Experiment set2IT041 for Ralstonia sp. UNC404CL21Col

Compare to:

Trans-2-methyl-2-butenoic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -7.5 -5.2 phosphoserine phosphatase SerB compare
ABZR87_RS16660 -7.3 -5.1 helix-turn-helix domain-containing protein compare
ABZR87_RS02155 -7.2 -5.0 anthranilate phosphoribosyltransferase compare
ABZR87_RS07360 -7.1 -7.0 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14540 -7.0 -6.8 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS16730 -7.0 -6.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS14505 -6.9 -4.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS16735 -6.7 -23.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS01810 -6.6 -4.5 glutamate 5-kinase compare
ABZR87_RS02160 -6.4 -6.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14500 -6.4 -10.7 tryptophan synthase subunit beta compare
ABZR87_RS02570 -6.3 -17.4 glutamate synthase-related protein compare
ABZR87_RS01110 -6.3 -11.4 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS16740 -6.1 -8.4 2-methylcitrate synthase compare
ABZR87_RS09445 -6.1 -14.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS16170 -6.0 -5.9 argininosuccinate lyase compare
ABZR87_RS09465 -5.8 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14535 -5.7 -5.6 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS05200 -5.7 -18.9 homoserine O-acetyltransferase compare
ABZR87_RS06770 -5.6 -10.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS02595 -5.6 -12.7 shikimate kinase compare
ABZR87_RS00200 -5.6 -5.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS08630 -5.4 -13.7 dihydroorotase compare
ABZR87_RS13790 -5.4 -12.2 chorismate synthase compare
ABZR87_RS06305 -5.4 -5.2 acetyl-CoA C-acetyltransferase compare
ABZR87_RS14530 -5.3 -8.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS02145 -5.3 -3.7 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02640 -5.3 -17.3 diaminopimelate decarboxylase compare
ABZR87_RS02565 -5.3 -6.3 glutamate synthase subunit beta compare
ABZR87_RS00195 -5.2 -5.9 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS09450 -5.2 -10.0 prephenate dehydratase compare
ABZR87_RS05100 -5.2 -8.6 RNA polymerase-binding protein DksA compare
ABZR87_RS14950 -5.1 -3.5 acetolactate synthase small subunit compare
ABZR87_RS02590 -5.0 -13.0 3-dehydroquinate synthase compare
ABZR87_RS00190 -5.0 -11.7 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS07380 -5.0 -14.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS00745 -4.9 -3.4 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS00435 -4.9 -13.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS04865 -4.9 -3.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS07060 -4.8 -18.0 RNA polymerase factor sigma-54 compare
ABZR87_RS00185 -4.8 -3.3 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00210 -4.6 -9.4 nitrite/sulfite reductase compare
ABZR87_RS07665 -4.6 -12.2 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS16745 -4.6 -8.7 methylisocitrate lyase compare
ABZR87_RS02140 -4.5 -17.9 anthranilate synthase component I compare
ABZR87_RS22970 -4.5 -14.5 cystathionine gamma-synthase family protein compare
ABZR87_RS09935 -4.4 -5.2 amino acid aminotransferase compare
ABZR87_RS05170 -4.4 -3.0 acetylglutamate kinase compare
ABZR87_RS00325 -4.4 -3.0 peptidylprolyl isomerase compare
ABZR87_RS16140 -4.3 -16.9 phosphoenolpyruvate carboxylase compare
ABZR87_RS07050 -4.3 -2.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS14490 -4.3 -11.0 tryptophan synthase subunit alpha compare
ABZR87_RS06315 -4.2 -18.5 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS14115 -4.2 -9.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS08695 -4.1 -16.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS00835 -4.1 -7.9 argininosuccinate synthase compare
ABZR87_RS11440 -4.0 -7.7 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS17455 -3.9 -7.8 AraC family transcriptional regulator compare
ABZR87_RS11925 -3.8 -15.4 phosphoenolpyruvate synthase compare
ABZR87_RS00220 -3.8 -9.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS09515 -3.7 -2.6 cysteine synthase CysM compare
ABZR87_RS11125 -3.6 -6.9 cell division protein ZapE compare
ABZR87_RS06705 -3.3 -15.6 glutamate--cysteine ligase compare
ABZR87_RS14955 -3.3 -3.2 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS10610 -3.3 -3.2 inositol monophosphatase family protein compare
