Experiment set2IT039 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Arginine carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO353_09915 +2.9 22.3 long-chain acyl-CoA thioester hydrolase compare
AO353_06320 +1.3 6.8 AsnC family transcriptional regulator compare
AO353_05125 +1.3 5.0 BolA family transcriptional regulator compare
AO353_11945 +1.1 2.2 4-oxalocrotonate tautomerase compare
AO353_09745 +1.1 2.4 hypothetical protein compare
AO353_20865 +1.1 2.4 cold-shock protein compare
AO353_10990 +1.1 7.8 glutamate:protein symporter compare
AO353_19070 +1.0 3.5 hypothetical protein compare
AO353_03290 +1.0 1.7 peptide deformylase compare
AO353_09560 +1.0 2.2 type VI secretion protein compare
AO353_03420 +0.9 3.9 phosphogluconate dehydratase compare
AO353_25355 +0.9 2.9 hypothetical protein compare
AO353_04090 +0.9 2.5 leucyl-tRNA synthetase compare
AO353_21625 +0.9 2.4 Fe/S biogenesis protein NfuA compare
AO353_02600 +0.9 2.1 alpha-ribazole phosphatase compare
AO353_07645 +0.9 1.6 sarcosine oxidase subunit gamma compare
AO353_15490 +0.9 2.4 hypothetical protein compare
AO353_12580 +0.9 2.4 type II secretory protein PulK compare
AO353_26080 +0.9 2.9 hypothetical protein compare
AO353_24440 +0.8 2.2 reactive intermediate/imine deaminase compare
AO353_22870 +0.8 2.7 oxidoreductase compare
AO353_21595 +0.8 4.4 serine/threonine protein kinase compare
AO353_13225 +0.7 2.3 50S ribosomal protein L9 compare
AO353_18745 +0.7 2.3 flagellar biosynthesis protein flip compare
AO353_20785 +0.7 3.5 carbon storage regulator CsrA compare
AO353_12690 +0.7 1.2 acyl carrier protein compare
AO353_03830 +0.7 2.0 antibiotic biosynthesis monooxygenase compare
AO353_19810 +0.7 2.1 filamentous hemagglutinin compare
AO353_03510 +0.7 2.0 glycine cleavage system protein T compare
AO353_02270 +0.7 3.3 isochorismatase compare
AO353_01810 +0.7 5.1 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_17100 +0.7 2.2 hypothetical protein compare
AO353_23895 +0.6 2.4 phospholipase compare
AO353_03710 +0.6 1.9 formyltetrahydrofolate deformylase compare
AO353_03515 +0.6 1.2 cold-shock protein compare
AO353_26525 +0.6 1.4 hypothetical protein compare
AO353_12790 +0.6 1.6 hypothetical protein compare
AO353_16870 +0.6 2.8 acetyltransferase compare
AO353_17750 +0.6 2.0 transcriptional regulator compare
AO353_13965 +0.6 3.2 large-conductance mechanosensitive channel compare
AO353_25320 +0.6 1.6 phosphoribosyl-dephospho-CoA transferase compare
AO353_01220 +0.6 1.1 hypothetical protein compare
AO353_15450 +0.6 4.8 ubiquinol oxidase subunit II compare
AO353_20000 +0.6 1.9 phosphoribosyltransferase compare
AO353_12535 +0.6 2.2 hypothetical protein compare
AO353_19685 +0.6 1.8 alkylhydroperoxidase compare
AO353_22600 +0.6 1.2 hypothetical protein compare
AO353_13920 +0.6 1.9 dihydroxyacetone kinase compare
AO353_17940 +0.6 1.8 hypothetical protein compare
AO353_27710 +0.6 1.3 DNA repair protein compare
AO353_24600 +0.5 1.5 hypothetical protein compare
AO353_23510 +0.5 2.2 transcriptional regulator compare
AO353_24870 +0.5 1.7 hypothetical protein compare
AO353_21250 +0.5 2.7 peptidase compare
AO353_16195 +0.5 0.8 DNA mismatch repair protein MutT compare
AO353_28450 +0.5 1.9 LysR family transcriptional regulator compare
AO353_11050 +0.5 2.5 hypothetical protein compare
AO353_20425 +0.5 1.3 ArsC family transcriptional regulator compare
AO353_12670 +0.5 2.1 glycosyl transferase compare
AO353_04650 +0.5 1.7 molybdenum cofactor biosynthesis protein MoaE compare
AO353_06480 +0.5 1.4 50S rRNA methyltransferase compare
AO353_17160 +0.5 1.6 aspartate-semialdehyde dehydrogenase compare
AO353_12480 +0.5 3.1 pilus assembly protein PilN compare
AO353_12020 +0.5 1.5 hypothetical protein compare
