Experiment set2IT040 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Benzalkonium Chloride 0.016 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5527 -6.1 -4.2 Cold shock protein CspC compare
Pf6N2E2_3666 -5.1 -7.0 InaA protein compare
Pf6N2E2_2824 -4.7 -12.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_2261 -4.5 -5.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_2129 -4.4 -6.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2823 -4.3 -7.1 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_623 -4.3 -2.0 FIG00954674: hypothetical protein compare
Pf6N2E2_3257 -4.2 -5.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_6058 -4.1 -8.1 FIG139976: hypothetical protein compare
Pf6N2E2_5183 -3.9 -20.3 Paraquat-inducible protein B compare
Pf6N2E2_2825 -3.9 -4.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5182 -3.7 -9.3 Paraquat-inducible protein A compare
Pf6N2E2_5430 -3.6 -11.8 Transglycosylase, Slt family compare
Pf6N2E2_5181 -3.5 -16.3 Paraquat-inducible protein A compare
Pf6N2E2_3258 -3.4 -6.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2753 -3.2 -5.7 HtrA protease/chaperone protein compare
Pf6N2E2_2218 -3.1 -5.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4352 -3.1 -4.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3260 -3.0 -8.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3516 -3.0 -4.0 Probable transmembrane protein compare
Pf6N2E2_624 -3.0 -9.4 hypothetical protein PA3071 compare
Pf6N2E2_625 -2.9 -7.7 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_4075 -2.9 -8.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_620 -2.8 -11.0 BatD compare
Pf6N2E2_3648 -2.8 -6.8 Ethidium bromide-methyl viologen resistance protein EmrE conserved
Pf6N2E2_6057 -2.6 -4.0 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4369 -2.6 -3.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3515 -2.6 -9.2 Probable transmembrane protein compare
Pf6N2E2_621 -2.5 -8.7 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5508 -2.5 -4.2 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3753 -2.4 -16.8 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_5727 -2.4 -5.3 FIG00955360: hypothetical protein compare
Pf6N2E2_3647 -2.4 -12.7 LysR family transcriptional regulator PA4989 conserved
Pf6N2E2_5536 -2.4 -2.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4417 -2.4 -4.8 Protein of unknown function DUF484 compare
Pf6N2E2_2217 -2.1 -6.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4155 -2.0 -11.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_622 -2.0 -4.9 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3062 -1.9 -4.0 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2384 -1.9 -4.9 CmpX compare
Pf6N2E2_4072 -1.8 -6.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4187 -1.8 -4.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5178 -1.8 -2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3656 -1.7 -6.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_4451 -1.7 -6.9 FIG139438: lipoprotein B compare
Pf6N2E2_2010 -1.6 -2.2 hypothetical protein compare
Pf6N2E2_3667 -1.6 -2.3 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3460 -1.6 -2.5 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3835 -1.6 -5.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4584 -1.6 -3.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5219 -1.5 -7.8 FIG140336: TPR domain protein compare
Pf6N2E2_5406 -1.5 -3.2 FIG00958224: hypothetical protein compare
Pf6N2E2_4074 -1.5 -10.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2755 -1.5 -2.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3839 -1.4 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5006 -1.4 -9.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4416 -1.4 -3.1 Tyrosine recombinase XerC compare
Pf6N2E2_3841 -1.4 -6.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2574 -1.4 -1.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_3349 -1.4 -4.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3655 -1.3 -9.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2827 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_3834 -1.3 -7.5 Lipoprotein NlpD compare
Pf6N2E2_3243 -1.3 -9.4 FIG067310: hypothetical protein compare
Pf6N2E2_955 -1.2 -2.3 FIG00953508: hypothetical protein compare
Pf6N2E2_3060 -1.2 -3.1 Outer membrane protein H precursor compare
Pf6N2E2_292 -1.2 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_4477 -1.2 -4.9 Z-ring-associated protein ZapA compare
Pf6N2E2_3664 -1.2 -6.6 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4046 -1.2 -9.8 FIG00953482: hypothetical protein compare
Pf6N2E2_3514 -1.1 -3.2 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1424 -1.1 -2.1 transcriptional regulator, TetR family compare
Pf6N2E2_3607 -1.1 -5.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3039 -1.1 -3.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_58 -1.1 -1.5 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2111 -1.1 -2.8 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_288 -1.1 -1.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_248 -1.1 -7.1 hypothetical protein compare
Pf6N2E2_4762 -1.1 -3.1 Biotin synthesis protein BioH compare
Pf6N2E2_2219 -1.1 -2.3 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2320 -1.1 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4585 -1.1 -7.7 Cell division protein FtsX compare
Pf6N2E2_5704 -1.0 -4.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_291 -1.0 -5.2 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_4159 -1.0 -4.2 Cytochrome c4 compare
Pf6N2E2_3842 -1.0 -4.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2045 -1.0 -2.7 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_6065 -1.0 -2.1 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2646 -1.0 -1.1 FIG00953416: hypothetical protein compare
Pf6N2E2_595 -0.9 -2.5 Arsenical resistance operon repressor compare
Pf6N2E2_5610 -0.9 -4.8 two-component system sensor protein compare
Pf6N2E2_4640 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_4162 -0.9 -2.3 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5160 -0.9 -1.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4362 -0.9 -3.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5001 -0.9 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3611 -0.9 -1.5 HflC protein compare
Pf6N2E2_4999 -0.9 -3.6 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2473 -0.9 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_3003 -0.9 -1.4 Bacteriophage protein GP46 compare
Pf6N2E2_2487 -0.9 -1.2 FIG00956090: hypothetical protein compare
