Experiment set2IT040 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.6 -5.4 O-succinylhomoserine sulfhydrylase compare
AO353_13070 -4.2 -8.0 phosphoserine phosphatase compare
AO353_07210 -4.0 -5.5 indole-3-glycerol-phosphate synthase compare
AO353_07230 -3.9 -14.9 anthranilate synthase compare
AO353_02070 -3.9 -6.9 prephenate dehydratase compare
AO353_20665 -3.8 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07220 -3.8 -8.1 anthranilate synthase compare
AO353_12235 -3.8 -13.7 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) conserved
AO353_14505 -3.7 -11.7 ketol-acid reductoisomerase compare
AO353_12285 -3.7 -10.7 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
AO353_07215 -3.7 -7.4 anthranilate phosphoribosyltransferase compare
AO353_08685 -3.7 -8.2 N-acetylglutamate synthase compare
AO353_10670 -3.7 -8.5 shikimate dehydrogenase compare
AO353_14400 -3.6 -2.5 Fis family transcriptional regulator compare
AO353_12245 -3.6 -5.4 hypothetical protein conserved
AO353_20635 -3.6 -11.8 3-isopropylmalate dehydrogenase compare
AO353_12250 -3.6 -10.0 Urocanate hydratase (EC 4.2.1.49) (from data) conserved
AO353_08185 -3.6 -10.4 methionine biosynthesis protein MetW compare
AO353_20540 -3.6 -8.8 aromatic amino acid aminotransferase compare
AO353_08780 -3.5 -9.3 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12280 -3.5 -12.6 Imidazolonepropionase (EC 3.5.2.7) (from data) conserved
AO353_08180 -3.5 -13.6 homoserine O-acetyltransferase compare
AO353_20625 -3.4 -5.1 3-isopropylmalate dehydratase compare
AO353_02075 -3.4 -10.9 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12270 -3.3 -3.9 histidine ammonia-lyase compare
AO353_00430 -3.3 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_08345 -3.3 -9.7 dihydroxy-acid dehydratase compare
AO353_10710 -3.3 -4.5 tryptophan synthase subunit beta compare
AO353_00310 -3.3 -9.8 transaldolase compare
AO353_20620 -3.2 -7.7 isopropylmalate isomerase compare
AO353_12115 -3.2 -2.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_22800 -3.1 -3.6 sulfite reductase compare
AO353_06495 -3.1 -5.9 gamma-glutamyl phosphate reductase compare
AO353_04155 -3.0 -13.2 ornithine carbamoyltransferase compare
AO353_09240 -3.0 -2.9 acetylglutamate kinase compare
AO353_11775 -3.0 -8.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_15925 -3.0 -13.0 2-isopropylmalate synthase compare
AO353_19060 -3.0 -5.9 CysB family transcriptional regulator compare
AO353_14500 -3.0 -6.8 acetolactate synthase 3 regulatory subunit compare
AO353_14495 -2.9 -11.1 acetolactate synthase 3 catalytic subunit compare
AO353_07155 -2.9 -8.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_04105 -2.9 -9.1 argininosuccinate synthase compare
AO353_14115 -2.8 -7.0 gamma-glutamyl kinase compare
AO353_12500 -2.8 -1.9 shikimate kinase compare
AO353_05080 -2.8 -12.3 sulfate adenylyltransferase compare
AO353_01375 -2.7 -7.8 phosphate acyltransferase compare
AO353_02710 -2.7 -10.7 (p)ppGpp synthetase compare
AO353_11750 -2.6 -3.9 ATPase compare
AO353_09000 -2.6 -5.7 argininosuccinate lyase compare
AO353_08510 -2.6 -5.9 3-phosphoglycerate dehydrogenase compare
AO353_12460 -2.6 -9.4 malate dehydrogenase compare
AO353_08015 -2.5 -8.0 5,10-methylenetetrahydrofolate reductase compare
AO353_02250 -2.5 -4.9 chorismate synthase compare
AO353_09285 -2.5 -12.0 reactive intermediate/imine deaminase compare
AO353_03795 -2.4 -4.9 fumarate hydratase compare
AO353_12255 -2.4 -11.0 sulfonate ABC transporter substrate-binding protein conserved
AO353_05075 -2.4 -10.9 adenylylsulfate kinase compare
AO353_18540 -2.4 -3.8 pseudouridine synthase compare
AO353_13140 -2.3 -5.9 tRNA dimethylallyltransferase compare
AO353_11730 -2.3 -9.0 glutamate--cysteine ligase compare
AO353_14405 -2.3 -13.2 ATPase compare
AO353_07075 -2.3 -5.5 elongation factor Tu compare
AO353_00495 -2.3 -3.0 DNA topoisomerase I compare
AO353_12275 -2.2 -12.7 histidine permease (from data) conserved