AO353_17085 +0.5 1.6 hypothetical protein compare
AO353_21400 +0.5 1.5 conjugal transfer protein TraR compare
AO353_10320 +0.5 1.1 hypothetical protein compare
AO353_19250 +0.5 1.1 molybdenum cofactor guanylyltransferase compare
AO353_02525 +0.5 2.2 molecular chaperone compare
AO353_05620 +0.5 2.3 MFS transporter compare
AO353_16645 +0.5 2.1 hypothetical protein compare
AO353_24820 +0.5 2.4 histidine kinase compare
AO353_00235 +0.5 1.6 transcriptional regulator compare
AO353_02625 +0.5 3.8 cobalamin biosynthesis protein CobD compare
AO353_08775 +0.5 1.3 cell division protein ZapA compare
AO353_12880 +0.5 1.2 ADP-heptose--LPS heptosyltransferase compare
AO353_23935 +0.5 2.1 hypothetical protein compare
AO353_18765 +0.5 1.7 hypothetical protein compare
AO353_16675 +0.5 2.3 phage tail protein compare
AO353_12765 +0.5 1.6 transcriptional regulator compare
AO353_27445 +0.5 2.0 hypothetical protein compare
AO353_24765 +0.5 1.8 GCN5 family acetyltransferase compare
AO353_10780 +0.5 1.0 DNA-binding protein compare
AO353_14085 +0.5 1.8 hypothetical protein compare
AO353_24745 +0.5 1.1 hypothetical protein compare
AO353_11455 +0.5 1.3 hypothetical protein compare
AO353_22475 +0.5 1.4 alkaline phosphatase compare
AO353_06125 +0.5 2.1 ArsR family transcriptional regulator compare
AO353_25720 +0.5 1.9 peroxidase compare
AO353_24075 +0.5 2.9 RND transporter compare
AO353_12600 +0.5 2.1 LysR family transcriptional regulator compare
AO353_25335 +0.5 1.2 malonate decarboxylase acyl carrier protein compare
AO353_05340 +0.5 2.4 histidine kinase compare
AO353_12575 +0.5 1.5 type II secretion system protein GspJ compare
AO353_17935 +0.4 1.4 hypothetical protein compare
AO353_01730 +0.4 2.6 lipase compare
AO353_13465 +0.4 2.7 hypothetical protein compare
AO353_00955 +0.4 1.5 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_09860 +0.4 3.5 histidine kinase compare
AO353_24400 +0.4 1.9 ACP phosphodiesterase compare
AO353_23840 +0.4 1.8 hypothetical protein compare
AO353_24815 +0.4 1.7 amino acid ABC transporter substrate-binding protein compare
AO353_15680 +0.4 1.7 cation-binding protein compare
AO353_08955 +0.4 2.1 transcriptional regulator compare
AO353_23385 +0.4 2.5 trans-2-enoyl-CoA reductase compare
AO353_01595 +0.4 0.7 Flp pilus assembly protein CpaB compare
AO353_15280 +0.4 2.1 hypothetical protein compare
AO353_24985 +0.4 1.6 L-seryl-tRNA(Sec) selenium transferase compare
AO353_01795 +0.4 1.0 hypothetical protein compare
AO353_01800 +0.4 1.7 hypothetical protein compare
AO353_20510 +0.4 0.9 amidase compare
AO353_10310 +0.4 1.9 CopG family transcriptional regulator compare
AO353_09345 +0.4 1.3 hypothetical protein compare
AO353_25100 +0.4 3.0 glucose transporter compare
AO353_04905 +0.4 2.5 biopolymer transporter ExbD compare
AO353_09775 +0.4 1.6 hypothetical protein compare
AO353_09735 +0.4 2.0 hypothetical protein compare
AO353_02255 +0.4 2.1 alpha/beta hydrolase compare
AO353_25860 +0.4 2.0 peptide ABC transporter compare
AO353_15500 +0.4 3.3 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_24535 +0.4 1.1 hypothetical protein compare
AO353_25375 +0.4 2.6 cyclic pyranopterin phosphate synthase MoaA compare
AO353_23985 +0.4 1.9 isochorismate-pyruvate lyase compare
AO353_12045 +0.4 2.2 iron transporter compare
AO353_04240 +0.4 0.9 chemotaxis protein CheW compare
AO353_12665 +0.4 1.3 glycosyl transferase compare
AO353_21090 +0.4 2.2 hypothetical protein compare
AO353_00205 +0.4 2.1 head protein compare
AO353_09105 +0.4 3.0 LysR family transcriptional regulator compare
AO353_01685 +0.4 0.7 hypothetical protein compare
AO353_14485 +0.4 0.8 pseudouridine synthase compare
AO353_27000 +0.4 0.7 hypothetical protein compare
AO353_03330 +0.4 1.6 aldehyde dehydrogenase compare
