.5 hypothetical protein compare
CA265_RS25315 +0.4 2.4 phytoene dehydrogenase compare
CA265_RS20320 +0.4 3.8 hypothetical protein compare
CA265_RS18145 +0.4 2.3 hypothetical protein compare
CA265_RS24955 +0.4 1.4 methyltransferase type 11 compare
CA265_RS09900 +0.4 3.2 TetR family transcriptional regulator compare
CA265_RS01200 +0.4 2.3 hypothetical protein compare
CA265_RS18945 +0.4 2.3 LacI family transcriptional regulator compare
CA265_RS23090 +0.4 1.9 transcriptional regulator compare
CA265_RS06505 +0.4 1.3 hypothetical protein compare
CA265_RS17330 +0.4 1.1 hypothetical protein compare
CA265_RS06010 +0.4 1.0 hypothetical protein compare
CA265_RS09840 +0.4 1.3 YajQ family cyclic di-GMP-binding protein compare
CA265_RS25015 +0.4 2.8 hypothetical protein compare
CA265_RS16105 +0.4 0.8 hypothetical protein compare
CA265_RS22715 +0.4 2.7 acyl-CoA dehydrogenase compare
CA265_RS13050 +0.4 2.1 hypothetical protein compare
CA265_RS19140 +0.4 1.0 tRNA-Ile compare
CA265_RS18420 +0.4 2.0 hypothetical protein compare
CA265_RS14015 +0.4 1.0 transcriptional regulator compare
CA265_RS25435 +0.4 1.3 hypothetical protein compare
CA265_RS04465 +0.4 2.3 PspC family transcriptional regulator compare
CA265_RS04600 +0.4 2.2 hypothetical protein compare
CA265_RS07110 +0.4 1.8 hypothetical protein compare
CA265_RS19590 +0.4 1.6 hypothetical protein compare
CA265_RS15760 +0.4 2.4 peroxiredoxin compare
CA265_RS09330 +0.4 1.9 AAA family ATPase compare
CA265_RS03085 +0.4 2.5 hypothetical protein compare
CA265_RS19105 +0.4 1.6 hypothetical protein compare
CA265_RS17570 +0.4 1.4 peptidylprolyl isomerase compare
CA265_RS07470 +0.4 2.0 hypothetical protein compare
CA265_RS23675 +0.4 0.6 hypothetical protein compare
CA265_RS18525 +0.4 1.3 four helix bundle protein compare
CA265_RS23145 +0.4 1.4 hypothetical protein compare
CA265_RS09615 +0.4 1.7 thioesterase compare
CA265_RS14155 +0.4 1.5 hypothetical protein compare
CA265_RS02550 +0.4 1.0 tRNA-Phe compare
CA265_RS16225 +0.4 0.8 hypothetical protein compare
CA265_RS22965 +0.4 1.7 leucyl/phenylalanyl-tRNA--protein transferase compare
CA265_RS18870 +0.4 1.6 hypothetical protein compare
CA265_RS04790 +0.4 1.6 hypothetical protein compare
CA265_RS09645 +0.4 2.1 hypothetical protein compare
CA265_RS25410 +0.4 2.1 gluconate kinase compare
CA265_RS22655 +0.3 1.7 hypothetical protein compare
CA265_RS22595 +0.3 2.5 methyltransferase type 11 compare
CA265_RS09425 +0.3 0.9 hypothetical protein compare
CA265_RS08585 +0.3 1.8 hypothetical protein compare
CA265_RS13735 +0.3 1.1 AsnC family transcriptional regulator compare
CA265_RS20380 +0.3 1.9 hemagglutinin compare
CA265_RS24770 +0.3 0.7 hypothetical protein compare
CA265_RS10385 +0.3 1.4 hypothetical protein compare
CA265_RS24025 +0.3 1.8 hypothetical protein compare
CA265_RS14370 +0.3 1.4 hypothetical protein compare
CA265_RS03210 +0.3 2.3 hypothetical protein compare
CA265_RS24195 +0.3 2.7 TetR family transcriptional regulator compare
CA265_RS15595 +0.3 2.3 hypothetical protein compare
CA265_RS12320 +0.3 1.3 hypothetical protein compare
CA265_RS06265 +0.3 0.8 cold-shock protein compare
CA265_RS20010 +0.3 1.3 methylmalonyl-CoA mutase compare
CA265_RS20100 +0.3 1.9 hypothetical protein compare
CA265_RS19940 +0.3 2.6 hypothetical protein compare
CA265_RS19930 +0.3 1.6 hypothetical protein compare
CA265_RS10655 +0.3 1.7 hypothetical protein compare
CA265_RS04485 +0.3 1.0 hypothetical protein compare
CA265_RS22800 +0.3 2.2 glycosyl transferase compare
CA265_RS19705 +0.3 1.3 tRNA-binding protein compare
CA265_RS23735 +0.3 1.1 alpha/beta hydrolase compare
CA265_RS01310 +0.3 2.3 hypothetical protein compare
CA265_RS02180 +0.3 2.5 hypothetical protein compare
CA265_RS21355 +0.3 1.6 hypothetical protein compare
CA265_RS01150 +0.3 1.6 hypothetical protein compare
CA265_RS25075 +0.3 1.5 phenylacetic acid degradation protein compare
CA265_RS25020 +0.3 1.6 NADH:ubiquinone oxidoreductase compare
CA265_RS14960 +0.3 1.4 hypothetical protein compare
CA265_RS11750 +0.3 1.1 hypothetical protein compare