AO353_07315 -2.2 -2.9 rRNA methyltransferase compare
AO353_14370 -2.2 -7.7 glucose-6-phosphate isomerase compare
AO353_08885 -2.1 -14.9 polyphosphate kinase compare
AO353_08165 -2.1 -3.9 pyrroline-5-carboxylate reductase compare
AO353_07355 -2.0 -6.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_15250 -2.0 -4.1 cytochrome B compare
AO353_03580 -2.0 -4.1 ATP-dependent DNA helicase RuvB compare
AO353_16210 -2.0 -12.0 XRE family transcriptional regulator compare
AO353_03525 -1.9 -9.0 quinolinate synthase A compare
AO353_08465 -1.9 -13.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_00825 -1.9 -3.7 porin compare
AO353_10455 -1.9 -2.2 tRNA modification GTPase MnmE compare
AO353_14775 -1.9 -6.5 hypothetical protein compare
AO353_14410 -1.9 -7.2 MFS transporter compare
AO353_03590 -1.9 -4.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_06850 -1.9 -5.5 MFS transporter compare
AO353_00460 -1.8 -3.4 TetR family transcriptional regulator compare
AO353_07515 -1.8 -2.7 transporter compare
AO353_20175 -1.8 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_00650 -1.8 -3.6 cytochrome biogenesis protein compare
AO353_08130 -1.8 -2.9 uracil phosphoribosyltransferase compare
AO353_14420 -1.8 -4.1 molecular chaperone DnaK compare
AO353_12105 -1.8 -6.3 peptidase S41 compare
AO353_23495 -1.8 -2.8 SAM-dependent methyltransferase compare
AO353_10495 -1.7 -3.8 serine hydroxymethyltransferase compare
AO353_04355 -1.7 -2.3 homoserine dehydrogenase compare
AO353_16530 -1.7 -2.6 ribonuclease HII compare
AO353_10030 -1.7 -9.6 pyruvate carboxylase subunit A compare
AO353_16940 -1.7 -5.5 deoxycytidine triphosphate deaminase compare
AO353_05550 -1.7 -6.5 pseudouridine synthase compare
AO353_05520 -1.7 -5.8 nicotinate-nucleotide pyrophosphorylase compare
AO353_02720 -1.7 -5.9 cysteine synthase compare
AO353_19090 -1.7 -2.6 MarR family transcriptional regulator compare
AO353_27650 -1.6 -4.6 cell division protein FtsK compare
AO353_15900 -1.6 -3.0 GTP-binding protein compare
AO353_20565 -1.6 -2.4 tRNA-Ala compare
AO353_14150 -1.6 -1.8 peptidylprolyl isomerase compare
AO353_09915 -1.6 -6.0 long-chain acyl-CoA thioester hydrolase compare
AO353_04220 -1.6 -6.0 chemotaxis protein CheY compare
AO353_20095 -1.6 -5.6 histidine kinase compare
AO353_17620 -1.6 -11.7 L-aspartate oxidase compare
AO353_03670 -1.6 -5.2 ornithine acetyltransferase compare
AO353_06040 -1.5 -3.3 exodeoxyribonuclease V subunit alpha compare
AO353_10705 -1.5 -3.5 tryptophan synthase subunit alpha compare
AO353_00510 -1.5 -5.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_07525 -1.5 -10.4 biotin synthase compare
AO353_08265 -1.5 -5.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_08470 -1.5 -4.3 RNA pyrophosphohydrolase compare
AO353_00865 -1.5 -7.8 phosphoenolpyruvate synthase compare
AO353_06045 -1.5 -6.2 exodeoxyribonuclease V subunit beta compare
AO353_13160 -1.5 -2.5 membrane protease HflC compare
AO353_03585 -1.4 -2.8 ATP-dependent DNA helicase RuvA compare
AO353_14740 -1.4 -2.9 GTP-binding protein compare
AO353_13080 -1.4 -6.5 thiosulfate sulfurtransferase compare
AO353_09950 -1.4 -4.7 aspartate ammonia-lyase compare
AO353_03710 -1.4 -2.7 formyltetrahydrofolate deformylase compare
AO353_10025 -1.3 -10.0 pyruvate carboxylase subunit B compare
AO353_09050 -1.3 -3.2 recombinase XerC compare
AO353_12510 -1.3 -8.5 cell division protein compare
AO353_11165 -1.3 -7.8 hypothetical protein compare
AO353_11850 -1.3 -3.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_02060 -1.3 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_08045 -1.3 -9.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_13100 -1.3 -1.4 GTPase RsgA compare
AO353_16845 -1.3 -7.0 LysR family transcriptional regulator compare
AO353_04565 -1.3 -4.6 nucleoid-associated protein compare
AO353_24425 -1.3 -3.1 amino acid ABC transporter permease compare
AO353_15185 -1.3 -4.1 ATPase compare
AO353_00750 -1.2 -3.4 GntR family transcriptional regulator compare
