Experiment set2IT039 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Sodium m-arsenite 0.0390625 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS01390 -4.9 -13.4 ACR3 family arsenite efflux transporter conserved
LRK54_RS11565 -3.9 -3.8 anthranilate phosphoribosyltransferase compare
LRK54_RS02895 -3.8 -3.7 rhomboid family intramembrane serine protease compare
LRK54_RS01395 -3.8 -3.3 arsenate reductase ArsC compare
LRK54_RS17505 -3.7 -3.6 preprotein translocase subunit SecG compare
LRK54_RS14825 -3.7 -2.5 protease HtpX compare
LRK54_RS11975 -3.7 -3.6 SLC13 family permease compare
LRK54_RS06685 -3.6 -8.4 TolC family outer membrane protein compare
LRK54_RS00440 -3.5 -5.8 high frequency lysogenization protein HflD compare
LRK54_RS06885 -3.4 -5.7 rhodanese-like domain-containing protein compare
LRK54_RS00620 -3.4 -8.1 FtsH protease activity modulator HflK compare
LRK54_RS14695 -3.4 -13.1 rhomboid family intramembrane serine protease compare
LRK54_RS04585 -3.3 -4.0 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS03710 -3.3 -8.2 tetratricopeptide repeat protein compare
LRK54_RS09805 -3.3 -3.2 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS14590 -3.3 -6.6 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS01680 -3.2 -7.5 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS12860 -3.2 -3.8 RNase adapter RapZ compare
LRK54_RS10150 -3.2 -2.2 DNA topoisomerase I compare
LRK54_RS06755 -3.2 -19.4 LTA synthase family protein compare
LRK54_RS06470 -3.1 -10.4 carboxy terminal-processing peptidase compare
LRK54_RS05785 -3.1 -6.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS05740 -3.1 -3.7 phosphoglycerate kinase compare
LRK54_RS00615 -3.1 -4.8 protease modulator HflC compare
LRK54_RS04720 -3.1 -6.9 phosphoribosylformylglycinamidine synthase compare
LRK54_RS05775 -3.1 -11.2 pyruvate kinase compare
LRK54_RS02090 -3.1 -15.6 NAD-glutamate dehydrogenase compare
LRK54_RS16660 -3.1 -9.0 VTT domain-containing protein compare
LRK54_RS11170 -3.0 -3.0 NADP-dependent malic enzyme compare
LRK54_RS16940 -3.0 -4.1 RNA polymerase sigma factor RpoE compare
LRK54_RS03110 -3.0 -10.1 nucleotidyltransferase family protein compare
LRK54_RS02335 -3.0 -10.1 FUSC family protein compare
LRK54_RS01580 -3.0 -8.1 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS04350 -2.9 -4.9 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS12945 -2.9 -8.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS05415 -2.8 -7.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS05980 -2.8 -2.0 ATP-binding protein compare
LRK54_RS12865 -2.8 -10.0 HPr(Ser) kinase/phosphatase compare
LRK54_RS03290 -2.8 -2.7 RIP metalloprotease RseP compare
LRK54_RS05200 -2.8 -3.8 hypothetical protein compare
LRK54_RS01685 -2.8 -12.6 tryptophan synthase subunit beta compare
LRK54_RS11570 -2.8 -5.5 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS18050 -2.7 -12.0 lipopolysaccharide assembly protein LapB compare
LRK54_RS03125 -2.7 -1.9 preprotein translocase subunit YajC compare
LRK54_RS05985 -2.7 -1.9 response regulator transcription factor compare
LRK54_RS02380 -2.7 -6.0 argininosuccinate lyase compare
LRK54_RS11290 -2.7 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS12295 -2.7 -3.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS00675 -2.7 -10.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS00670 -2.7 -3.7 OmpA family protein compare
LRK54_RS13760 -2.7 -9.2 trypsin-like peptidase domain-containing protein compare
LRK54_RS11375 -2.7 -8.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS05655 -2.6 -2.6 ABC transporter permease compare
LRK54_RS05650 -2.6 -4.3 ABC transporter ATP-binding protein compare
LRK54_RS00690 -2.6 -11.9 2-methylcitrate synthase compare
LRK54_RS02275 -2.6 -5.6 enoyl-CoA hydratase-related protein compare
LRK54_RS06675 -2.6 -9.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS00085 -2.6 -1.8 tetratricopeptide repeat protein compare
LRK54_RS13830 -2.5 -10.2 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS02440 -2.5 -2.9 RNA polymerase-binding protein DksA compare
LRK54_RS06785 -2.5 -1.7 protein-disulfide reductase DsbD compare
LRK54_RS12855 -2.5 -6.3 PTS fructose transporter subunit IIA compare
LRK54_RS08760 -2.4 -3.7 transaldolase compare
LRK54_RS16755 -2.4 -3.3 SurA N-terminal domain-containing protein compare
LRK54_RS03405 -2.4 -8.3 ribonuclease G compare
