Experiment set2IT039 for Shewanella loihica PV-4

Compare to:

LB with Sodium nitrate 2000 mM

200 most detrimental genes:

  gene name fitness t score description  
Shew_3273 +2.8 10.6 hypothetical protein (RefSeq) compare
Shew_0755 +2.8 6.2 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_2049 +2.6 7.4 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_3432 pdhR +2.3 5.2 transcriptional regulator PdhR (RefSeq) compare
Shew_1224 +2.2 17.0 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1819 +2.0 4.8 GntR family transcriptional regulator (RefSeq) compare
Shew_2000 +1.9 2.7 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_2642 +1.9 4.3 flavodoxin (RefSeq) compare
Shew_3431 aceE +1.7 10.8 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_1437 +1.7 7.9 transcriptional regulator, TyrR (RefSeq) compare
Shew_1822 +1.7 4.5 aconitate hydratase (RefSeq) compare
Shew_3430 +1.6 3.3 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_1278 +1.6 1.2 hypothetical protein (RefSeq) compare
Shew_2572 +1.6 6.9 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_2656 +1.5 7.2 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_0763 +1.5 8.6 putative PAS/PAC sensor protein (RefSeq) compare
Shew_1202 +1.5 7.5 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1714 +1.4 2.8 alpha/beta hydrolase fold (RefSeq) compare
Shew_0722 +1.4 1.5 hypothetical protein (RefSeq) compare
Shew_2320 +1.4 6.8 RNA methyltransferase (RefSeq) compare
Shew_2573 +1.4 7.7 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_1014 +1.4 1.3 XRE family transcriptional regulator (RefSeq) compare
Shew_0127 +1.4 4.2 LexA repressor (RefSeq) compare
Shew_3377 +1.4 0.6 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_0462 +1.4 1.4 hypothetical protein (RefSeq) compare
Shew_3681 +1.3 11.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0343 +1.3 1.8 hypothetical protein (RefSeq) compare
Shew_3262 +1.3 1.3 hypothetical protein (RefSeq) compare
Shew_0438 +1.3 1.2 GumN family protein (RefSeq) compare
Shew_3660 +1.3 10.6 glutathione reductase (RefSeq) compare
Shew_3311 +1.3 5.2 RNA polymerase factor sigma-54 (RefSeq) compare
Shew_3682 +1.3 8.3 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_2892 +1.2 4.4 major facilitator transporter (RefSeq) compare
Shew_1186 +1.2 3.0 transcriptional regulator NrdR (RefSeq) compare
Shew_1078 +1.2 8.1 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_3487 pyrE +1.2 3.6 orotate phosphoribosyltransferase (RefSeq) compare
Shew_1050 +1.2 3.6 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2571 +1.2 5.1 propionyl-CoA carboxylase (RefSeq) compare
Shew_0570 +1.2 1.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_3267 +1.2 4.0 sodium/hydrogen exchanger (RefSeq) compare
Shew_1058 +1.2 6.1 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_3388 +1.2 0.8 hypothetical protein (RefSeq) compare
Shew_2957 +1.2 3.1 hypothetical protein (RefSeq) compare
Shew_1810 +1.2 5.0 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_1865 +1.2 3.7 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_2073 +1.2 1.1 lactoylglutathione lyase (RefSeq) compare
Shew_0421 +1.2 1.4 phage shock protein C, PspC (RefSeq) compare
Shew_0057 +1.2 3.4 cytoplasmic chaperone TorD family protein (RefSeq) compare
Shew_1925 +1.1 5.2 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Shew_2403 +1.1 1.7 arylesterase (RefSeq) compare
Shew_3500 +1.1 2.6 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2406 +1.1 2.1 AraC family transcriptional regulator (RefSeq) compare
Shew_1926 +1.1 2.8 transketolase, central region (RefSeq) compare
Shew_2668 +1.1 5.3 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_1731 +1.1 0.8 histidine triad (HIT) protein (RefSeq) compare
Shew_1563 +1.1 4.6 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1713 +1.1 1.7 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1555 +1.0 1.7 Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq) compare
Shew_0728 +1.0 6.0 dihydroorotase (RefSeq) compare
Shew_2458 +1.0 1.0 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_2554 +1.0 0.9 outer membrane protein W (RefSeq) compare
Shew_3710 tdh +1.0 8.1 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_3295 +1.0 5.9 AFG1 family ATPase (RefSeq) compare
Shew_2061 +1.0 1.1 radical SAM domain-containing protein (RefSeq) compare
Shew_1518 +1.0 1.1 hypothetical protein (RefSeq) compare
