Experiment set2IT040 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +1.1 9.4 acetate--CoA ligase family protein compare
MMP_RS07835 +0.8 3.3 TldD/PmbA family protein compare
MMP_RS01650 +0.8 1.3 sulfurtransferase TusA family protein compare
MMP_RS05975 +0.8 2.1 hypothetical protein compare
MMP_RS00130 +0.7 1.3 nickel-responsive transcriptional regulator NikR compare
MMP_RS07860 +0.7 0.6 hypothetical protein compare
MMP_RS08660 +0.6 3.9 DHH family phosphoesterase compare
MMP_RS05535 +0.6 3.0 hypothetical protein compare
MMP_RS02745 +0.6 2.4 hypothetical protein compare
MMP_RS01435 +0.6 3.2 DMT family transporter compare
MMP_RS07120 +0.6 3.8 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS05675 +0.5 1.6 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS06910 +0.5 3.9 RlmF-related methyltransferase compare
MMP_RS00080 +0.5 3.0 RecB-family nuclease compare
MMP_RS08930 +0.5 0.9 hypothetical protein compare
MMP_RS09025 +0.5 1.0 hypothetical protein compare
MMP_RS07840 +0.5 2.3 ribonuclease III compare
MMP_RS07560 +0.5 2.9 prefoldin subunit alpha compare
MMP_RS00705 +0.5 1.4 hypothetical protein compare
MMP_RS06905 +0.5 1.4 hypothetical protein compare
MMP_RS06975 +0.5 1.4 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS06610 +0.5 1.5 DUF2334 domain-containing protein compare
MMP_RS01785 +0.5 3.7 hypothetical protein compare
MMP_RS07650 +0.5 3.4 TldD/PmbA family protein compare
MMP_RS00565 +0.5 2.3 CBS domain-containing protein compare
MMP_RS02175 +0.4 0.5 DUF1611 domain-containing protein compare
MMP_RS00675 +0.4 0.6 nitroreductase family protein compare
MMP_RS06335 +0.4 1.8 HAD family hydrolase compare
MMP_RS08775 +0.4 2.2 methanogenesis marker 9 domain-containing protein compare
MMP_RS08315 +0.4 1.8 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS07765 +0.4 2.7 sodium:alanine symporter family protein compare
MMP_RS02595 +0.4 1.0 putative zinc-binding protein compare
MMP_RS07130 +0.4 3.2 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS08500 +0.4 2.7 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS06155 +0.4 1.6 DUF4186 domain-containing protein compare
MMP_RS05970 +0.4 1.3 class II SORL domain-containing protein compare
MMP_RS07125 +0.4 2.1 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS06860 +0.4 1.2 4Fe-4S binding protein compare
MMP_RS08980 +0.4 2.1 hypothetical protein compare
MMP_RS01655 +0.4 1.2 DsrE family protein compare
MMP_RS03150 +0.4 2.8 phosphoglycerate mutase compare
MMP_RS07135 +0.4 2.3 coenzyme F420 hydrogenase subunit beta compare
MMP_RS08400 +0.4 1.7 MJ0307 family thioredoxin compare
MMP_RS06745 +0.4 1.9 DUF2119 domain-containing protein compare
MMP_RS03215 +0.4 2.5 MBL fold metallo-hydrolase compare
MMP_RS01260 +0.4 2.2 HDIG domain-containing protein compare
MMP_RS08395 +0.4 2.1 DsrE family protein compare
MMP_RS02790 +0.3 0.7 class III signal peptide-containing protein compare
MMP_RS05720 +0.3 1.0 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS08235 +0.3 2.6 hypothetical protein compare
MMP_RS07815 +0.3 0.8 DUF2120 domain-containing protein compare
MMP_RS08275 +0.3 2.4 hypothetical protein compare
MMP_RS07550 +0.3 2.2 L-serine ammonia-lyase iron-sulfur-dependent subunit alpha compare
MMP_RS08750 +0.3 1.5 hypothetical protein compare
MMP_RS08085 +0.3 2.1 hypothetical protein compare
MMP_RS07155 +0.3 2.2 MFS transporter compare
MMP_RS07970 +0.3 1.2 hypothetical protein compare
MMP_RS08310 +0.3 1.0 TMEM165/GDT1 family protein compare
MMP_RS01525 +0.3 1.0 nucleoside-diphosphate kinase compare
MMP_RS03520 +0.3 0.7 YwbE family protein compare
MMP_RS05110 +0.3 2.2 16S ribosomal RNA methyltransferase A compare
MMP_RS07850 +0.3 1.2 prephenate dehydratase compare
MMP_RS05660 +0.3 2.1 phosphate ABC transporter substrate-binding protein compare
MMP_RS04030 +0.3 2.0 hypothetical protein compare
MMP_RS05940 +0.3 2.0 corrinoid protein compare
MMP_RS01570 +0.3 0.7 hypothetical protein compare