LRK54_RS02325 -2.4 -3.9 SDR family oxidoreductase compare
LRK54_RS00695 -2.4 -4.8 methylisocitrate lyase compare
LRK54_RS16160 -2.4 -1.7 DUF1674 domain-containing protein compare
LRK54_RS16655 -2.3 -3.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS10855 -2.3 -5.1 protein-export chaperone SecB compare
LRK54_RS04625 -2.3 -12.6 serine hydroxymethyltransferase compare
LRK54_RS00680 -2.3 -11.2 TerC family protein compare
LRK54_RS16615 -2.3 -2.2 phosphopyruvate hydratase compare
LRK54_RS04050 -2.3 -9.3 glycoside hydrolase compare
LRK54_RS10885 -2.3 -13.2 glucokinase compare
LRK54_RS04365 -2.2 -1.7 H-NS histone family protein compare
LRK54_RS02535 -2.2 -5.5 50S ribosomal protein L9 compare
LRK54_RS02460 -2.2 -9.8 phosphoglycolate phosphatase compare
LRK54_RS12300 -2.2 -6.2 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS10950 -2.2 -12.7 S41 family peptidase compare
LRK54_RS08585 -2.2 -17.5 RimK family alpha-L-glutamate ligase compare
LRK54_RS12460 -2.2 -2.9 hypothetical protein compare
LRK54_RS02445 -2.1 -3.4 membrane protein insertion efficiency factor YidD compare
LRK54_RS12190 -2.1 -8.0 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS00345 -2.1 -3.9 TraB/GumN family protein compare
LRK54_RS15035 -2.1 -7.0 M48 family metalloprotease compare
LRK54_RS12595 -2.0 -5.1 (2Fe-2S)-binding protein compare
LRK54_RS06475 -2.0 -8.7 lipoyl synthase compare
LRK54_RS11175 -2.0 -8.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS02855 -2.0 -6.1 type I restriction-modification system subunit M compare
LRK54_RS17270 -2.0 -4.0 DNA translocase FtsK compare
LRK54_RS01410 -2.0 -13.3 ABC transporter ATP-binding protein/permease compare
LRK54_RS12670 -2.0 -9.3 glycosyltransferase compare
LRK54_RS05495 -2.0 -4.5 met regulon transcriptional regulator MetJ compare
LRK54_RS10355 -2.0 -3.6 threonine synthase compare
LRK54_RS12830 -1.9 -6.5 YeiH family protein compare
LRK54_RS05630 -1.9 -7.2 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS10185 -1.9 -14.9 RDD family protein compare
LRK54_RS00405 -1.9 -6.0 FHA domain-containing protein compare
LRK54_RS02495 -1.9 -6.0 50S ribosomal protein L19 compare
LRK54_RS01280 -1.9 -2.5 MBL fold metallo-hydrolase compare
LRK54_RS16875 -1.9 -13.9 kinase/pyrophosphorylase compare
LRK54_RS04305 -1.9 -3.2 shikimate kinase compare
LRK54_RS16730 -1.9 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS13910 -1.9 -5.2 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS00815 -1.9 -6.6 pseudouridine synthase compare
LRK54_RS12305 -1.8 -10.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS07085 -1.8 -14.0 heme o synthase compare
LRK54_RS01400 -1.8 -4.6 arsenical resistance protein ArsH conserved
LRK54_RS14670 -1.8 -1.8 NrsF family protein compare
LRK54_RS16930 -1.8 -9.7 hypothetical protein compare
LRK54_RS01590 -1.8 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS00635 -1.8 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS00080 -1.7 -9.6 helix-turn-helix domain-containing protein compare
LRK54_RS17760 -1.7 -2.6 cation transporter compare
LRK54_RS16865 -1.7 -8.0 protein phosphatase 2C domain-containing protein compare
LRK54_RS16650 -1.7 -7.4 5'/3'-nucleotidase SurE compare
LRK54_RS04450 -1.7 -4.8 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS01585 -1.7 -6.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS03895 -1.7 -10.3 lipopolysaccharide biosynthesis protein compare
LRK54_RS00305 -1.6 -10.0 asparagine synthase B compare
LRK54_RS11560 -1.6 -3.6 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS05550 -1.6 -2.9 FAD-binding protein compare
LRK54_RS06480 -1.6 -9.3 lipoyl(octanoyl) transferase LipB compare
LRK54_RS05735 -1.6 -9.0 maleylacetoacetate isomerase compare
LRK54_RS16720 -1.6 -6.3 trigger factor compare
LRK54_RS09945 -1.6 -5.9 class I SAM-dependent methyltransferase compare
LRK54_RS06610 -1.6 -11.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS10195 -1.6 -2.3 hypothetical protein compare
LRK54_RS05615 -1.6 -10.6 hypothetical protein compare
LRK54_RS11285 -1.5 -4.7 ABC transporter ATP-binding protein compare
LRK54_RS15935 -1.5 -7.8 rRNA pseudouridine synthase compare
LRK54_RS11385 -1.5 -4.1 co-chaperone DjlA compare
LRK54_RS00805 -1.5 -3.2 segregation/condensation protein A compare
LRK54_RS06495 -1.5 -10.1 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS16600 -1.5 -8.1 aminopeptidase P family protein compare