AO353_07270 +0.4 1.2 transcriptional regulator compare
AO353_23400 +0.4 1.0 hypothetical protein compare
AO353_07910 +0.4 1.2 hypothetical protein compare
AO353_05130 +0.4 0.8 anti-anti-sigma factor compare
AO353_21420 +0.4 2.0 hypothetical protein compare
AO353_02260 +0.4 1.5 hypothetical protein compare
AO353_06100 +0.4 0.7 thymidylate synthase compare
AO353_03505 +0.4 2.9 serine dehydratase compare
AO353_19270 +0.4 2.3 LuxR family transcriptional regulator compare
AO353_12335 +0.4 2.6 chemotaxis protein compare
AO353_25585 +0.4 0.9 argininosuccinate lyase compare
AO353_01780 +0.4 2.8 heat-shock protein Hsp90 compare
AO353_28870 +0.4 2.0 hypothetical protein compare
AO353_26415 +0.4 1.5 hypothetical protein compare
AO353_11940 +0.4 1.3 hypothetical protein compare
AO353_27590 +0.4 2.3 hypothetical protein compare
AO353_05525 +0.4 2.1 dephospho-CoA kinase compare
AO353_18985 +0.4 1.2 hypothetical protein compare
AO353_15465 +0.4 2.0 cytochrome C oxidase compare
AO353_14030 +0.4 3.1 ABC transporter ATP-binding protein compare
AO353_21240 +0.4 1.8 undecaprenyl-phosphate glucose phosphotransferase compare
AO353_10570 +0.4 2.2 hypothetical protein compare
AO353_03285 +0.4 1.9 GCN5 family acetyltransferase compare
AO353_11255 +0.4 1.5 RND transporter compare
AO353_16795 +0.4 1.3 lysozyme compare
AO353_08995 +0.4 3.0 chemotaxis protein CheY compare
AO353_00210 +0.4 2.3 terminase compare
AO353_09600 +0.4 1.6 hypothetical protein compare
AO353_18965 +0.4 2.1 chemotaxis protein compare
AO353_25050 +0.4 1.6 AraC family transcriptional regulator compare
AO353_12150 +0.4 1.5 histidine kinase compare
AO353_08965 +0.4 2.1 transcriptional regulator compare
AO353_08060 +0.4 1.1 hypothetical protein compare
AO353_08540 +0.4 2.6 alpha/beta hydrolase compare
AO353_20480 +0.4 1.5 hypothetical protein compare
AO353_29160 +0.4 1.0 GTP pyrophosphokinase compare
AO353_22285 +0.4 1.8 mechanosensitive ion channel protein MscS compare
AO353_26985 +0.4 1.6 hypothetical protein compare
AO353_02045 +0.4 2.2 hypothetical protein compare
AO353_22725 +0.4 1.6 hypothetical protein compare
AO353_27580 +0.4 1.4 hypothetical protein compare
AO353_16345 +0.4 1.2 energy transducer TonB compare
AO353_27825 +0.4 1.2 peptidylprolyl isomerase compare
AO353_16020 +0.4 1.6 tRNA (cmo5U34)-methyltransferase compare
AO353_04045 +0.4 1.9 3-ketoacyl-ACP reductase compare
AO353_20815 +0.4 1.0 LacI family transcriptional regulator compare
AO353_02790 +0.3 2.1 Zn-dependent metalloprotease compare
AO353_11180 +0.3 3.3 large adhesive protein compare
AO353_22035 +0.3 1.5 pyridoxine 5'-phosphate oxidase compare
AO353_13715 +0.3 0.8 translation initiation factor Sui1 compare
AO353_10930 +0.3 2.2 DNA polymerase I compare
AO353_11160 +0.3 2.2 GntR family transcriptional regulator compare
AO353_27130 +0.3 0.9 hypothetical protein compare
AO353_00350 +0.3 1.7 copper-binding protein compare
AO353_11190 +0.3 2.8 ABC transporter compare
AO353_28380 +0.3 1.2 GntR family transcriptional regulator compare
AO353_14915 +0.3 0.9 (2Fe-2S)-binding protein compare
AO353_23590 +0.3 0.9 ArsR family transcriptional regulator compare
AO353_18600 +0.3 1.4 flagellar basal-body rod protein FlgG compare
AO353_13420 +0.3 0.7 hypothetical protein compare
AO353_18425 +0.3 1.5 hypothetical protein compare
AO353_16635 +0.3 1.6 pyocin R2, holin compare
AO353_01035 +0.3 1.0 hypothetical protein compare
AO353_17180 +0.3 1.5 hypothetical protein compare
AO353_26550 +0.3 0.8 hypothetical protein compare
AO353_17665 +0.3 2.1 glycine cleavage system protein R compare
AO353_01765 +0.3 1.7 peroxiredoxin compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Arginine in Pseudomonas fluorescens FW300-N2E3

For carbon source L-Arginine across organisms