MMP_RS04480 +0.3 2.6 lysine 2 3-aminomutase compare
MMP_RS08205 +0.3 2.0 stage II sporulation protein M compare
MMP_RS07095 +0.3 1.4 PspC domain-containing protein compare
MMP_RS06045 +0.3 2.1 DNA polymerase compare
MMP_RS07435 +0.3 0.7 GMP synthase subunit A compare
MMP_RS06190 +0.3 1.7 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMP_RS06965 +0.3 1.9 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS01430 +0.3 2.3 mechanosensitive ion channel family protein compare
MMP_RS06575 +0.3 1.3 fluoride efflux transporter CrcB compare
MMP_RS00660 +0.3 2.2 alkaline phosphatase family protein compare
MMP_RS07715 +0.3 1.8 YfcE family phosphodiesterase compare
MMP_RS02590 +0.3 1.7 low molecular weight phosphatase family protein compare
MMP_RS09050 +0.3 1.4 CAP domain-containing protein compare
MMP_RS01965 +0.3 1.4 DUF1616 domain-containing protein compare
MMP_RS06930 +0.3 2.2 MBL fold metallo-hydrolase compare
MMP_RS07615 +0.3 1.6 energy-coupling factor ABC transporter permease compare
MMP_RS00630 +0.3 1.9 ECF transporter S component compare
MMP_RS08260 +0.2 1.7 DUF99 family protein compare
MMP_RS03245 +0.2 1.3 DNA repair and recombination protein RadB compare
MMP_RS09030 +0.2 1.5 hypothetical protein compare
MMP_RS02320 +0.2 2.1 glutamate-cysteine ligase family protein compare
MMP_RS01765 +0.2 1.0 HIT family protein compare
MMP_RS02290 +0.2 1.6 MBL fold metallo-hydrolase compare
MMP_RS02680 +0.2 1.5 ABC transporter permease compare
MMP_RS08555 +0.2 1.1 hypothetical protein compare
MMP_RS08625 +0.2 2.1 type II/IV secretion system ATPase subunit compare
MMP_RS05695 +0.2 1.8 phospholipase D-like domain-containing protein compare
MMP_RS00545 +0.2 1.5 XRE family transcriptional regulator compare
MMP_RS00280 +0.2 1.9 DUF2118 domain-containing protein compare
MMP_RS07770 +0.2 1.5 alanine racemase compare
MMP_RS04100 +0.2 1.0 hypothetical protein compare
MMP_RS08475 +0.2 1.3 ABC transporter permease compare
MMP_RS07140 +0.2 2.0 TIGR00341 family protein compare
MMP_RS08090 +0.2 0.8 hypothetical protein compare
MMP_RS04145 +0.2 0.7 hypothetical protein compare
MMP_RS08835 +0.2 1.6 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS06990 +0.2 1.1 CatB-related O-acetyltransferase compare
MMP_RS04520 +0.2 1.0 nucleoside deaminase compare
MMP_RS03775 +0.2 0.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS07620 +0.2 1.2 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS01055 +0.2 1.1 hypothetical protein compare
MMP_RS01635 +0.2 1.7 thiamine pyrophosphate-dependent enzyme compare
MMP_RS08620 +0.2 1.6 flagellar accessory protein FlaH compare
MMP_RS08480 +0.2 2.0 molybdate ABC transporter substrate-binding protein compare
MMP_RS00155 +0.2 1.4 heavy metal-binding domain-containing protein compare
MMP_RS05435 +0.2 1.4 5'/3'-nucleotidase SurE compare
MMP_RS06520 +0.2 1.4 DUF1786 domain-containing protein compare
MMP_RS02510 +0.2 1.6 site-specific integrase compare
MMP_RS01155 +0.2 1.7 XRE family transcriptional regulator compare
MMP_RS05980 +0.2 1.5 ferritin compare
MMP_RS08610 +0.2 1.6 flagellar protein F compare
MMP_RS07805 +0.2 1.7 ABC transporter permease compare
MMP_RS05715 +0.2 1.5 hypothetical protein compare
MMP_RS06590 +0.2 0.8 GNAT family N-acetyltransferase compare
MMP_RS05830 +0.2 0.8 peptidyl-prolyl cis-trans isomerase compare
MMP_RS07890 +0.2 0.9 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS00055 +0.2 1.7 DUF2254 domain-containing protein compare
MMP_RS01630 +0.2 1.8 N-glycosylase/DNA lyase compare
MMP_RS08670 +0.2 1.5 metallophosphoesterase compare
MMP_RS06655 +0.2 1.7 glycoside hydrolase family 15 protein compare
MMP_RS00085 +0.2 1.6 DNA cytosine methyltransferase compare
MMP_RS06300 +0.2 1.6 ABC transporter substrate-binding protein compare
MMP_RS07925 +0.2 1.1 haloacid dehalogenase compare
MMP_RS02805 +0.2 0.5 HEPN domain-containing protein compare
MMP_RS02370 +0.2 0.9 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS02675 +0.2 0.8 hypothetical protein compare
