Experiment set2IT040 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Histidine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_07645 +1.0 2.1 sarcosine oxidase subunit gamma compare
AO353_12240 +1.0 3.9 histidine utilization repressor compare
AO353_24415 +1.0 2.7 glutamine ABC transporter ATP-binding protein compare
AO353_12580 +0.9 2.1 type II secretory protein PulK compare
AO353_12790 +0.9 2.3 hypothetical protein compare
AO353_06725 +0.8 2.3 hypothetical protein compare
AO353_04190 +0.8 2.2 glycerol-3-phosphate dehydrogenase compare
AO353_09745 +0.8 1.7 hypothetical protein compare
AO353_26525 +0.8 1.6 hypothetical protein compare
AO353_01795 +0.8 1.8 hypothetical protein compare
AO353_15480 +0.8 1.9 hypothetical protein compare
AO353_20000 +0.8 2.5 phosphoribosyltransferase compare
AO353_17100 +0.7 2.5 hypothetical protein compare
AO353_00235 +0.7 2.5 transcriptional regulator compare
AO353_11340 +0.7 1.8 MarR family transcriptional regulator compare
AO353_10780 +0.7 1.5 DNA-binding protein compare
AO353_13920 +0.7 1.9 dihydroxyacetone kinase compare
AO353_19505 +0.7 2.3 FAD-dependent oxidoreductase compare
AO353_24745 +0.7 1.7 hypothetical protein compare
AO353_28640 +0.7 2.7 hypothetical protein compare
AO353_27585 +0.7 1.9 DNA repair protein compare
AO353_22360 +0.7 2.0 ABC transporter ATP-binding protein compare
AO353_23245 +0.7 1.4 DNA-3-methyladenine glycosylase compare
AO353_16765 +0.6 2.1 hypothetical protein compare
AO353_08060 +0.6 1.9 hypothetical protein compare
AO353_27440 +0.6 2.8 hypothetical protein compare
AO353_13085 +0.6 2.4 histidine kinase compare
AO353_22195 +0.6 1.4 metal ABC transporter permease compare
AO353_28295 +0.6 1.3 GNAT family acetyltransferase compare
AO353_25320 +0.6 2.0 phosphoribosyl-dephospho-CoA transferase compare
AO353_16195 +0.6 1.5 DNA mismatch repair protein MutT compare
AO353_26045 +0.6 1.2 hypothetical protein compare
AO353_11190 +0.6 4.6 ABC transporter compare
AO353_03605 +0.6 1.1 FmdB family transcriptional regulator compare
AO353_19770 +0.6 1.1 peptidase compare
AO353_17935 +0.6 1.5 hypothetical protein compare
AO353_07445 +0.6 1.3 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_23440 +0.6 1.5 hypothetical protein compare
AO353_16615 +0.5 4.6 RNA polymerase sigma factor RpoS compare
AO353_19685 +0.5 1.6 alkylhydroperoxidase compare
AO353_08775 +0.5 1.3 cell division protein ZapA compare
AO353_09770 +0.5 2.3 hypothetical protein compare
AO353_02570 +0.5 1.2 hypothetical protein compare
AO353_12880 +0.5 1.4 ADP-heptose--LPS heptosyltransferase compare
AO353_16355 +0.5 2.5 TetR family transcriptional regulator compare
AO353_27950 +0.5 1.4 hypothetical protein compare
AO353_13965 +0.5 2.9 large-conductance mechanosensitive channel compare
AO353_22510 +0.5 2.0 hypothetical protein compare
AO353_13585 +0.5 2.0 predicted copper homeostasis protein (from data) compare
AO353_03515 +0.5 0.8 cold-shock protein compare
AO353_19810 +0.5 1.5 filamentous hemagglutinin compare
AO353_12995 +0.5 2.4 LysR family transcriptional regulator compare
AO353_26080 +0.5 1.6 hypothetical protein compare
AO353_00195 +0.5 1.3 virion morphogenesis protein compare
AO353_10085 +0.5 1.9 pyridoxamine kinase compare
AO353_09775 +0.5 1.7 hypothetical protein compare
AO353_24000 +0.5 2.0 isochorismate synthase compare
AO353_21640 +0.5 1.2 cobalt transporter compare
AO353_27430 +0.5 1.9 hypothetical protein compare
AO353_14085 +0.5 1.9 hypothetical protein compare
AO353_22955 +0.5 1.3 tRNA hydroxylase compare
AO353_10225 +0.5 2.4 methyltransferase compare
AO353_02595 +0.5 1.7 cobalamin synthase compare
AO353_05880 +0.5 1.3 plasmid stabilization protein compare
AO353_11945 +0.5 0.8 4-oxalocrotonate tautomerase compare
AO353_23950 +0.5 1.6 hypothetical protein compare