LRK54_RS04995 -1.5 -4.8 LacI family DNA-binding transcriptional regulator compare
LRK54_RS05610 -1.5 -6.9 GtrA family protein compare
LRK54_RS07310 -1.5 -9.4 pteridine reductase compare
LRK54_RS08930 -1.5 -4.3 XRE family transcriptional regulator compare
LRK54_RS07735 -1.5 -7.8 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS05540 -1.5 -4.1 glycosyltransferase family 2 protein compare
LRK54_RS16110 -1.5 -6.8 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS07980 -1.5 -2.7 nitrogen regulation protein NR(I) compare
LRK54_RS05660 -1.5 -8.5 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS12590 -1.5 -10.3 molybdopterin-dependent oxidoreductase compare
LRK54_RS15265 -1.4 -8.4 acetyl-CoA C-acyltransferase compare
LRK54_RS03200 -1.4 -5.9 integration host factor subunit alpha compare
LRK54_RS06415 -1.4 -1.5 hypothetical protein compare
LRK54_RS11765 -1.4 -7.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS13780 -1.4 -5.0 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS16955 -1.4 -9.1 translation elongation factor 4 compare
LRK54_RS18060 -1.4 -5.0 polysaccharide biosynthesis protein compare
LRK54_RS07215 -1.4 -5.8 cytochrome c4 compare
LRK54_RS13675 -1.4 -1.8 methyl-accepting chemotaxis protein compare
LRK54_RS07090 -1.4 -9.9 COX15/CtaA family protein compare
LRK54_RS17830 -1.4 -1.6 mercury resistance system periplasmic binding protein MerP compare
LRK54_RS04710 -1.3 -3.6 glycosyltransferase family 2 protein compare
LRK54_RS02175 -1.3 -7.3 exodeoxyribonuclease V subunit gamma compare
LRK54_RS14465 -1.3 -4.5 septum site-determining protein MinC compare
LRK54_RS05670 -1.3 -5.0 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS07220 -1.3 -6.1 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS08750 -1.3 -3.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS03925 -1.3 -8.7 glycosyltransferase family 4 protein compare
LRK54_RS00320 -1.3 -3.1 phosphoglycerate mutase compare
LRK54_RS00395 -1.3 -3.2 prephenate dehydratase compare
LRK54_RS17905 -1.3 -2.6 NfuA family Fe-S biogenesis protein compare
LRK54_RS03105 -1.3 -8.7 phosphotransferase compare
LRK54_RS02185 -1.3 -3.8 exodeoxyribonuclease V subunit alpha compare
LRK54_RS15020 -1.3 -9.2 polyphosphate kinase 1 compare
LRK54_RS16935 -1.3 -9.2 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS08670 -1.3 -7.5 LacI family transcriptional regulator compare
LRK54_RS12625 -1.3 -6.8 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS01340 -1.2 -8.4 amidophosphoribosyltransferase compare
LRK54_RS04630 -1.2 -1.4 energy-dependent translational throttle protein EttA compare
LRK54_RS02710 -1.2 -1.0 pentapeptide MXKDX repeat protein compare
LRK54_RS11725 -1.2 -1.8 PilZ domain-containing protein compare
LRK54_RS16735 -1.2 -9.2 endopeptidase La compare
LRK54_RS16950 -1.2 -9.0 Do family serine endopeptidase compare
LRK54_RS07120 -1.2 -10.2 cytochrome c oxidase subunit I compare
LRK54_RS18055 -1.2 -4.2 glycosyltransferase family 4 protein compare
LRK54_RS11775 -1.2 -8.3 ABC transporter substrate-binding protein compare
LRK54_RS12005 -1.2 -5.5 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS02035 -1.2 -5.3 GNAT family N-acetyltransferase compare
LRK54_RS05645 -1.2 -9.0 glycosyltransferase compare
LRK54_RS00775 -1.2 -7.0 translational GTPase TypA compare
LRK54_RS05710 -1.2 -8.2 pyridoxal-phosphate dependent enzyme compare
LRK54_RS02070 -1.1 -4.7 acyl-CoA dehydrogenase family protein compare
LRK54_RS07020 -1.1 -1.8 ABC transporter permease compare
LRK54_RS16665 -1.1 -6.5 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS00400 -1.1 -7.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS01285 -1.1 -4.2 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS11785 -1.1 -8.6 VacJ family lipoprotein compare
LRK54_RS02870 -1.1 -3.4 DUF502 domain-containing protein compare
LRK54_RS03395 -1.1 -9.7 metalloprotease TldD compare
LRK54_RS09000 -1.1 -6.7 HAMP domain-containing histidine kinase compare
LRK54_RS11760 -1.1 -8.0 ATP-binding cassette domain-containing protein compare
LRK54_RS05665 -1.1 -3.9 dTDP-glucose 4,6-dehydratase compare
LRK54_RS16155 -1.1 -1.6 folate-binding protein compare
LRK54_RS04895 -1.1 -4.3 tol-pal system-associated acyl-CoA thioesterase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium m-arsenite in Rhodanobacter denitrificans FW104-10B01

For stress Sodium m-arsenite across organisms