MMP_RS08175 +0.2 1.3 7-cyano-7-deazaguanine synthase compare
MMP_RS02300 +0.2 1.1 NAD(P)H-dependent oxidoreductase compare
MMP_RS02375 +0.2 1.4 hypothetical protein compare
MMP_RS00560 +0.2 1.3 cation:proton antiporter compare
MMP_RS00105 +0.2 1.4 hypothetical protein compare
MMP_RS08325 +0.2 1.6 hypothetical protein compare
MMP_RS02495 +0.2 0.8 hypothetical protein compare
MMP_RS02890 +0.2 1.3 TIGR00296 family protein compare
MMP_RS08640 +0.2 1.5 TIM barrel protein compare
MMP_RS05900 +0.2 1.4 tetratricopeptide repeat protein compare
MMP_RS08265 +0.2 1.0 rubrerythrin compare
MMP_RS01675 +0.2 0.5 hypothetical protein compare
MMP_RS09065 +0.2 1.6 hypothetical protein compare
MMP_RS08700 +0.2 1.4 hypothetical protein compare
MMP_RS08285 +0.2 1.2 serine/threonine protein kinase compare
MMP_RS02025 +0.2 1.4 DNA-directed DNA polymerase compare
MMP_RS07985 +0.2 1.6 nitroreductase family protein compare
MMP_RS08280 +0.2 0.7 proteasome assembly chaperone family protein compare
MMP_RS03820 +0.2 1.2 EamA family transporter compare
MMP_RS02580 +0.2 1.0 cupin domain-containing protein compare
MMP_RS08410 +0.2 1.2 DUF169 domain-containing protein compare
MMP_RS01420 +0.2 0.5 hypothetical protein compare
MMP_RS07855 +0.2 1.3 class I SAM-dependent methyltransferase compare
MMP_RS05355 +0.2 0.3 hypothetical protein compare
MMP_RS00375 +0.2 1.3 ammonium transporter compare
MMP_RS07915 +0.2 1.0 DUF4870 domain-containing protein compare
MMP_RS02325 +0.2 1.1 epoxyqueuosine reductase compare
MMP_RS07590 +0.2 1.3 hypothetical protein compare
MMP_RS07595 +0.2 1.4 hypothetical protein compare
MMP_RS06660 +0.2 1.3 glycosyltransferase family 4 protein compare
MMP_RS08380 +0.2 0.8 phosphatase PAP2 family protein compare
MMP_RS00800 +0.2 1.3 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS01095 +0.2 0.9 iron ABC transporter permease compare
MMP_RS06490 +0.2 1.0 hypothetical protein compare
MMP_RS08850 +0.2 1.5 hypothetical protein compare
MMP_RS01160 +0.2 1.3 DMT family transporter compare
MMP_RS03865 +0.2 1.3 aspartate/glutamate racemase family protein compare
MMP_RS01550 +0.2 1.0 DUF1624 domain-containing protein compare
MMP_RS04515 +0.2 1.1 betaine/proline/choline family ABC transporter ATP-binding protein compare
MMP_RS06585 +0.2 0.5 DMT family protein compare
MMP_RS08160 +0.2 1.2 EamA family transporter compare
MMP_RS07145 +0.2 0.9 AmmeMemoRadiSam system protein B compare
MMP_RS07150 +0.2 1.0 MTH895/ArsE family thioredoxin-like protein compare
MMP_RS08405 +0.2 1.2 MFS transporter compare
MMP_RS08245 +0.2 0.9 DUF4013 domain-containing protein compare
MMP_RS06570 +0.2 0.4 DUF190 domain-containing protein compare
MMP_RS03890 +0.2 1.0 DUF2540 domain-containing protein compare
MMP_RS01990 +0.2 0.7 hypothetical protein compare
MMP_RS08130 +0.2 1.0 IGHMBP2 family helicase compare
MMP_RS06065 +0.2 1.4 iron ABC transporter substrate-binding protein compare
MMP_RS01620 +0.2 0.9 hypothetical protein compare
MMP_RS07100 +0.2 1.1 hypothetical protein compare
MMP_RS06165 +0.2 1.1 ABC transporter permease compare
MMP_RS07900 +0.2 0.4 YeeE/YedE family protein compare
MMP_RS00285 +0.2 1.0 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS00395 +0.2 0.4 MGMT family protein compare
MMP_RS04580 +0.2 1.2 hypothetical protein compare
MMP_RS00710 +0.2 0.7 hypothetical protein compare
MMP_RS03235 +0.2 0.8 tRNA pseudouridine(13) synthase TruD compare
MMP_RS00905 +0.2 1.1 phenylacetate--CoA ligase compare
MMP_RS02740 +0.2 0.8 hypothetical protein compare
MMP_RS06290 +0.2 0.8 DNA repair and recombination protein RadA compare
MMP_RS06140 +0.1 0.8 radical SAM protein compare
MMP_RS01460 +0.1 0.9 hypothetical protein compare
MMP_RS05275 +0.1 1.0 AI-2E family transporter compare
MMP_RS03350 +0.1 0.6 winged helix-turn-helix domain-containing protein compare
MMP_RS03740 +0.1 0.7 indolepyruvate oxidoreductase subunit beta compare
MMP_RS00185 +0.1 1.3 potassium channel protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms