Experiment set2IT040 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_1224 +2.0 12.3 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1601 +1.9 3.0 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2642 +1.9 4.3 flavodoxin (RefSeq) compare
Shew_2572 +1.8 7.6 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_3500 +1.7 4.2 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2049 +1.7 5.2 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_3660 +1.7 13.6 glutathione reductase (RefSeq) compare
Shew_1202 +1.5 7.6 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_3295 +1.4 7.6 AFG1 family ATPase (RefSeq) compare
Shew_0755 +1.4 3.0 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_3267 +1.4 6.2 sodium/hydrogen exchanger (RefSeq) compare
Shew_2320 +1.3 6.6 RNA methyltransferase (RefSeq) compare
Shew_1714 +1.3 2.5 alpha/beta hydrolase fold (RefSeq) compare
Shew_1819 +1.3 3.0 GntR family transcriptional regulator (RefSeq) compare
Shew_0462 +1.2 1.3 hypothetical protein (RefSeq) compare
Shew_1092 +1.2 5.0 amino acid carrier protein (RefSeq) compare
Shew_3681 +1.2 9.0 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0127 +1.2 4.6 LexA repressor (RefSeq) compare
Shew_0570 +1.2 1.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_2890 +1.2 1.4 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_2668 +1.2 7.3 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_3682 +1.2 8.0 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1995 +1.2 1.7 PP-loop domain-containing protein (RefSeq) compare
Shew_1341 +1.1 3.0 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_3131 +1.1 5.5 poly(A) polymerase (RefSeq) compare
Shew_1731 +1.1 0.9 histidine triad (HIT) protein (RefSeq) compare
Shew_3378 +1.1 1.2 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_2153 +1.1 1.4 LysR family transcriptional regulator (RefSeq) compare
Shew_1298 guaA +1.1 6.5 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_3710 tdh +1.1 7.5 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_2646 +1.0 0.9 hypothetical protein (RefSeq) compare
Shew_1058 +1.0 5.1 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_3483 dut +1.0 1.2 deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) compare
Shew_2389 +1.0 3.4 hypothetical protein (RefSeq) compare
Shew_1851 +1.0 0.8 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_0057 +0.9 3.1 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_2667 +0.9 6.8 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_3442 +0.9 2.3 hypothetical protein (RefSeq) compare
Shew_3709 +0.9 6.0 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_0620 +0.9 1.5 ion transport 2 domain-containing protein (RefSeq) compare
Shew_1518 +0.9 1.2 hypothetical protein (RefSeq) compare
Shew_1078 +0.9 6.2 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_1992 +0.9 2.1 hypothetical protein (RefSeq) compare
Shew_2458 +0.9 0.9 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_1227 +0.9 1.2 glutamate--cysteine ligase (RefSeq) compare
Shew_3273 +0.9 3.6 hypothetical protein (RefSeq) compare
Shew_1257 +0.9 3.2 DNA repair protein RadC (RefSeq) compare
Shew_0097 +0.9 2.9 two component transcriptional regulator (RefSeq) compare
Shew_0296 +0.9 0.7 heat shock protein Hsp20 (RefSeq) compare
Shew_0718 +0.9 2.9 cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq) compare
Shew_1514 upp +0.9 2.7 uracil phosphoribosyltransferase (RefSeq) compare
Shew_1820 prpB +0.9 4.0 2-methylisocitrate lyase (RefSeq) compare
Shew_2665 +0.8 6.6 beta-ketoacyl synthase (RefSeq) compare
Shew_2554 +0.8 1.1 outer membrane protein W (RefSeq) compare
Shew_2656 +0.8 3.7 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_2061 +0.8 1.2 radical SAM domain-containing protein (RefSeq) compare
Shew_2573 +0.8 4.9 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_0799 +0.8 1.7 MarR family transcriptional regulator (RefSeq) compare
Shew_0396 +0.8 1.5 methylation site containing protein (RefSeq) compare
Shew_2571 +0.8 3.9 propionyl-CoA carboxylase (RefSeq) compare
Shew_2785 +0.8 0.8 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_0438 +0.8 0.7 GumN family protein (RefSeq) compare
Shew_2327 +0.8 0.5 hypothetical protein (RefSeq) compare
Shew_1432 +0.8 1.2 ferredoxin-type protein NapF (RefSeq) compare
Shew_0421 +0.8 0.9 phage shock protein C, PspC (RefSeq) compare
Shew_1445 +0.8 0.7 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) compare
