Experiment set2IT039 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Arginine carbon source

200 most important genes:

  gene name fitness t score description  
AO353_02995 -4.7 -7.8 succinylglutamate desuccinylase compare
AO353_03035 -4.2 -4.1 AraC family transcriptional regulator compare
AO353_13070 -4.1 -7.4 phosphoserine phosphatase compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05115 -3.9 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_20665 -3.8 -10.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_08345 -3.8 -8.0 dihydroxy-acid dehydratase compare
AO353_03025 -3.8 -5.1 acetylornithine aminotransferase compare
AO353_20625 -3.7 -3.6 3-isopropylmalate dehydratase compare
AO353_12070 -3.7 -7.9 imidazoleglycerol-phosphate dehydratase compare
AO353_10670 -3.7 -7.9 shikimate dehydrogenase compare
AO353_12085 -3.7 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_14505 -3.7 -11.2 ketol-acid reductoisomerase compare
AO353_08885 -3.7 -17.8 polyphosphate kinase compare
AO353_07210 -3.6 -5.5 indole-3-glycerol-phosphate synthase compare
AO353_03010 -3.6 -8.0 succinylglutamate-semialdehyde dehydrogenase compare
AO353_03005 -3.6 -6.0 succinylarginine dihydrolase compare
AO353_08185 -3.6 -9.6 methionine biosynthesis protein MetW compare
AO353_20695 -3.6 -5.9 O-succinylhomoserine sulfhydrylase compare
AO353_07230 -3.6 -15.9 anthranilate synthase compare
AO353_20635 -3.5 -11.0 3-isopropylmalate dehydrogenase compare
AO353_02070 -3.5 -6.7 prephenate dehydratase compare
AO353_22820 -3.4 -17.8 NAD-glutamate dehydrogenase compare
AO353_08180 -3.4 -12.8 homoserine O-acetyltransferase compare
AO353_12365 -3.4 -5.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_14400 -3.3 -3.9 Fis family transcriptional regulator compare
AO353_11850 -3.3 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_03040 -3.2 -8.6 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) conserved
AO353_03015 -3.2 -4.8 arginine N-succinyltransferase compare
AO353_02075 -3.2 -10.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_03050 -3.1 -7.7 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_07215 -3.1 -8.0 anthranilate phosphoribosyltransferase compare
AO353_10710 -3.1 -5.1 tryptophan synthase subunit beta compare
AO353_05110 -3.1 -10.8 histidinol dehydrogenase compare
AO353_20620 -3.1 -7.2 isopropylmalate isomerase compare
AO353_13165 -3.0 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
AO353_22800 -3.0 -3.5 sulfite reductase compare
AO353_02685 -3.0 -4.5 phosphoribosylglycinamide formyltransferase compare
AO353_00430 -3.0 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03055 -3.0 -9.8 ABC transporter for L-Arginine and L-Citrulline, periplasmic substrate-binding component (from data) compare
AO353_08475 -2.9 -9.1 phosphoserine phosphatase compare
AO353_08510 -2.9 -5.5 3-phosphoglycerate dehydrogenase compare
AO353_14500 -2.9 -6.9 acetolactate synthase 3 regulatory subunit compare
AO353_01350 -2.9 -7.1 4-amino-4-deoxychorismate lyase compare
AO353_12360 -2.9 -9.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_00310 -2.9 -9.3 transaldolase compare
AO353_05075 -2.8 -10.5 adenylylsulfate kinase compare
AO353_15925 -2.8 -12.8 2-isopropylmalate synthase compare
AO353_08465 -2.8 -16.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_08595 -2.8 -10.3 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
AO353_14495 -2.7 -10.8 acetolactate synthase 3 catalytic subunit compare
AO353_02250 -2.7 -4.7 chorismate synthase compare
AO353_05080 -2.7 -11.2 sulfate adenylyltransferase compare
AO353_03045 -2.6 -11.6 ABC transporter for L-Arginine and L-Citrulline, permease component 1 (from data) conserved
AO353_12460 -2.6 -8.9 malate dehydrogenase compare
AO353_19060 -2.6 -5.4 CysB family transcriptional regulator compare
AO353_12075 -2.5 -8.6 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07220 -2.5 -8.5 anthranilate synthase compare
AO353_02710 -2.5 -9.8 (p)ppGpp synthetase compare
AO353_12115 -2.4 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_05520 -2.4 -6.3 nicotinate-nucleotide pyrophosphorylase compare