ABZR87_RS07705 -3.3 -3.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS06710 -3.3 -15.5 glutathione synthase compare
ABZR87_RS13415 -3.2 -8.8 IclR family transcriptional regulator compare
ABZR87_RS12795 -3.2 -8.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS00285 -3.2 -2.2 acetylornithine transaminase compare
ABZR87_RS08700 -3.2 -13.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS12790 -3.1 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06320 -3.0 -11.3 isovaleryl-CoA dehydrogenase compare
ABZR87_RS13300 -3.0 -11.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS05590 -3.0 -5.2 orotate phosphoribosyltransferase compare
ABZR87_RS16750 -3.0 -9.3 propionate catabolism operon regulatory protein PrpR compare
ABZR87_RS07730 -2.9 -2.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS10400 -2.8 -3.3 hypothetical protein compare
ABZR87_RS17465 -2.8 -8.4 AMP-binding protein compare
ABZR87_RS08625 -2.8 -4.1 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS07700 -2.8 -3.3 peptidylprolyl isomerase compare
ABZR87_RS15440 -2.8 -3.3 ribonuclease G compare
ABZR87_RS00205 -2.7 -3.8 DUF934 domain-containing protein compare
ABZR87_RS07675 -2.7 -11.8 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS00875 -2.6 -5.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS17460 -2.6 -6.3 acyl-CoA dehydrogenase compare
ABZR87_RS13475 -2.5 -9.1 PAS domain S-box protein compare
ABZR87_RS16180 -2.4 -2.9 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS04785 -2.4 -10.1 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS04940 -2.4 -9.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS10240 -2.3 -3.1 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS07035 -2.2 -9.4 RNase adapter RapZ compare
ABZR87_RS01605 -2.2 -8.1 shikimate dehydrogenase compare
ABZR87_RS06715 -2.2 -5.3 PTS sugar transporter subunit IIA compare
ABZR87_RS10980 -2.2 -2.6 tRNA-Leu compare
ABZR87_RS13175 -2.2 -2.2 tRNA-Leu compare
ABZR87_RS14380 -2.1 -7.8 glutamate racemase compare
ABZR87_RS00215 -2.1 -4.9 sulfite exporter TauE/SafE family protein compare
ABZR87_RS06495 -2.1 -3.4 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS07470 -2.0 -8.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01615 -2.0 -3.1 RNB domain-containing ribonuclease compare
ABZR87_RS13350 -1.9 -5.1 potassium transporter Kup compare
ABZR87_RS01980 -1.9 -3.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS10170 -1.8 -6.0 RseA family anti-sigma factor compare
ABZR87_RS06645 -1.8 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS00350 -1.8 -6.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS14375 -1.8 -3.4 fumarate hydratase compare
ABZR87_RS10785 -1.8 -5.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS05350 -1.8 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS04125 -1.7 -4.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS11170 -1.7 -1.5 FixH family protein compare
ABZR87_RS17475 -1.7 -7.4 3-hydroxyisobutyrate dehydrogenase compare
ABZR87_RS09895 -1.7 -1.8 DUF1841 family protein compare
ABZR87_RS11195 -1.6 -7.5 pseudouridine synthase compare
ABZR87_RS14745 -1.6 -1.9 urease subunit gamma compare
ABZR87_RS00355 -1.6 -8.6 quinolinate synthase NadA compare
ABZR87_RS22690 -1.5 -2.4 XRE family transcriptional regulator compare
ABZR87_RS11435 -1.5 -3.8 Mth938-like domain-containing protein compare
ABZR87_RS16125 -1.5 -7.0 heme biosynthesis protein HemY compare
ABZR87_RS16960 -1.5 -3.5 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS04945 -1.5 -2.7 DUF4390 domain-containing protein compare
ABZR87_RS13290 -1.5 -4.7 3-ketoacyl-ACP reductase compare
ABZR87_RS11815 -1.5 -5.4 [protein-PII] uridylyltransferase compare
ABZR87_RS00580 -1.5 -2.5 hypothetical protein compare
ABZR87_RS03780 -1.4 -1.8 thiosulfate oxidation carrier protein SoxY compare
ABZR87_RS05065 -1.4 -3.8 tyrosine recombinase XerC compare
ABZR87_RS10780 -1.4 -3.6 PD-(D/E)XK nuclease family protein compare
ABZR87_RS01285 -1.3 -1.2 preprotein translocase subunit YajC compare
ABZR87_RS14080 -1.3 -4.0 phosphate signaling complex protein PhoU compare
ABZR87_RS17470 -1.3 -5.0 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
ABZR87_RS14085 -1.3 -7.8 phosphate ABC transporter ATP-binding protein PstB compare
ABZR87_RS10175 -1.3 -4.2 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS01645 -1.3 -2.6 type II 3-dehydroquinate dehydratase compare