AO353_17880 +0.5 1.9 hypothetical protein compare
AO353_25660 +0.5 1.8 ABC transporter substrate-binding protein compare
AO353_20840 +0.5 1.3 ribose pyranase compare
AO353_28220 +0.5 2.2 hydroxyacid dehydrogenase compare
AO353_04240 +0.4 0.7 chemotaxis protein CheW compare
AO353_23835 +0.4 1.5 hypothetical protein compare
AO353_04325 +0.4 1.1 hypothetical protein compare
AO353_17850 +0.4 1.3 SAM-dependent methyltransferase compare
AO353_11180 +0.4 4.0 large adhesive protein compare
AO353_23350 +0.4 1.3 hypothetical protein compare
AO353_11455 +0.4 1.3 hypothetical protein compare
AO353_21595 +0.4 2.4 serine/threonine protein kinase compare
AO353_18840 +0.4 1.5 flagellar biosynthesis protein FlhB compare
AO353_07270 +0.4 1.3 transcriptional regulator compare
AO353_19605 +0.4 1.1 hypothetical protein compare
AO353_00945 +0.4 2.5 oxidoreductase compare
AO353_16645 +0.4 1.4 hypothetical protein compare
AO353_20425 +0.4 1.0 ArsC family transcriptional regulator compare
AO353_25885 +0.4 1.7 sugar ABC transporter permease compare
AO353_10990 +0.4 2.9 glutamate:protein symporter compare
AO353_28930 +0.4 1.0 hypothetical protein compare
AO353_09875 +0.4 1.0 hypothetical protein compare
AO353_15505 +0.4 3.3 LysR family transcriptional regulator compare
AO353_14955 +0.4 1.1 hypothetical protein compare
AO353_28375 +0.4 2.5 MFS transporter compare
AO353_05065 +0.4 2.3 phosphate acetyltransferase compare
AO353_02655 +0.4 2.5 peptidase P60 compare
AO353_01595 +0.4 0.9 Flp pilus assembly protein CpaB compare
AO353_23075 +0.4 2.7 lysine transporter LysE compare
AO353_17085 +0.4 1.2 hypothetical protein compare
AO353_02600 +0.4 1.1 alpha-ribazole phosphatase compare
AO353_11185 +0.4 3.4 channel protein TolC compare
AO353_10095 +0.4 2.5 cobalamin biosynthesis protein CobW compare
AO353_22370 +0.4 1.5 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_11050 +0.4 1.4 hypothetical protein compare
AO353_08620 +0.4 1.0 hypothetical protein compare
AO353_15395 +0.4 1.1 transcriptional regulator compare
AO353_27855 +0.4 0.8 MarR family transcriptional regulator compare
AO353_21290 +0.4 1.2 hypothetical protein compare
AO353_03110 +0.4 1.9 hydrolase compare
AO353_04060 +0.4 2.2 NADH:quinone oxidoreductase compare
AO353_17590 +0.4 2.3 transcriptional regulator compare
AO353_21240 +0.4 1.9 undecaprenyl-phosphate glucose phosphotransferase compare
AO353_18560 +0.4 1.1 class I peptide chain release factor compare
AO353_18600 +0.4 1.6 flagellar basal-body rod protein FlgG compare
AO353_08005 +0.4 2.0 thioesterase compare
AO353_26950 +0.4 1.6 hypothetical protein compare
AO353_07625 +0.4 1.6 RNA polymerase subunit sigma-70 compare
AO353_05920 +0.4 2.0 hypothetical protein compare
AO353_13300 +0.4 1.2 LOG family protein compare
AO353_27500 +0.4 0.9 hypothetical protein compare
AO353_26440 +0.4 1.3 hypothetical protein compare
AO353_00205 +0.4 1.8 head protein compare
AO353_09575 +0.4 2.3 hypothetical protein compare
AO353_19710 +0.4 2.1 hypothetical protein compare
AO353_08690 +0.4 2.3 acetylornithine deacetylase compare
AO353_12335 +0.4 2.5 chemotaxis protein compare
AO353_03140 +0.4 1.6 hypothetical protein compare
AO353_13740 +0.4 1.7 MFS transporter compare
AO353_01195 +0.4 2.3 hypothetical protein compare
AO353_26100 +0.4 1.0 lysozyme compare
AO353_24045 +0.4 1.7 iron ABC transporter ATP-binding protein compare
AO353_01055 +0.4 3.1 AraC family transcriptional regulator compare
AO353_14970 +0.4 1.5 hypothetical protein compare
AO353_11195 +0.4 3.1 hemolysin secretion protein D compare
AO353_03330 +0.4 1.4 aldehyde dehydrogenase compare
AO353_19680 +0.4 2.0 mechanosensitive ion channel protein MscS compare
AO353_11485 +0.4 1.7 hypothetical protein compare
AO353_05340 +0.4 1.7 histidine kinase compare
AO353_18465 +0.4 1.9 phosphohydrolase compare