Shew_0614 +0.8 3.6 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_2544 +0.8 1.9 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_0738 +0.8 0.8 NTPase (RefSeq) compare
Shew_3432 pdhR +0.8 1.5 transcriptional regulator PdhR (RefSeq) compare
Shew_0722 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_1050 +0.8 2.7 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2147 +0.8 1.0 hypothetical protein (RefSeq) compare
Shew_1186 +0.8 1.9 transcriptional regulator NrdR (RefSeq) compare
Shew_0613 +0.8 2.6 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_0889 +0.8 1.2 hypothetical protein (RefSeq) compare
Shew_2664 +0.8 2.9 transcriptional regulator, putative (RefSeq) compare
Shew_2199 +0.8 2.4 histidinol-phosphate aminotransferase (RefSeq) compare
Shew_3377 +0.8 0.3 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_0647 +0.7 2.0 hypothetical protein (RefSeq) compare
Shew_1563 +0.7 4.3 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_0788 +0.7 1.6 dienelactone hydrolase (RefSeq) compare
Shew_2106 +0.7 2.9 hypothetical protein (RefSeq) compare
Shew_0450 +0.7 4.3 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_1531 grxA +0.7 1.7 glutaredoxin 1 (RefSeq) compare
Shew_1822 +0.7 1.9 aconitate hydratase (RefSeq) compare
Shew_2654 queF +0.7 2.0 7-cyano-7-deazaguanine reductase (RefSeq) compare
Shew_2444 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_1776 +0.7 2.2 acetolactate synthase 3 catalytic subunit (RefSeq) compare
Shew_2652 +0.7 1.6 hypothetical protein (RefSeq) compare
Shew_2724 +0.7 2.4 indigoidine synthase A family protein (RefSeq) compare
Shew_2350 +0.7 1.1 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_1281 +0.7 1.4 hypothetical protein (RefSeq) compare
Shew_0220 +0.7 2.6 phosphoglycolate phosphatase (RefSeq) compare
Shew_0086 +0.7 5.6 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_2666 +0.7 4.2 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_1812 +0.7 3.0 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_3683 +0.7 2.9 extracellular solute-binding protein (RefSeq) compare
Shew_3069 +0.7 0.9 5-formyltetrahydrofolate cyclo-ligase (RefSeq) compare
Shew_2406 +0.7 1.1 AraC family transcriptional regulator (RefSeq) compare
Shew_3687 +0.7 4.5 molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq) compare
Shew_0316 +0.7 2.2 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_3537 +0.7 1.3 hypothetical protein (RefSeq) compare
Shew_2402 +0.7 0.6 ABC transporter-related protein (RefSeq) compare
Shew_3225 +0.7 3.0 glutathione synthetase (RefSeq) compare
Shew_0199 +0.7 2.3 hypothetical protein (RefSeq) compare
Shew_3716 +0.6 2.0 cytochrome c, class I (RefSeq) compare
Shew_3686 +0.6 2.8 molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq) compare
Shew_3394 +0.6 0.5 MscS mechanosensitive ion channel (RefSeq) compare
Shew_1865 +0.6 1.8 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_2766 +0.6 2.3 thiamine biosynthesis protein ThiI (RefSeq) compare
Shew_1295 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_0897 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_1961 +0.6 1.6 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_3292 +0.6 1.1 hypothetical protein (RefSeq) compare
Shew_1673 fabG +0.6 0.7 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_2155 +0.6 1.4 4-hydroxyphenylpyruvate dioxygenase (RefSeq) compare
Shew_2014 +0.6 2.4 hypothetical protein (RefSeq) compare
Shew_0115 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_3487 pyrE +0.6 1.7 orotate phosphoribosyltransferase (RefSeq) compare
Shew_3063 +0.6 1.0 glycine cleavage system protein H (RefSeq) compare
Shew_1644 +0.6 0.5 DSBA oxidoreductase (RefSeq) compare
Shew_2115 +0.6 3.4 lytic transglycosylase, catalytic (RefSeq) compare
Shew_3695 +0.6 1.0 cytidyltransferase-like protein (RefSeq) compare
Shew_1122 +0.6 3.3 hypothetical protein (RefSeq) compare
Shew_3062 +0.6 4.1 glycine dehydrogenase (RefSeq) compare
Shew_1568 +0.6 2.2 arginyl-tRNA-protein transferase (RefSeq) compare
Shew_0372 +0.6 1.8 hypothetical protein (RefSeq) compare
Shew_2884 +0.6 0.9 glycine cleavage system regulatory protein-like protein (RefSeq) compare
Shew_2035 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_0860 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_1287 +0.6 1.8 hypothetical protein (RefSeq) compare
Shew_0805 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_2584 +0.6 4.0 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_3625 +0.6 1.8 sodium:dicarboxylate symporter (RefSeq) compare