Pf6N2E2_4414 -0.9 -2.4 FIG00953808: hypothetical protein compare
Pf6N2E2_746 -0.9 -1.4 FIG00958097: hypothetical protein compare
Pf6N2E2_5428 -0.8 -4.3 DNA recombination and repair protein RecO compare
Pf6N2E2_1396 -0.8 -1.8 ABC transporter, ATP-binding protein compare
Pf6N2E2_4206 -0.8 -1.6 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3270 -0.8 -3.7 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1315 -0.8 -1.5 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_417 -0.8 -2.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_5340 -0.8 -2.8 Stringent starvation protein A compare
Pf6N2E2_5723 -0.8 -5.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2756 -0.8 -4.4 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4601 -0.8 -2.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_2693 -0.8 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3504 -0.8 -5.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_1152 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_4043 -0.8 -3.4 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_2699 -0.8 -4.4 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2973 -0.8 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3300 -0.8 -2.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_4531 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_3725 -0.8 -2.1 FIG085779: Lipoprotein compare
Pf6N2E2_5806 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_3351 -0.8 -3.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2674 -0.8 -1.2 FIG00953856: hypothetical protein compare
Pf6N2E2_1821 -0.8 -2.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2869 -0.8 -0.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_1947 -0.8 -3.6 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_2062 -0.8 -1.7 FIG00955561: hypothetical protein compare
Pf6N2E2_84 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_4843 -0.8 -4.4 FIG00956941: hypothetical protein compare
Pf6N2E2_3617 -0.7 -2.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2286 -0.7 -2.0 FIG00953287: hypothetical protein compare
Pf6N2E2_4993 -0.7 -1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5605 -0.7 -1.4 FxsA protein compare
Pf6N2E2_1812 -0.7 -2.6 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_5111 -0.7 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_75 -0.7 -1.7 Colicin V production protein compare
Pf6N2E2_1660 -0.7 -2.2 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_2180 -0.7 -2.1 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_6099 -0.7 -1.2 tRNA-Glu-TTC compare
Pf6N2E2_4197 -0.7 -4.8 DNA recombination and repair protein RecF compare
Pf6N2E2_5242 -0.7 -1.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2513 -0.7 -1.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4764 -0.7 -3.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_5663 -0.7 -2.7 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_5084 -0.7 -4.9 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_2325 -0.7 -3.6 Recombination protein RecR compare
Pf6N2E2_5155 -0.7 -1.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1294 -0.7 -1.6 Carbon starvation protein A compare
Pf6N2E2_5328 -0.7 -2.9 FIG00958649: hypothetical protein compare
Pf6N2E2_4147 -0.7 -4.2 Fused spore maturation proteins A and B compare
Pf6N2E2_5062 -0.7 -3.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf6N2E2_3833 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_2447 -0.7 -3.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2363 -0.7 -2.8 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_5534 -0.7 -3.0 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4454 -0.7 -3.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3370 -0.6 -4.7 DNA repair protein RecN compare
Pf6N2E2_5505 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_4759 -0.6 -5.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2264 -0.6 -2.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3033 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_3931 -0.6 -2.8 ATPases of the AAA+ class compare
Pf6N2E2_4630 -0.6 -2.8 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_1774 -0.6 -0.6 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1670 -0.6 -1.6 conserved membrane protein compare
Pf6N2E2_463 -0.6 -3.0 Transcriptional regulatory protein RstA compare
Pf6N2E2_4478 -0.6 -3.3 FIG019278: hypothetical protein compare
Pf6N2E2_3876 -0.6 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_6035 -0.6 -1.6 alpha/beta hydrolase fold compare
Pf6N2E2_1236 -0.6 -1.3 Transcriptional regulator, LysR family compare
Pf6N2E2_1705 -0.6 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2510 -0.6 -1.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_127 -0.6 -0.9 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3190 -0.6 -2.4 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_3844 -0.6 -2.0 hypothetical protein compare
Pf6N2E2_4272 -0.6 -2.2 putative membrane protein compare
Pf6N2E2_4273 -0.6 -3.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5584 -0.6 -1.5 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2527 -0.6 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1469 -0.6 -2.2 NAD-dependent formate dehydrogenase gamma subunit compare
Pf6N2E2_1283 -0.6 -1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_6045 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_1792 -0.6 -1.9 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_3665 -0.6 -0.8 serine/threonine protein kinase compare
Pf6N2E2_5171 -0.6 -4.9 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1694 -0.6 -0.8 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1340 -0.6 -1.7 major pilin protein fimA compare
Pf6N2E2_2059 -0.6 -1.6 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_5188 -0.6 -2.2 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_180 -0.6 -2.4 Transcriptional regulator, MerR family compare
Pf6N2E2_541 -0.6 -2.5 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_2152 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_2128 -0.6 -2.5 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2479 -0.6 -2.2 Transcription elongation factor GreB compare
Pf6N2E2_1246 -0.6 -1.2 FIG00961372: hypothetical protein compare
Pf6N2E2_2868 -0.6 -2.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5342 -0.6 -1.3 21 kDa hemolysin precursor compare
Pf6N2E2_1295 -0.5 -3.3 Sensor histidine kinase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Benzalkonium Chloride in Pseudomonas fluorescens FW300-N2E2

For stress Benzalkonium Chloride across organisms