AO353_08165 -2.4 -3.6 pyrroline-5-carboxylate reductase compare
AO353_08470 -2.3 -4.8 RNA pyrophosphohydrolase compare
AO353_06495 -2.3 -6.2 gamma-glutamyl phosphate reductase compare
AO353_14115 -2.3 -6.8 gamma-glutamyl kinase compare
AO353_08015 -2.3 -7.8 5,10-methylenetetrahydrofolate reductase compare
AO353_03615 -2.2 -2.9 cold-shock protein compare
AO353_03020 -2.2 -8.1 arginine N-succinyltransferase compare
AO353_20175 -2.2 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_05105 -2.1 -10.0 histidinol-phosphate aminotransferase compare
AO353_12500 -2.1 -2.0 shikimate kinase compare
AO353_14370 -2.1 -6.9 glucose-6-phosphate isomerase compare
AO353_11730 -2.1 -8.3 glutamate--cysteine ligase compare
AO353_04565 -2.1 -5.7 nucleoid-associated protein compare
AO353_20540 -2.1 -7.6 aromatic amino acid aminotransferase compare
AO353_03525 -2.1 -9.0 quinolinate synthase A compare
AO353_13720 -2.0 -12.8 arginine decarboxylase compare
AO353_02300 -2.0 -2.6 MarR family transcriptional regulator compare
AO353_10705 -1.9 -4.7 tryptophan synthase subunit alpha compare
AO353_11750 -1.9 -3.1 ATPase compare
AO353_11915 -1.9 -7.1 agmatine deiminase compare
AO353_00825 -1.9 -3.5 porin compare
AO353_11775 -1.8 -6.8 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_15900 -1.8 -3.1 GTP-binding protein compare
AO353_14150 -1.8 -2.0 peptidylprolyl isomerase compare
AO353_14990 -1.8 -2.9 hypothetical protein compare
AO353_12105 -1.8 -6.0 peptidase S41 compare
AO353_03580 -1.8 -3.6 ATP-dependent DNA helicase RuvB compare
AO353_14775 -1.8 -6.0 hypothetical protein compare
AO353_07515 -1.8 -2.6 transporter compare
AO353_12345 -1.7 -2.5 twin-arginine protein translocation system subunit TatC compare
AO353_27650 -1.7 -4.7 cell division protein FtsK compare
AO353_14420 -1.7 -3.9 molecular chaperone DnaK compare
AO353_03795 -1.7 -4.6 fumarate hydratase compare
AO353_00510 -1.7 -5.4 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_00495 -1.6 -2.6 DNA topoisomerase I compare
AO353_10455 -1.6 -2.1 tRNA modification GTPase MnmE compare
AO353_07525 -1.6 -10.4 biotin synthase compare
AO353_15170 -1.6 -3.4 cytochrome D ubiquinol oxidase subunit III compare
AO353_07495 -1.5 -11.4 acyl-CoA dehydrogenase compare
AO353_16425 -1.5 -2.2 Fe-S metabolism protein SufE compare
AO353_19090 -1.5 -2.4 MarR family transcriptional regulator compare
AO353_10915 -1.5 -9.2 ABC transporter substrate-binding protein compare
AO353_12080 -1.5 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_10900 -1.5 -7.9 hypothetical protein compare
AO353_11165 -1.5 -8.2 hypothetical protein compare
AO353_18960 -1.5 -1.9 terminase compare
AO353_01375 -1.5 -5.2 phosphate acyltransferase compare
AO353_13100 -1.5 -1.6 GTPase RsgA compare
AO353_09000 -1.5 -5.0 argininosuccinate lyase compare
AO353_06045 -1.4 -5.9 exodeoxyribonuclease V subunit beta compare
AO353_17620 -1.4 -10.5 L-aspartate oxidase compare
AO353_00750 -1.4 -3.5 GntR family transcriptional regulator compare
AO353_08880 -1.4 -2.5 exopolyphosphatase compare
AO353_09275 -1.4 -3.0 DNA-directed RNA polymerase subunit omega compare
AO353_09950 -1.4 -4.6 aspartate ammonia-lyase compare
AO353_05800 -1.4 -4.5 hypothetical protein compare
AO353_14405 -1.4 -7.5 ATPase compare
AO353_10905 -1.4 -7.4 zinc ABC transporter ATP-binding protein conserved
AO353_08780 -1.4 -6.2 5-formyltetrahydrofolate cyclo-ligase compare
AO353_11505 -1.3 -6.9 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) compare
AO353_12240 -1.3 -4.5 histidine utilization repressor compare
AO353_08045 -1.3 -9.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_01915 -1.3 -1.7 GlcG protein compare
AO353_12420 -1.3 -3.3 predicted FeS cluster maintenance protein (from data) compare
AO353_05550 -1.3 -5.3 pseudouridine synthase compare
AO353_01550 -1.3 -4.4 hypothetical protein compare
AO353_25845 -1.3 -2.5 GNAT family acetyltransferase compare
AO353_06050 -1.3 -5.0 exodeoxyribonuclease V subunit gamma compare
AO353_02000 -1.3 -3.6 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_06155 -1.3 -6.3 copper-transporting ATPase compare
