Experiment set2IT040 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -7.9 -5.5 phosphoserine phosphatase SerB compare
ABZR87_RS14505 -7.3 -5.1 phosphoribosylanthranilate isomerase compare
ABZR87_RS14540 -6.9 -9.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14500 -6.6 -12.7 tryptophan synthase subunit beta compare
ABZR87_RS16170 -6.5 -6.3 argininosuccinate lyase compare
ABZR87_RS02160 -6.3 -7.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS09450 -6.1 -10.2 prephenate dehydratase compare
ABZR87_RS09465 -6.0 -9.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02595 -6.0 -13.6 shikimate kinase compare
ABZR87_RS14535 -5.8 -6.8 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS07360 -5.7 -17.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS06770 -5.7 -11.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS02155 -5.7 -10.6 anthranilate phosphoribosyltransferase compare
ABZR87_RS09445 -5.7 -17.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS08625 -5.6 -3.9 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02570 -5.6 -27.3 glutamate synthase-related protein compare
ABZR87_RS05200 -5.5 -21.8 homoserine O-acetyltransferase compare
ABZR87_RS02590 -5.3 -12.4 3-dehydroquinate synthase compare
ABZR87_RS22970 -5.2 -12.0 cystathionine gamma-synthase family protein compare
ABZR87_RS00835 -5.2 -5.0 argininosuccinate synthase compare
ABZR87_RS14530 -5.0 -10.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS16735 -4.9 -20.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS08630 -4.9 -13.6 dihydroorotase compare
ABZR87_RS05590 -4.9 -4.7 orotate phosphoribosyltransferase compare
ABZR87_RS09935 -4.9 -5.8 amino acid aminotransferase compare
ABZR87_RS02640 -4.8 -14.5 diaminopimelate decarboxylase compare
ABZR87_RS05170 -4.8 -3.3 acetylglutamate kinase compare
ABZR87_RS07380 -4.7 -18.8 FAD/FMN-binding oxidoreductase compare
ABZR87_RS02140 -4.7 -19.2 anthranilate synthase component I compare
ABZR87_RS16740 -4.7 -12.6 2-methylcitrate synthase compare
ABZR87_RS13790 -4.7 -11.5 chorismate synthase compare
ABZR87_RS14490 -4.6 -12.5 tryptophan synthase subunit alpha compare
ABZR87_RS14950 -4.6 -4.4 acetolactate synthase small subunit compare
ABZR87_RS02145 -4.5 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS08695 -4.5 -18.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS04865 -4.4 -6.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS16140 -4.3 -17.1 phosphoenolpyruvate carboxylase compare
ABZR87_RS09515 -4.2 -2.9 cysteine synthase CysM compare
ABZR87_RS00210 -4.2 -10.5 nitrite/sulfite reductase compare
ABZR87_RS16730 -4.1 -6.6 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS16745 -4.1 -10.5 methylisocitrate lyase compare
ABZR87_RS07060 -4.1 -15.2 RNA polymerase factor sigma-54 compare
ABZR87_RS01810 -4.1 -4.6 glutamate 5-kinase compare
ABZR87_RS02565 -4.1 -6.9 glutamate synthase subunit beta compare
ABZR87_RS10240 -4.0 -2.8 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS01110 -4.0 -10.0 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS11925 -4.0 -15.6 phosphoenolpyruvate synthase compare
ABZR87_RS00200 -4.0 -4.9 phosphoadenylyl-sulfate reductase compare
ABZR87_RS12790 -3.9 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS16750 -3.8 -12.0 propionate catabolism operon regulatory protein PrpR compare
ABZR87_RS08700 -3.7 -15.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS00190 -3.6 -11.9 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00285 -3.6 -2.4 acetylornithine transaminase compare
ABZR87_RS01645 -3.5 -8.0 type II 3-dehydroquinate dehydratase compare
ABZR87_RS07665 -3.4 -10.6 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS10400 -3.3 -3.9 hypothetical protein compare
ABZR87_RS14955 -3.3 -5.0 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS23095 -3.2 -2.0 MarR family transcriptional regulator compare
ABZR87_RS00195 -3.1 -2.8 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS11440 -3.0 -7.8 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS06705 -2.9 -14.4 glutamate--cysteine ligase compare
ABZR87_RS07050 -2.9 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS00185 -2.7 -4.7 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS14380 -2.6 -6.1 glutamate racemase compare
ABZR87_RS00325 -2.5 -3.1 peptidylprolyl isomerase compare
