Experiment set2IT039 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Benzethonium chloride 0.02 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4584 -4.8 -4.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5527 -4.7 -4.6 Cold shock protein CspC compare
Pf6N2E2_2753 -4.4 -5.2 HtrA protease/chaperone protein compare
Pf6N2E2_5430 -4.2 -12.8 Transglycosylase, Slt family compare
Pf6N2E2_6057 -4.1 -4.8 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3258 -4.1 -5.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2261 -4.0 -7.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_3257 -4.0 -5.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3260 -3.7 -8.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3666 -3.6 -7.0 InaA protein compare
Pf6N2E2_2129 -3.5 -4.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2825 -3.4 -4.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3243 -3.3 -17.3 FIG067310: hypothetical protein conserved
Pf6N2E2_2823 -3.2 -7.0 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_5181 -3.2 -15.7 Paraquat-inducible protein A compare
Pf6N2E2_621 -3.1 -10.2 TPR domain protein in aerotolerance operon compare
Pf6N2E2_2824 -3.1 -12.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_625 -3.1 -7.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5183 -3.0 -18.1 Paraquat-inducible protein B compare
Pf6N2E2_624 -3.0 -6.8 hypothetical protein PA3071 compare
Pf6N2E2_4369 -2.9 -2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4046 -2.8 -19.7 FIG00953482: hypothetical protein conserved
Pf6N2E2_5508 -2.8 -3.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4585 -2.8 -12.4 Cell division protein FtsX compare
Pf6N2E2_622 -2.7 -6.9 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_4451 -2.6 -9.5 FIG139438: lipoprotein B compare
Pf6N2E2_5182 -2.5 -9.2 Paraquat-inducible protein A compare
Pf6N2E2_6058 -2.5 -6.0 FIG139976: hypothetical protein compare
Pf6N2E2_4155 -2.5 -10.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3062 -2.5 -6.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5727 -2.5 -6.1 FIG00955360: hypothetical protein compare
Pf6N2E2_4043 -2.4 -8.2 Outer membrane receptor proteins, mostly Fe transport conserved
Pf6N2E2_3617 -2.4 -5.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3516 -2.3 -1.6 Probable transmembrane protein compare
Pf6N2E2_2574 -2.2 -3.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_4045 -2.2 -2.8 FIG00953248: hypothetical protein compare
Pf6N2E2_4999 -2.2 -7.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_620 -2.1 -7.3 BatD compare
Pf6N2E2_5178 -2.1 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2217 -2.1 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3515 -2.1 -8.6 Probable transmembrane protein compare
Pf6N2E2_6059 -2.1 -5.1 FIG008443: hypothetical protein compare
Pf6N2E2_5001 -2.1 -3.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5956 -2.0 -6.1 FIG004453: protein YceG like compare
Pf6N2E2_4075 -2.0 -5.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2384 -1.9 -5.4 CmpX compare
Pf6N2E2_4352 -1.9 -3.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4072 -1.9 -6.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3607 -1.9 -8.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2473 -1.8 -1.9 Major outer membrane lipoprotein I compare
Pf6N2E2_623 -1.8 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_2755 -1.7 -1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2218 -1.7 -4.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3841 -1.6 -7.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_6099 -1.6 -2.0 tRNA-Glu-TTC compare
Pf6N2E2_4077 -1.6 -2.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3834 -1.6 -4.9 Lipoprotein NlpD compare
Pf6N2E2_4993 -1.5 -2.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3753 -1.5 -10.1 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_248 -1.5 -8.2 hypothetical protein compare
Pf6N2E2_5006 -1.5 -9.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5610 -1.5 -6.9 two-component system sensor protein compare
Pf6N2E2_2752 -1.5 -7.5 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3665 -1.5 -1.5 serine/threonine protein kinase compare
Pf6N2E2_586 -1.4 -7.5 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_5128 -1.4 -3.7 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_1821 -1.4 -2.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3270 -1.4 -4.4 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_288 -1.4 -3.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2675 -1.3 -1.6 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2938 -1.3 -4.6 Outer membrane lipoprotein compare
Pf6N2E2_2756 -1.3 -6.6 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5544 -1.3 -5.9 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5406 -1.2 -3.2 FIG00958224: hypothetical protein compare
Pf6N2E2_3842 -1.2 -3.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4417 -1.2 -4.2 Protein of unknown function DUF484 compare
Pf6N2E2_4162 -1.2 -2.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4074 -1.2 -8.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3349 -1.2 -3.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4416 -1.2 -3.1 Tyrosine recombinase XerC compare
Pf6N2E2_4153 -1.1 -1.6 Sensory box histidine kinase compare
Pf6N2E2_2010 -1.1 -2.0 hypothetical protein compare
Pf6N2E2_3839 -1.1 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4414 -1.1 -3.8 FIG00953808: hypothetical protein compare
Pf6N2E2_350 -1.1 -2.5 Gfa-like protein compare
Pf6N2E2_5242 -1.1 -1.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2325 -1.1 -4.5 Recombination protein RecR compare
Pf6N2E2_5733 -1.0 -3.5 NLP/P60 family protein compare
Pf6N2E2_5615 -1.0 -6.3 Probable Co/Zn/Cd efflux system membrane fusion protein conserved
Pf6N2E2_3460 -1.0 -1.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2674 -1.0 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_4527 -1.0 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1617 -1.0 -1.2 COG2199: FOG: GGDEF domain compare
Pf6N2E2_5172 -1.0 -3.8 FOG: TPR repeat compare
Pf6N2E2_5584 -1.0 -2.8 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2340 -1.0 -3.8 Transcriptional regulator, GntR family compare
Pf6N2E2_5646 -1.0 -1.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5614 -1.0 -8.0 RND multidrug efflux transporter; Acriflavin resistance protein compare