Shew_1298 guaA +1.0 5.0 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_2349 +1.0 3.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0296 +0.9 0.7 heat shock protein Hsp20 (RefSeq) compare
Shew_2153 +0.9 1.2 LysR family transcriptional regulator (RefSeq) compare
Shew_0301 +0.9 1.1 AsnC family transcriptional regulator (RefSeq) compare
Shew_3131 +0.9 4.7 poly(A) polymerase (RefSeq) compare
Shew_2666 +0.9 5.8 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_2667 +0.9 5.5 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_0086 +0.9 7.4 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_2664 +0.9 5.8 transcriptional regulator, putative (RefSeq) compare
Shew_1257 +0.9 3.0 DNA repair protein RadC (RefSeq) compare
Shew_2665 +0.9 7.5 beta-ketoacyl synthase (RefSeq) compare
Shew_3683 +0.9 3.8 extracellular solute-binding protein (RefSeq) compare
Shew_0867 +0.9 1.1 malate dehydrogenase (RefSeq) compare
Shew_3427 +0.9 4.0 patatin (RefSeq) compare
Shew_0430 +0.9 1.9 histone family protein DNA-binding protein (RefSeq) compare
Shew_2025 +0.9 4.3 leucine-responsive transcriptional regulator (RefSeq) compare
Shew_3560 +0.9 3.5 signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) compare
Shew_2589 +0.8 1.5 hypothetical protein (RefSeq) compare
Shew_3709 +0.8 6.6 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_3664 +0.8 6.7 alpha-L-glutamate ligase (RefSeq) compare
Shew_2106 +0.8 2.7 hypothetical protein (RefSeq) compare
Shew_1210 +0.8 2.1 stationary-phase survival protein SurE (RefSeq) compare
Shew_1920 +0.8 2.8 alpha/beta hydrolase fold (RefSeq) compare
Shew_1574 +0.8 3.6 ATP-binding Mrp/Nbp35 family protein (RefSeq) compare
Shew_0799 +0.8 1.6 MarR family transcriptional regulator (RefSeq) compare
Shew_1341 +0.8 2.0 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_0459 +0.8 2.2 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_2882 +0.8 2.3 S-ribosylhomocysteinase (RefSeq) compare
Shew_2327 +0.8 0.5 hypothetical protein (RefSeq) compare
Shew_0220 +0.8 3.6 phosphoglycolate phosphatase (RefSeq) compare
Shew_3247 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_1968 +0.8 1.2 beta-lactamase (RefSeq) compare
Shew_0373 +0.8 1.3 hypothetical protein (RefSeq) compare
Shew_2837 +0.8 0.6 transcription elongation factor GreA (RefSeq) compare
Shew_0827 +0.8 0.8 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1092 +0.8 3.4 amino acid carrier protein (RefSeq) compare
Shew_3394 +0.8 0.8 MscS mechanosensitive ion channel (RefSeq) compare
Shew_2652 +0.8 1.8 hypothetical protein (RefSeq) compare
Shew_1455 +0.8 0.7 dual specificity protein phosphatase (RefSeq) compare
Shew_0534 +0.8 2.3 major facilitator transporter (RefSeq) compare
Shew_2282 +0.7 1.1 Fis family transcriptional regulator (RefSeq) compare
Shew_1498 +0.7 3.1 hypothetical protein (RefSeq) compare
Shew_1023 +0.7 1.7 hypothetical protein (RefSeq) compare
Shew_2584 +0.7 4.0 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_3718 +0.7 1.0 hypothetical protein (RefSeq) compare
Shew_2644 +0.7 1.9 hypothetical protein (RefSeq) compare
Shew_0450 +0.7 3.3 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_1812 +0.7 3.0 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_1227 +0.7 0.9 glutamate--cysteine ligase (RefSeq) compare
Shew_2544 +0.7 1.4 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_2514 +0.7 1.3 tRNA--hydroxylase (RefSeq) compare
Shew_0604 +0.7 2.9 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_0718 +0.7 2.2 cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq) compare
Shew_1313 +0.7 1.1 TetR family transcriptional regulator (RefSeq) compare
Shew_1606 +0.7 0.6 hypothetical protein (RefSeq) compare
Shew_3378 +0.7 0.8 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_2494 +0.7 1.0 phage shock protein C, PspC (RefSeq) compare
Shew_2026 +0.7 1.8 alanine dehydrogenase (RefSeq) compare
Shew_1470 +0.7 3.1 sulfatase (RefSeq) compare
Shew_1995 +0.7 1.0 PP-loop domain-containing protein (RefSeq) compare
Shew_1867 +0.7 2.0 hypothetical protein (RefSeq) compare
Shew_0640 +0.7 1.1 TPR repeat-containing protein (RefSeq) compare
Shew_3379 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_1570 +0.7 2.5 17 kDa surface antigen (RefSeq) compare
Shew_1961 +0.7 1.1 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_1456 +0.7 2.5 phospholipase D/transphosphatidylase (RefSeq) compare
Shew_1015 +0.7 3.4 Cl- channel, voltage-gated family protein (RefSeq) compare
Shew_3363 +0.7 0.8 3-dehydroquinate dehydratase, type II (RefSeq) compare