ABZR87_RS04785 -2.5 -9.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS02480 -2.5 -2.4 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS13300 -2.4 -10.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS16660 -2.3 -6.2 helix-turn-helix domain-containing protein compare
ABZR87_RS12795 -2.3 -6.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS10785 -2.2 -6.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS06495 -2.2 -3.3 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS05100 -2.2 -8.5 RNA polymerase-binding protein DksA compare
ABZR87_RS11125 -2.2 -7.8 cell division protein ZapE compare
ABZR87_RS00435 -2.1 -9.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS12785 -2.0 -7.8 endopeptidase La compare
ABZR87_RS05010 -2.0 -4.6 rod shape-determining protein RodA compare
ABZR87_RS06710 -2.0 -12.8 glutathione synthase compare
ABZR87_RS09895 -2.0 -2.0 DUF1841 family protein compare
ABZR87_RS14115 -1.9 -7.8 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS13290 -1.9 -8.3 3-ketoacyl-ACP reductase compare
ABZR87_RS13350 -1.8 -6.2 potassium transporter Kup compare
ABZR87_RS01605 -1.8 -8.4 shikimate dehydrogenase compare
ABZR87_RS05025 -1.8 -2.8 rod shape-determining protein MreC compare
ABZR87_RS11815 -1.7 -7.9 [protein-PII] uridylyltransferase compare
ABZR87_RS00220 -1.7 -5.4 CysB family HTH-type transcriptional regulator compare
ABZR87_RS10780 -1.7 -4.3 PD-(D/E)XK nuclease family protein compare
ABZR87_RS16180 -1.7 -3.9 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS11435 -1.6 -3.6 Mth938-like domain-containing protein compare
ABZR87_RS00205 -1.6 -1.9 DUF934 domain-containing protein compare
ABZR87_RS14375 -1.6 -3.3 fumarate hydratase compare
ABZR87_RS07635 -1.5 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS15440 -1.5 -3.0 ribonuclease G compare
ABZR87_RS06645 -1.5 -2.2 TlpA disulfide reductase family protein compare
ABZR87_RS07960 -1.5 -10.7 response regulator transcription factor compare
ABZR87_RS02575 -1.4 -5.2 transposase compare
ABZR87_RS21285 -1.4 -2.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS10550 -1.4 -2.1 outer membrane protein assembly factor BamC compare
ABZR87_RS13475 -1.4 -5.3 PAS domain S-box protein compare
ABZR87_RS03075 -1.4 -7.8 AGE family epimerase/isomerase compare
ABZR87_RS14360 -1.4 -7.4 acetate--CoA ligase compare
ABZR87_RS16845 -1.4 -1.4 hypothetical protein compare
ABZR87_RS16960 -1.3 -2.8 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS07625 -1.3 -2.1 Holliday junction branch migration protein RuvA compare
ABZR87_RS21940 -1.3 -1.2 hypothetical protein compare
ABZR87_RS05015 -1.3 -4.6 penicillin-binding protein 2 compare
ABZR87_RS07955 -1.3 -9.7 sensor histidine kinase compare
ABZR87_RS00215 -1.3 -3.7 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10170 -1.2 -5.3 RseA family anti-sigma factor compare
ABZR87_RS08970 -1.2 -5.6 protein TolQ compare
ABZR87_RS23180 -1.2 -1.6 ABC transporter ATP-binding protein compare
ABZR87_RS04995 -1.2 -3.3 DNA topoisomerase III compare
ABZR87_RS20500 -1.2 -1.4 hypothetical protein compare
ABZR87_RS05065 -1.2 -3.2 tyrosine recombinase XerC compare
ABZR87_RS13175 -1.1 -2.0 tRNA-Leu compare
ABZR87_RS11010 -1.1 -2.3 oxidative damage protection protein compare
ABZR87_RS04125 -1.1 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08750 -1.1 -5.2 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS07700 -1.1 -2.0 peptidylprolyl isomerase compare
ABZR87_RS22300 -1.1 -1.3 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS01165 -1.1 -2.0 VOC family protein compare
ABZR87_RS16250 -1.1 -2.8 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS01425 -1.1 -2.4 ferric iron uptake transcriptional regulator compare
ABZR87_RS05350 -1.0 -3.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS08710 -1.0 -7.1 sugar transferase compare
ABZR87_RS00970 -1.0 -1.3 molecular chaperone DnaJ compare
ABZR87_RS05580 -1.0 -2.2 diaminopimelate epimerase compare
ABZR87_RS09500 -1.0 -2.5 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS03420 -1.0 -1.4 type II secretion system minor pseudopilin GspI compare
ABZR87_RS16165 -0.9 -0.9 anti-sigma factor compare
ABZR87_RS04860 -0.9 -2.9 phage holin family protein compare
ABZR87_RS12300 -0.9 -3.6 muconolactone Delta-isomerase compare
ABZR87_RS10980 -0.9 -1.5 tRNA-Leu compare
ABZR87_RS09505 -0.9 -5.4 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS14745 -0.9 -1.4 urease subunit gamma compare
