Experiment set2IT041 for Methanococcus maripaludis JJ
H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
Quality Metrics:
| Time0 | 10-Oct Methanococcus_JJ_ML1_set2 | which Time0s the sample was compared to |
| cor12 | 0.57 | rank correlation(fit1, fit2), where fit1 is fitness for the first half (10-50%) and fit2 is fitness for the second half (50-90%) of each gene |
| maxFit | 0.74 | The maximum fitness value |
| opcor | 0.44 | rank correlation(upstream gene, downstream gene) over pairs that are adjacent and likely to be in the same operon |
| adjcor | 0.08 | like opcor but for adjacent genes that are not on the same strand |
| gccor | -0.11 | linear correlation of gene fitness and gene GC content |
| mad12 | 0.16 | median absolute difference of fit1, fit2 |
| mad12c | 0.93 | median absolute difference of log count for 1st and 2nd half of genes in this sample |
| mad12c_t0 | 0.87 | like mad12c but for the Time0s |
| gMed | 513 | median reads per gene in this sample |
| gMedt0 | 1521 | median reads per gene in the Time0 sample |
| gMean | 847 | mean reads per gene in this sample |
| nMapped | 2.039 M | #reads for this sample that corresponded to a known strain (in millions) |
| nPastEnd | 0.000 M | #reads that corresponded to a strain that has an insertion within the suicide vector instead of within the genome. |
| nGenic | 1.172 M | #reads that lie within central 10-90% of a gene |
| nUsed | 1.171 M | #reads used to estimate gene fitness (genic and enough coverage for strain and for gene) |
Specific Phenotypes
None in this experiment