CA265_RS06180 +0.3 1.8 hypothetical protein compare
CA265_RS05945 +0.3 1.1 polysaccharide biosynthesis protein GtrA compare
CA265_RS23455 +0.3 1.3 hypothetical protein compare
CA265_RS15900 +0.3 0.8 hypothetical protein compare
CA265_RS22600 +0.3 1.7 hypothetical protein compare
CA265_RS25325 +0.3 2.1 ATPase compare
CA265_RS14435 +0.3 1.1 GNAT family N-acetyltransferase compare
CA265_RS08125 +0.3 2.0 hypothetical protein compare
CA265_RS06435 +0.3 1.2 hypothetical protein compare
CA265_RS17390 +0.3 1.6 PadR family transcriptional regulator compare
CA265_RS00240 +0.3 1.5 histidine kinase compare
CA265_RS22455 +0.3 1.7 hypothetical protein compare
CA265_RS16575 +0.3 2.1 secretion protein HlyD compare
CA265_RS09165 +0.3 1.6 AAA family ATPase compare
CA265_RS03525 +0.3 0.9 hypothetical protein compare
CA265_RS15500 +0.3 1.4 hypothetical protein compare
CA265_RS24970 +0.3 1.8 AAA family ATPase compare
CA265_RS21365 +0.3 0.6 thiol reductase thioredoxin compare
CA265_RS13125 +0.3 1.5 GNAT family N-acetyltransferase compare
CA265_RS19465 +0.3 1.1 protein tyrosine phosphatase compare
CA265_RS02745 +0.3 1.9 hypothetical protein compare
CA265_RS24370 +0.3 1.0 hypothetical protein compare
CA265_RS08390 +0.3 1.7 dihydrodipicolinate synthase family protein compare
CA265_RS24625 +0.3 2.2 LacI family transcriptional regulator compare
CA265_RS21525 +0.3 0.9 hypothetical protein compare
CA265_RS00505 +0.3 1.9 xylose isomerase compare
CA265_RS23940 +0.3 1.4 hypothetical protein compare
CA265_RS17885 +0.3 0.9 CopY family transcriptional repressor compare
CA265_RS04640 +0.3 1.9 efflux transporter periplasmic adaptor subunit compare
CA265_RS24980 +0.3 1.2 hypothetical protein compare
CA265_RS01180 +0.3 2.0 riboflavin biosynthesis protein compare
CA265_RS13595 +0.3 2.1 hypothetical protein compare
CA265_RS09335 +0.3 1.6 DUF4442 domain-containing protein compare
CA265_RS20525 +0.3 0.5 hypothetical protein compare
CA265_RS21295 +0.3 1.6 hypothetical protein compare
CA265_RS16615 +0.3 0.7 hypothetical protein compare
CA265_RS07240 +0.3 1.6 DUF1826 domain-containing protein compare
CA265_RS23740 +0.3 1.9 Crp/Fnr family transcriptional regulator compare
CA265_RS13520 +0.3 2.1 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS24115 +0.3 1.4 hypothetical protein compare
CA265_RS03205 +0.3 1.4 AraC family transcriptional regulator compare
CA265_RS14945 +0.3 1.9 helicase compare
CA265_RS06975 +0.3 1.5 hypothetical protein compare
CA265_RS24755 +0.3 1.2 hypothetical protein compare
CA265_RS12780 +0.3 1.0 hypothetical protein compare
CA265_RS21700 +0.3 1.3 two-component sensor histidine kinase compare
CA265_RS19660 +0.3 1.0 hypothetical protein compare
CA265_RS21330 +0.3 1.7 TetR family transcriptional regulator compare
CA265_RS14955 +0.3 1.3 hypothetical protein compare
CA265_RS17315 +0.3 0.7 hypothetical protein compare
CA265_RS17560 +0.3 1.9 peptidylprolyl isomerase compare
CA265_RS16950 +0.3 2.0 hypothetical protein compare
CA265_RS22350 +0.3 1.4 diacylglycerol kinase compare
CA265_RS02840 +0.3 1.1 30S ribosomal protein S30 compare
CA265_RS12370 +0.3 1.9 alpha/beta hydrolase compare
CA265_RS22045 +0.3 1.5 hypothetical protein compare
CA265_RS12735 +0.3 1.8 RNA polymerase subunit sigma-70 compare
CA265_RS17420 +0.3 1.5 glyoxalase compare
CA265_RS06185 +0.3 2.1 hypothetical protein compare
CA265_RS19155 +0.3 1.8 hypothetical protein compare
CA265_RS02125 +0.3 1.6 hypothetical protein compare
CA265_RS03640 +0.3 1.6 ATP phosphoribosyltransferase compare
CA265_RS13555 +0.3 1.1 hypothetical protein compare
CA265_RS19910 +0.3 1.6 GDSL family lipase compare
CA265_RS10020 +0.3 1.3 hypothetical protein compare
CA265_RS15405 +0.3 1.7 ATPase compare
CA265_RS22545 +0.3 1.4 lysophospholipase compare
CA265_RS20400 +0.3 1.8 hypothetical protein compare
CA265_RS13625 +0.3 1.7 hypothetical protein compare
CA265_RS09765 +0.3 1.5 sialate O-acetylesterase compare
CA265_RS25360 +0.3 1.1 phosphoribosyltransferase compare
CA265_RS19350 +0.3 1.7 ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in r2a experiments