Pf6N2E2_3648 -0.9 -4.2 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf6N2E2_5084 -0.9 -5.9 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_3667 -0.9 -1.4 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_69 -0.9 -4.4 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_5452 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_5086 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_529 -0.9 -3.1 FIG00954439: hypothetical protein compare
Pf6N2E2_1437 -0.9 -2.8 Acyl-CoA dehydrogenase family protein compare
Pf6N2E2_178 -0.9 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4204 -0.9 -1.5 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1848 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_1089 -0.9 -2.0 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_5328 -0.9 -3.8 FIG00958649: hypothetical protein compare
Pf6N2E2_133 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_5468 -0.9 -2.7 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_4996 -0.8 -1.8 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_292 -0.8 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_2519 -0.8 -1.2 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3134 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_4562 -0.8 -2.9 L-cystine uptake protein TcyP compare
Pf6N2E2_4169 -0.8 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3833 -0.8 -3.7 hypothetical protein compare
Pf6N2E2_4477 -0.8 -2.9 Z-ring-associated protein ZapA compare
Pf6N2E2_5993 -0.8 -1.4 FIG00957412: hypothetical protein compare
Pf6N2E2_1081 -0.8 -1.1 probable membrane protein YPO3302 compare
Pf6N2E2_5705 -0.8 -1.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_417 -0.8 -2.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_291 -0.8 -3.6 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_2714 -0.8 -1.4 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_2586 -0.8 -1.4 Hpt domain protein compare
Pf6N2E2_3719 -0.7 -4.2 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein compare
Pf6N2E2_3130 -0.7 -1.7 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_3219 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_2045 -0.7 -2.1 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_813 -0.7 -2.8 Response regulator compare
Pf6N2E2_5316 -0.7 -1.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_282 -0.7 -1.4 GNAT family acetyltransferase YjcF compare
Pf6N2E2_3687 -0.7 -1.6 FIG00959437: hypothetical protein compare
Pf6N2E2_2211 -0.7 -3.9 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_3782 -0.7 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_445 -0.7 -2.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_3461 -0.7 -1.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4448 -0.7 -3.0 probable P23 protein compare
Pf6N2E2_5014 -0.7 -1.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2344 -0.7 -4.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4618 -0.7 -3.2 Chemotaxis signal transduction protein compare
Pf6N2E2_2264 -0.7 -2.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5428 -0.7 -3.4 DNA recombination and repair protein RecO compare
Pf6N2E2_2964 -0.7 -2.1 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_1875 -0.7 -2.1 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_1213 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_2699 -0.7 -3.2 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_3351 -0.7 -2.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_86 -0.7 -3.3 FIG022160: hypothetical toxin compare
Pf6N2E2_3504 -0.7 -4.9 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_2 -0.7 -1.7 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_1762 -0.7 -2.5 putative lipase compare
Pf6N2E2_4353 -0.7 -3.0 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3791 -0.7 -4.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_819 -0.7 -1.4 Response regulator compare
Pf6N2E2_97 -0.7 -2.4 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_2367 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_362 -0.7 -2.2 Dipeptide transport system permease protein dppC compare
Pf6N2E2_1103 -0.7 -2.3 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Pf6N2E2_1836 -0.6 -2.0 Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16) compare
Pf6N2E2_2992 -0.6 -2.9 Regulatory protein RecX compare
Pf6N2E2_416 -0.6 -2.4 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2748 -0.6 -3.8 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf6N2E2_114 -0.6 -2.1 Polysaccharide biosynthesis protein compare
Pf6N2E2_1116 -0.6 -1.2 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4647 -0.6 -4.8 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_89 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_1099 -0.6 -1.4 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_2904 -0.6 -1.3 Hypothetical protein DUF454 compare
Pf6N2E2_1492 -0.6 -1.6 No significant database matches compare
Pf6N2E2_3984 -0.6 -4.5 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4638 -0.6 -1.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2981 -0.6 -1.8 FIG00956655: hypothetical protein compare
Pf6N2E2_2527 -0.6 -2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_579 -0.6 -1.5 FIG00962753: hypothetical protein compare
Pf6N2E2_2127 -0.6 -2.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_971 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_3514 -0.6 -2.2 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_5342 -0.6 -1.4 21 kDa hemolysin precursor compare
Pf6N2E2_1074 -0.6 -1.7 FIG00953356: hypothetical protein compare
Pf6N2E2_217 -0.6 -2.5 Signal transduction histidine kinase compare
Pf6N2E2_4362 -0.6 -2.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1759 -0.6 -2.0 uncharacterized domain 1 compare
Pf6N2E2_4545 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_2552 -0.6 -3.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1340 -0.6 -1.7 major pilin protein fimA compare
Pf6N2E2_5704 -0.6 -2.7 Transcriptional regulatory protein PhoP compare
Pf6N2E2_1905 -0.6 -2.7 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_2417 -0.6 -2.0 Sensor histidine kinase compare
Pf6N2E2_2282 -0.6 -2.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5759 -0.6 -3.2 DNA recombination protein RmuC compare
Pf6N2E2_5300 -0.6 -4.2 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3003 -0.6 -1.4 Bacteriophage protein GP46 compare
Pf6N2E2_4273 -0.6 -3.7 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2013 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_3716 -0.6 -2.6 FIG143263: Glycosyl transferase compare
Pf6N2E2_4139 -0.6 -4.3 Integral membrane protein TerC compare


Specific Phenotypes

For 6 genes in this experiment

For stress Benzethonium chloride in Pseudomonas fluorescens FW300-N2E2

For stress Benzethonium chloride across organisms