AO353_05690 -1.2 -2.7 SsrA-binding protein compare
AO353_14940 -1.2 -3.4 malate:quinone oxidoreductase compare
AO353_07505 -1.2 -6.4 dethiobiotin synthetase compare
AO353_13245 -1.2 -6.4 hypothetical protein compare
AO353_15410 -1.2 -2.0 hypothetical protein compare
AO353_06460 -1.2 -5.6 hypothetical protein compare
AO353_27435 -1.2 -2.0 hypothetical protein compare
AO353_13225 -1.2 -2.8 50S ribosomal protein L9 compare
AO353_06720 -1.2 -2.2 NrdR family transcriptional regulator compare
AO353_15260 -1.2 -4.9 stringent starvation protein A compare
AO353_16805 -1.2 -4.2 recombinase RecA compare
AO353_12870 -1.1 -8.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_13640 -1.1 -3.5 histidine kinase compare
AO353_02975 -1.1 -2.8 aspartate kinase compare
AO353_03020 -1.1 -5.5 arginine N-succinyltransferase compare
AO353_02000 -1.1 -3.5 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_02195 -1.1 -3.6 spermidine synthase compare
AO353_07495 -1.1 -8.5 acyl-CoA dehydrogenase compare
AO353_06050 -1.1 -4.6 exodeoxyribonuclease V subunit gamma compare
AO353_16810 -1.1 -3.2 recombinase RecX compare
AO353_15725 -1.1 -3.4 hypothetical protein compare
AO353_09890 -1.1 -4.0 phosphate ABC transporter ATP-binding protein compare
AO353_10715 -1.1 -5.1 LysR family transcriptional regulator conserved
AO353_03615 -1.1 -2.4 cold-shock protein compare
AO353_04965 -1.0 -3.8 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_21830 -1.0 -7.4 chemotaxis protein CheY compare
AO353_02300 -1.0 -2.3 MarR family transcriptional regulator compare
AO353_14795 -1.0 -3.8 molybdopterin-synthase adenylyltransferase compare
AO353_15905 -1.0 -4.3 outer membrane protein assembly factor BamB compare
AO353_22215 -1.0 -2.6 hypothetical protein compare
AO353_10035 -1.0 -5.1 LysR family transcriptional regulator compare
AO353_14585 -1.0 -4.0 ribosomal-protein-alanine acetyltransferase compare
AO353_10430 -1.0 -2.7 chromosome partitioning protein ParB compare
AO353_08115 -1.0 -3.8 energy transducer TonB compare
AO353_04185 -1.0 -4.3 DeoR family transcriptional regulator compare
AO353_21625 -1.0 -1.6 Fe/S biogenesis protein NfuA compare
AO353_09265 -1.0 -2.1 hypothetical protein compare
AO353_11530 -1.0 -5.7 diguanylate cyclase compare
AO353_07520 -1.0 -7.0 8-amino-7-oxononanoate synthase compare
AO353_20630 -1.0 -4.7 SAM-dependent methyltransferase compare
AO353_01550 -1.0 -3.8 hypothetical protein compare
AO353_17160 -1.0 -2.2 aspartate-semialdehyde dehydrogenase compare
AO353_05625 -1.0 -1.3 transcription elongation factor GreA compare
AO353_00585 -1.0 -6.7 cytochrome C oxidase Cbb3 compare
AO353_17035 -0.9 -3.4 hypothetical protein compare
AO353_20170 -0.9 -3.2 trigger factor compare
AO353_05150 -0.9 -3.3 ABC transporter ATP-binding protein compare
AO353_17650 -0.9 -3.7 response regulator SirA compare
AO353_14990 -0.9 -1.7 hypothetical protein compare
AO353_04175 -0.9 -2.6 glycerol uptake facilitator GlpF compare
AO353_13220 -0.9 -4.2 hypothetical protein compare
AO353_03630 -0.9 -6.5 porin compare
AO353_00635 -0.9 -2.4 hypothetical protein compare
AO353_11830 -0.9 -4.0 formate dehydrogenase family accessory protein FdhD compare
AO353_21615 -0.9 -6.1 methionine synthase compare
AO353_14935 -0.9 -2.9 aminopeptidase compare
AO353_07510 -0.9 -5.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_20660 -0.9 -2.7 pseudouridine synthase compare
AO353_02065 -0.9 -4.1 aspartate aminotransferase compare
AO353_26945 -0.9 -1.7 transcriptional regulator compare
AO353_28425 -0.9 -2.5 TetR family transcriptional regulator compare
AO353_09945 -0.9 -2.8 LysR family transcriptional regulator compare
AO353_19530 -0.9 -1.7 quinohemoprotein amine dehydrogenase compare
AO353_19840 -0.9 -2.5 hypothetical protein compare
AO353_08485 -0.9 -6.4 threonine dehydratase compare
AO353_03365 -0.8 -4.8 transcriptional regulator compare
AO353_04520 -0.8 -3.3 elongation factor 4 compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Histidine across organisms