ABZR87_RS20500 -1.3 -1.4 hypothetical protein compare
ABZR87_RS07620 -1.3 -2.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS02575 -1.3 -4.3 transposase compare
ABZR87_RS06310 -1.2 -3.5 carbonate dehydratase compare
ABZR87_RS09460 -1.2 -3.8 prephenate dehydrogenase compare
ABZR87_RS13285 -1.2 -7.4 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02480 -1.2 -2.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS02180 -1.2 -7.9 M61 family metallopeptidase compare
ABZR87_RS20450 -1.1 -1.5 HAD family phosphatase compare
ABZR87_RS14495 -1.1 -5.2 site-specific DNA-methyltransferase compare
ABZR87_RS06745 -1.1 -5.2 S41 family peptidase compare
ABZR87_RS07020 -1.1 -7.8 dynamin-like GTPase family protein compare
ABZR87_RS12785 -1.1 -5.1 endopeptidase La compare
ABZR87_RS03420 -1.1 -1.4 type II secretion system minor pseudopilin GspI compare
ABZR87_RS11000 -1.1 -5.1 transaldolase compare
ABZR87_RS00830 -1.1 -2.4 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS08645 -1.0 -1.0 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS09615 -1.0 -2.0 50S ribosomal protein L19 compare
ABZR87_RS21095 -1.0 -0.9 TRAP transporter small permease compare
ABZR87_RS00795 -1.0 -2.6 site-specific tyrosine recombinase XerD compare
ABZR87_RS06395 -1.0 -3.6 response regulator compare
ABZR87_RS14095 -1.0 -3.3 phosphate ABC transporter permease PstC compare
ABZR87_RS21795 -1.0 -3.7 NUDIX domain-containing protein compare
ABZR87_RS14680 -1.0 -1.1 SDR family oxidoreductase compare
ABZR87_RS01425 -0.9 -2.4 ferric iron uptake transcriptional regulator compare
ABZR87_RS10620 -0.9 -1.1 serine O-acetyltransferase compare
ABZR87_RS07625 -0.9 -1.8 Holliday junction branch migration protein RuvA compare
ABZR87_RS01555 -0.9 -1.1 barstar family protein compare
ABZR87_RS07005 -0.9 -1.3 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS13010 -0.9 -1.4 GPW/gp25 family protein compare
ABZR87_RS07635 -0.9 -1.8 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS10195 -0.9 -2.9 signal peptidase I compare
ABZR87_RS14090 -0.9 -3.7 phosphate ABC transporter permease PstA compare
ABZR87_RS00345 -0.9 -6.8 L-aspartate oxidase compare
ABZR87_RS09955 -0.9 -4.1 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS15805 -0.9 -4.4 IclR family transcriptional regulator compare
ABZR87_RS10690 -0.9 -4.9 ABC transporter permease compare
ABZR87_RS14575 -0.8 -2.3 GntR family transcriptional regulator compare
ABZR87_RS10085 -0.8 -0.8 Rne/Rng family ribonuclease compare
ABZR87_RS14510 -0.8 -3.6 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS21365 -0.8 -1.1 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS05015 -0.8 -3.3 penicillin-binding protein 2 compare
ABZR87_RS15305 -0.8 -1.6 pyroglutamyl-peptidase I compare
ABZR87_RS07500 -0.8 -4.8 acyl-CoA thioesterase compare
ABZR87_RS11015 -0.8 -3.9 amino-acid N-acetyltransferase compare
ABZR87_RS10685 -0.8 -4.9 microcin C ABC transporter permease YejB compare
ABZR87_RS13400 -0.8 -1.0 hypothetical protein compare
ABZR87_RS10680 -0.8 -5.3 extracellular solute-binding protein compare
ABZR87_RS03950 -0.8 -2.1 GNAT family N-acetyltransferase compare
ABZR87_RS15365 -0.8 -2.5 YkvA family protein compare
ABZR87_RS05025 -0.8 -1.3 rod shape-determining protein MreC compare
ABZR87_RS09525 -0.8 -5.6 histone deacetylase family protein compare
ABZR87_RS11625 -0.8 -4.8 malate synthase A compare
ABZR87_RS22405 -0.8 -0.8 hypothetical protein compare
ABZR87_RS22485 -0.8 -3.5 FAD-dependent oxidoreductase compare
ABZR87_RS04500 -0.8 -1.4 hypothetical protein compare
ABZR87_RS16270 -0.8 -1.6 cold-shock protein compare
ABZR87_RS05010 -0.8 -2.1 rod shape-determining protein RodA compare
ABZR87_RS09625 -0.8 -5.3 CobD/CbiB family protein compare
ABZR87_RS02150 -0.8 -1.4 lysozyme inhibitor LprI family protein compare
ABZR87_RS23360 -0.7 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS21460 -0.7 -2.8 hypothetical protein compare
ABZR87_RS15810 -0.7 -2.5 hypothetical protein compare
ABZR87_RS10550 -0.7 -1.3 outer membrane protein assembly factor BamC compare
ABZR87_RS05140 -0.7 -1.1 ATP-binding protein compare
ABZR87_RS02385 -0.7 -3.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS08980 -0.7 -2.1 cell envelope integrity protein TolA compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Trans-2-methyl-2-butenoic acid in Ralstonia sp. UNC404CL21Col

For carbon source Trans-2-methyl-2-butenoic acid across organisms