AO353_09765 +0.4 1.6 hypothetical protein compare
AO353_23385 +0.4 2.1 trans-2-enoyl-CoA reductase compare
AO353_09565 +0.4 2.3 type VI secretion protein compare
AO353_00605 +0.4 2.0 cytochrome C oxidase Cbb3 compare
AO353_22025 +0.4 1.1 iron-sulfur cluster repair di-iron protein compare
AO353_04075 +0.4 2.0 electron transporter RnfG compare
AO353_19035 +0.4 2.4 pilus assembly protein PilZ compare
AO353_02225 +0.4 1.6 LuxR family transcriptional regulator compare
AO353_00665 +0.3 1.3 adenine phosphoribosyltransferase compare
AO353_24970 +0.3 1.6 formate dehydrogenase compare
AO353_02160 +0.3 1.9 polyphosphate kinase compare
AO353_23870 +0.3 1.4 DNA-binding protein compare
AO353_24520 +0.3 1.8 short-chain dehydrogenase compare
AO353_11320 +0.3 1.9 hypothetical protein compare
AO353_24960 +0.3 2.0 sulfate ABC transporter substrate-binding protein compare
AO353_07580 +0.3 1.5 glutathione S-transferase compare
AO353_02935 +0.3 1.8 ribose-phosphate pyrophosphokinase compare
AO353_28215 +0.3 2.0 4-aminobutyrate aminotransferase compare
AO353_25910 +0.3 1.6 Fructokinase (EC 2.7.1.4) (from data) compare
AO353_22010 +0.3 1.4 hypothetical protein compare
AO353_23985 +0.3 1.6 isochorismate-pyruvate lyase compare
AO353_27275 +0.3 1.6 hypothetical protein compare
AO353_07755 +0.3 1.8 betainyl-CoA thiolase (EC 3.1.2.-) (from data) compare
AO353_22765 +0.3 1.6 addiction module antitoxin compare
AO353_21905 +0.3 1.0 hypothetical protein compare
AO353_26555 +0.3 2.6 DHH family protein compare
AO353_27385 +0.3 1.6 hypothetical protein compare
AO353_12155 +0.3 2.0 penicillin-binding protein compare
AO353_19310 +0.3 0.8 enoyl-CoA hydratase compare
AO353_19625 +0.3 1.3 isopentenyl-diphosphate delta-isomerase compare
AO353_00350 +0.3 1.7 copper-binding protein compare
AO353_03130 +0.3 1.1 hypothetical protein compare
AO353_24255 +0.3 1.2 hypothetical protein compare
AO353_24820 +0.3 1.6 histidine kinase compare
AO353_15000 +0.3 1.1 glycerate dehydrogenase compare
AO353_16860 +0.3 1.7 hypothetical protein compare
AO353_08195 +0.3 1.5 non-canonical purine NTP pyrophosphatase compare
AO353_22830 +0.3 1.3 cupin compare
AO353_26260 +0.3 2.0 hypothetical protein compare
AO353_27940 +0.3 1.5 succinyl-CoA--3-ketoacid-CoA transferase compare
AO353_01010 +0.3 1.9 cell envelope protein SmpA compare
AO353_27100 +0.3 2.0 hypothetical protein compare
AO353_17380 +0.3 1.3 hypothetical protein compare
AO353_04650 +0.3 0.8 molybdenum cofactor biosynthesis protein MoaE compare
AO353_02995 +0.3 2.2 succinylglutamate desuccinylase compare
AO353_18675 +0.3 1.7 flagellar hook-basal body protein FliE compare
AO353_15500 +0.3 2.6 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_22305 +0.3 0.9 LysR family transcriptional regulator compare
AO353_27380 +0.3 0.9 pyocin R2, holin compare
AO353_27445 +0.3 1.3 hypothetical protein compare
AO353_24685 +0.3 1.0 hypothetical protein compare
AO353_23395 +0.3 1.6 hypothetical protein compare
AO353_05435 +0.3 1.9 choline ABC transporter permease compare
AO353_04810 +0.3 0.7 hypothetical protein compare
AO353_04090 +0.3 0.9 leucyl-tRNA synthetase compare
AO353_28525 +0.3 2.0 oxidoreductase compare
AO353_25050 +0.3 1.4 AraC family transcriptional regulator compare
AO353_13885 +0.3 1.7 bile acid:sodium symporter compare
AO353_07595 +0.3 1.3 transcriptional regulator compare
AO353_22120 +0.3 1.3 cyclic pyranopterin phosphate synthase MoaA compare
AO353_18325 +0.3 0.9 hypothetical protein compare
AO353_21365 +0.3 1.7 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
AO353_25790 +0.3 2.0 heme utilization protein compare
AO353_14915 +0.3 0.9 (2Fe-2S)-binding protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Histidine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Histidine across organisms