ABZR87_RS10195 -0.8 -2.4 signal peptidase I compare
ABZR87_RS14510 -0.8 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS08715 -0.8 -6.9 ATP-grasp domain-containing protein compare
ABZR87_RS01690 -0.8 -0.9 collagen-like triple helix repeat-containing protein compare
ABZR87_RS13415 -0.8 -3.7 IclR family transcriptional regulator compare
ABZR87_RS20785 -0.8 -0.9 DUF2783 domain-containing protein compare
ABZR87_RS06715 -0.8 -1.7 PTS sugar transporter subunit IIA compare
ABZR87_RS10565 -0.8 -2.4 cupin domain-containing protein compare
ABZR87_RS08990 -0.8 -2.7 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS08795 -0.8 -3.0 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS07735 -0.8 -3.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS08985 -0.8 -5.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS01640 -0.7 -2.3 TlpA disulfide reductase family protein compare
ABZR87_RS08505 -0.7 -0.8 CpaE family protein compare
ABZR87_RS11170 -0.7 -1.0 FixH family protein compare
ABZR87_RS20440 -0.7 -1.0 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS08640 -0.7 -3.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
ABZR87_RS09460 -0.7 -2.1 prephenate dehydrogenase compare
ABZR87_RS21345 -0.7 -2.6 tRNA-OTHER compare
ABZR87_RS11495 -0.7 -1.4 NADPH-dependent FMN reductase compare
ABZR87_RS08040 -0.7 -4.0 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS15715 -0.7 -4.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS06745 -0.7 -3.1 S41 family peptidase compare
ABZR87_RS00795 -0.7 -2.5 site-specific tyrosine recombinase XerD compare
ABZR87_RS00315 -0.7 -5.1 branched-chain amino acid ABC transporter substrate-binding protein compare
ABZR87_RS21815 -0.7 -0.7 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS08980 -0.7 -1.7 cell envelope integrity protein TolA compare
ABZR87_RS00300 -0.7 -4.2 ABC transporter ATP-binding protein compare
ABZR87_RS13705 -0.7 -0.7 integration host factor subunit alpha compare
ABZR87_RS10610 -0.7 -1.3 inositol monophosphatase family protein compare
ABZR87_RS15275 -0.7 -1.4 hypothetical protein compare
ABZR87_RS17355 -0.7 -3.2 hypothetical protein compare
ABZR87_RS18910 -0.6 -1.6 DUF2239 family protein compare
ABZR87_RS05140 -0.6 -1.0 ATP-binding protein compare
ABZR87_RS22625 -0.6 -2.2 hypothetical protein compare
ABZR87_RS10620 -0.6 -1.5 serine O-acetyltransferase compare
ABZR87_RS15810 -0.6 -2.3 hypothetical protein compare
ABZR87_RS12665 -0.6 -0.9 ABC transporter ATP-binding protein compare
ABZR87_RS08645 -0.6 -0.7 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS10175 -0.6 -2.8 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS10800 -0.6 -2.3 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS12295 -0.6 -1.4 muconate/chloromuconate family cycloisomerase compare
ABZR87_RS14235 -0.6 -3.2 formyltetrahydrofolate deformylase compare
ABZR87_RS22330 -0.6 -1.3 hypothetical protein compare
ABZR87_RS21365 -0.6 -0.9 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS07675 -0.6 -3.8 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS07215 -0.6 -1.2 hotdog family protein compare
ABZR87_RS00655 -0.6 -2.0 HutD family protein compare
ABZR87_RS22010 -0.6 -1.6 hypothetical protein compare
ABZR87_RS00305 -0.6 -4.6 ABC transporter ATP-binding protein compare
ABZR87_RS11770 -0.6 -3.2 succinyldiaminopimelate transaminase compare
ABZR87_RS07705 -0.6 -1.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS11630 -0.6 -2.1 SRPBCC family protein compare
ABZR87_RS20040 -0.6 -2.3 BON domain-containing protein compare
ABZR87_RS06695 -0.6 -2.9 P-II family nitrogen regulator compare
ABZR87_RS07020 -0.6 -4.5 dynamin-like GTPase family protein compare
ABZR87_RS17730 -0.5 -2.6 GntR family transcriptional regulator compare
ABZR87_RS04215 -0.5 -2.0 ABC transporter ATP-binding protein compare
ABZR87_RS17565 -0.5 -1.0 helix-turn-helix transcriptional regulator compare
ABZR87_RS11990 -0.5 -1.5 hypothetical protein compare
ABZR87_RS06395 -0.5 -3.1 response regulator compare
ABZR87_RS04120 -0.5 -2.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR87_RS07730 -0.5 -1.3 lysophospholipid acyltransferase family protein compare
ABZR87_RS11790 -0.5 -2.0 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS11940 -0.5 -2.0 SsrA-binding protein SmpB compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source Sodium propionate across organisms