AO353_01355 -1.3 -5.6 3-oxoacyl-ACP synthase compare
AO353_08350 -1.2 -6.0 hypothetical protein compare
AO353_03630 -1.2 -7.9 porin compare
AO353_03715 -1.2 -2.1 H-NS histone compare
AO353_13140 -1.2 -4.4 tRNA dimethylallyltransferase compare
AO353_21630 -1.2 -1.9 precorrin-4 C11-methyltransferase compare
AO353_15905 -1.2 -4.8 outer membrane protein assembly factor BamB compare
AO353_05420 -1.2 -1.6 peptide chain release factor 3 compare
AO353_06040 -1.2 -2.8 exodeoxyribonuclease V subunit alpha compare
AO353_28425 -1.2 -3.1 TetR family transcriptional regulator compare
AO353_12870 -1.2 -8.3 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO353_07520 -1.2 -7.8 8-amino-7-oxononanoate synthase compare
AO353_12935 -1.2 -3.2 glycosyltransferase compare
AO353_01975 -1.2 -5.5 glycosyl transferase compare
AO353_07355 -1.2 -4.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_08110 -1.2 -4.6 glutathione synthetase compare
AO353_15250 -1.1 -3.0 cytochrome B compare
AO353_14395 -1.1 -3.2 poly(A) polymerase compare
AO353_08505 -1.1 -7.1 FAD-linked oxidase compare
AO353_07295 -1.1 -8.3 aminoglycoside phosphotransferase compare
AO353_13160 -1.1 -2.2 membrane protease HflC compare
AO353_14585 -1.1 -4.1 ribosomal-protein-alanine acetyltransferase compare
AO353_14220 -1.1 -1.4 ribosomal large subunit pseudouridine synthase D compare
AO353_09285 -1.1 -6.8 reactive intermediate/imine deaminase compare
AO353_15260 -1.1 -4.4 stringent starvation protein A compare
AO353_22375 -1.1 -2.8 cytochrome c-550 PedF compare
AO353_08215 -1.1 -2.7 thiazole synthase compare
AO353_10520 -1.1 -4.5 GntR family transcriptional regulator compare
AO353_03590 -1.0 -2.6 crossover junction endodeoxyribonuclease RuvC compare
AO353_12930 -1.0 -2.4 GlcNAc-PI de-N-acetylase compare
AO353_04665 -1.0 -6.4 ATPase compare
AO353_06460 -1.0 -4.8 hypothetical protein compare
AO353_07505 -1.0 -5.3 dethiobiotin synthetase compare
AO353_09885 -1.0 -1.7 transcriptional regulator PhoU compare
AO353_16210 -1.0 -7.1 XRE family transcriptional regulator compare
AO353_04220 -1.0 -3.7 chemotaxis protein CheY compare
AO353_16925 -1.0 -7.7 AmpG family muropeptide MFS transporter compare
AO353_20095 -1.0 -4.0 histidine kinase compare
AO353_28990 -1.0 -4.7 LOG family protein compare
AO353_27675 -1.0 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_01190 -1.0 -1.7 hypothetical protein compare
AO353_07075 -1.0 -3.2 elongation factor Tu compare
AO353_06160 -1.0 -3.5 transcriptional regulator compare
AO353_01410 -0.9 -2.4 ribonuclease E compare
AO353_02720 -0.9 -3.6 cysteine synthase compare
AO353_28320 -0.9 -1.5 aminopeptidase compare
AO353_10985 -0.9 -1.7 hypothetical protein compare
AO353_05010 -0.9 -1.8 HopJ type III effector protein compare
AO353_10430 -0.9 -2.1 chromosome partitioning protein ParB compare
AO353_10030 -0.9 -5.8 pyruvate carboxylase subunit A compare
AO353_08130 -0.9 -1.8 uracil phosphoribosyltransferase compare
AO353_09705 -0.9 -2.3 hypothetical protein compare
AO353_05625 -0.9 -1.1 transcription elongation factor GreA compare
AO353_15885 -0.9 -2.9 Cro/Cl family transcriptional regulator compare
AO353_17850 -0.9 -2.0 SAM-dependent methyltransferase compare
AO353_00185 -0.9 -1.7 phage tail protein compare
AO353_13390 -0.9 -5.3 N-acylglucosamine 2-epimerase compare
AO353_14935 -0.8 -2.6 aminopeptidase compare
AO353_24260 -0.8 -1.5 hypothetical protein compare
AO353_09865 -0.8 -5.6 hypothetical protein compare
AO353_11610 -0.8 -2.7 glutamine ABC transporter ATP-binding protein compare
AO353_27685 -0.8 -2.9 cold-shock protein compare
AO353_26390 -0.8 -1.8 glyoxalase compare
AO353_13245 -0.8 -4.7 hypothetical protein compare
AO353_22110 -0.8 -2.7 nitrate reductase compare
AO353_07155 -0.8 -4.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10025 -0.8 -6.3 pyruvate carboxylase subunit B compare
AO353_00505 -0.8 -2.6 3-ketoacyl-CoA thiolase compare
AO353_03670 -0.8 -3.0 ornithine acetyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Arginine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Arginine across organisms