Shew_3080 +0.7 1.6 thiol:disulfide interchange protein, putative (RefSeq) compare
Shew_1059 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_0788 +0.6 1.5 dienelactone hydrolase (RefSeq) compare
Shew_1823 +0.6 0.8 putative AcnD-accessory protein PrpF (RefSeq) compare
Shew_2423 +0.6 1.7 hypothetical protein (RefSeq) compare
Shew_1644 +0.6 0.5 DSBA oxidoreductase (RefSeq) compare
Shew_R0076 +0.6 0.7 tRNA-Asn (RefSeq) compare
Shew_3833 +0.6 1.9 no description compare
Shew_0121 +0.6 0.6 hypothetical protein (RefSeq) compare
Shew_1531 grxA +0.6 1.4 glutaredoxin 1 (RefSeq) compare
Shew_3598 +0.6 0.6 AsnC family transcriptional regulator (RefSeq) compare
Shew_2434 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_1742 +0.6 0.9 methyl-accepting chemotaxis protein (RefSeq) compare
Shew_2838 carB +0.6 2.6 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_2128 +0.6 2.0 transglutaminase domain-containing protein (RefSeq) compare
Shew_2417 +0.6 2.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) compare
Shew_2228 +0.6 3.3 inosine kinase (RefSeq) compare
Shew_3442 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_2531 +0.6 3.3 LysR family transcriptional regulator (RefSeq) compare
Shew_1235 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_3064 gcvT +0.6 4.5 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_2992 +0.6 2.0 amidohydrolase (RefSeq) compare
Shew_1896 +0.6 0.7 putative lipoprotein (RefSeq) compare
Shew_1881 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_2121 +0.6 1.4 diguanylate cyclase (RefSeq) compare
Shew_2570 +0.6 4.9 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_0695 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_1781 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_1776 +0.6 2.3 acetolactate synthase 3 catalytic subunit (RefSeq) compare
Shew_2350 +0.6 1.0 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_2553 +0.6 1.0 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1592 +0.6 1.3 sulphate transporter (RefSeq) compare
Shew_1910 +0.6 1.6 bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq) compare
Shew_3059 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_2971 +0.6 2.9 hypothetical protein (RefSeq) compare
Shew_3498 rpoZ +0.6 1.9 DNA-directed RNA polymerase subunit omega (RefSeq) compare
Shew_1444 +0.6 1.6 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) compare
Shew_0950 +0.6 1.8 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_3517 +0.6 3.5 histidine ammonia-lyase (RefSeq) compare
Shew_0342 +0.6 2.5 hypothetical protein (RefSeq) compare
Shew_1836 +0.6 1.8 uracil-xanthine permease (RefSeq) compare
Shew_1542 +0.6 1.6 major facilitator transporter (RefSeq) compare
Shew_1613 rrmA +0.6 1.7 23S rRNA methyltransferase A (RefSeq) compare
Shew_3561 +0.5 2.6 nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) compare
Shew_2481 +0.5 1.7 porin (RefSeq) compare
Shew_1820 prpB +0.5 1.9 2-methylisocitrate lyase (RefSeq) compare
Shew_1514 upp +0.5 1.6 uracil phosphoribosyltransferase (RefSeq) compare
Shew_1013 +0.5 4.7 aspartate carbamoyltransferase (RefSeq) compare
Shew_2795 +0.5 2.6 xanthine/uracil/vitamin C permease (RefSeq) compare
Shew_0546 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_1927 +0.5 0.7 dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_1780 +0.5 1.5 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_3689 +0.5 1.6 hypothetical protein (RefSeq) compare
Shew_1159 +0.5 1.2 thioesterase superfamily protein (RefSeq) compare
Shew_1782 +0.5 3.2 MarR family transcriptional regulator (RefSeq) compare
Shew_2576 +0.5 1.3 3-oxoacid CoA-transferase, B subunit (RefSeq) compare
Shew_2839 +0.5 4.2 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_2751 rdgC +0.5 1.5 recombination associated protein (RefSeq) compare
Shew_0698 +0.5 2.1 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_0708 +0.5 1.7 hypothetical protein (RefSeq) compare
Shew_3532 +0.5 2.0 globin (RefSeq) compare
Shew_2253 +0.5 2.5 anthranilate phosphoribosyltransferase (RefSeq) compare
Shew_0973 +0.5 3.0 extracellular solute-binding protein (RefSeq) compare
Shew_3711 +0.5 0.5 rhodanese domain-containing protein (RefSeq) compare
Shew_1356 +0.5 2.5 flagellin domain-containing protein (RefSeq) compare
Shew_0206 +0.5 3.4 argininosuccinate lyase (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in stress experiments

For stress Sodium nitrate across organisms