Shew_0091 +0.6 3.1 molybdopterin biosynthesis MoaE (RefSeq) compare
Shew_2837 +0.6 0.5 transcription elongation factor GreA (RefSeq) compare
Shew_1782 +0.6 2.4 MarR family transcriptional regulator (RefSeq) compare
Shew_1059 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_3122 +0.6 0.6 PepSY-associated TM helix domain-containing protein (RefSeq) compare
Shew_1926 +0.6 1.4 transketolase, central region (RefSeq) compare
Shew_1488 +0.6 1.5 FAD linked oxidase domain-containing protein (RefSeq) compare
Shew_1356 +0.6 2.1 flagellin domain-containing protein (RefSeq) compare
Shew_1535 +0.6 1.8 fumarylacetoacetate (FAA) hydrolase (RefSeq) compare
Shew_3527 +0.6 1.0 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2803 +0.6 1.4 DNA-binding transcriptional regulator TorR (RefSeq) compare
Shew_1602 +0.6 1.1 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_2202 +0.6 0.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq) compare
Shew_1657 sucC +0.6 0.7 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_2728 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_3498 rpoZ +0.6 1.4 DNA-directed RNA polymerase subunit omega (RefSeq) compare
Shew_1811 +0.6 3.1 hypothetical protein (RefSeq) compare
Shew_0055 +0.6 4.2 hypothetical protein (RefSeq) compare
Shew_1300 +0.6 2.1 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1684 +0.6 2.1 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_0388 +0.6 2.1 MSHA biogenesis protein MshK (RefSeq) compare
Shew_2414 +0.6 1.6 ATP-NAD/AcoX kinase (RefSeq) compare
Shew_2950 +0.6 1.1 RluA family pseudouridine synthase (RefSeq) compare
Shew_3064 gcvT +0.6 3.4 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_0678 +0.6 1.6 protoporphyrinogen oxidase (RefSeq) compare
Shew_3528 +0.5 1.8 rhodanese domain-containing protein (RefSeq) compare
Shew_0459 +0.5 2.1 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_1929 +0.5 2.0 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_0261 +0.5 0.4 hypothetical protein (RefSeq) compare
Shew_2196 +0.5 1.5 helicase c2 (RefSeq) compare
Shew_0136 +0.5 2.9 stearoyl-CoA 9-desaturase (RefSeq) compare
Shew_3265 +0.5 0.9 CutA1 divalent ion tolerance protein (RefSeq) compare
Shew_3080 +0.5 1.8 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_0698 +0.5 2.4 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_1014 +0.5 0.5 XRE family transcriptional regulator (RefSeq) compare
Shew_1682 +0.5 0.8 ribonuclease H (RefSeq) compare
Shew_0763 +0.5 2.9 putative PAS/PAC sensor protein (RefSeq) compare
Shew_2906 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_0098 +0.5 2.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0828 +0.5 0.5 LysR family transcriptional regulator (RefSeq) compare
Shew_3684 +0.5 3.7 binding-protein-dependent transport systems inner membrane component (RefSeq) compare
Shew_0056 +0.5 4.1 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) compare
Shew_3542 +0.5 1.6 D-tyrosyl-tRNA deacylase (RefSeq) compare
Shew_1797 +0.5 0.8 paraquat-inducible protein A (RefSeq) compare
Shew_0412 +0.5 1.8 secretion protein HlyD family protein (RefSeq) compare
Shew_3404 +0.5 0.6 NosL family protein (RefSeq) compare
Shew_1869 +0.5 2.2 hypothetical protein (RefSeq) compare
Shew_2174 +0.5 0.4 fatty acid metabolism regulator (RefSeq) compare
Shew_0054 +0.5 2.1 hypothetical protein (RefSeq) compare
Shew_1457 +0.5 1.8 response regulator receiver modulated CheW protein (RefSeq) compare
Shew_2053 +0.5 1.9 peptidyl-dipeptidase A (RefSeq) compare
Shew_0728 +0.5 3.2 dihydroorotase (RefSeq) compare
Shew_0854 +0.5 2.2 hypothetical protein (RefSeq) compare
Shew_2481 +0.5 2.1 porin (RefSeq) compare
Shew_2148 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_2453 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_0414 +0.5 3.0 ABC-2 type transporter (RefSeq) compare
Shew_0480 +0.5 1.0 Sel1 domain-containing protein (RefSeq) compare
Shew_2919 +0.5 0.7 translation-associated GTPase (RefSeq) compare
Shew_1884 +0.5 1.5 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_2175 nhaB +0.5 2.4 sodium/proton antiporter (RefSeq) compare
Shew_1979 +0.5 0.6 putative dienelactone hydrolase-related enzyme (RefSeq) compare
Shew_2618 +0.5 1.7 diguanylate cyclase (RefSeq) compare
Shew_0695 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_3685 +0.5 2.6 ABC transporter-related protein (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments