Experiment set2IT039 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS05285 -10.3 -7.1 MMPL family transporter compare
MMP_RS04215 -9.3 -9.1 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS01175 -9.0 -5.1 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05500 -8.8 -10.3 2-isopropylmalate synthase compare
MMP_RS05280 -8.7 -13.3 COG1361 S-layer family protein compare
MMP_RS03450 -8.6 -3.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS06680 -8.6 -16.5 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS01455 -8.3 -8.5 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS06685 -7.9 -16.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07845 -7.8 -4.0 LL-diaminopimelate aminotransferase compare
MMP_RS06895 -7.5 -3.0 selenocysteine-specific translation elongation factor compare
MMP_RS06270 -7.4 -7.3 TIGR00300 family protein compare
MMP_RS07345 -7.2 -5.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS06375 -7.1 -4.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06355 -7.1 -3.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07635 -6.9 -8.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06730 -6.7 -3.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS05930 -6.7 -3.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS01800 -6.5 -4.5 TIGR00303 family protein compare
MMP_RS03025 -6.5 -7.8 molybdenum cofactor guanylyltransferase compare
MMP_RS04710 -6.5 -2.6 hypothetical protein compare
MMP_RS06700 -6.3 -17.0 hypothetical protein compare
MMP_RS03435 -6.3 -2.9 ketol-acid reductoisomerase compare
MMP_RS03960 -6.2 -1.4 hypothetical protein compare
MMP_RS03640 -6.1 -5.3 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS08715 -6.1 -2.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS03035 -6.0 -5.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08460 -6.0 -3.4 proteasome-activating nucleotidase compare
MMP_RS00685 -5.9 -5.7 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06720 -5.9 -10.0 response regulator transcription factor compare
MMP_RS06295 -5.8 -10.0 methanogenesis marker 14 protein compare
MMP_RS01380 -5.8 -6.5 PHP domain-containing protein compare
MMP_RS07730 -5.8 -3.0 pyruvate synthase subunit beta compare
MMP_RS06715 -5.8 -22.8 cache domain-containing protein compare
MMP_RS02280 -5.7 -1.3 DUF211 domain-containing protein compare
MMP_RS06345 -5.5 -13.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS08650 -5.5 -5.1 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS07185 -5.5 -15.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS03015 -5.5 -12.1 GTP 3' 8-cyclase MoaA compare
MMP_RS06175 -5.5 -7.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS00305 -5.4 -2.8 phosphoribosyl-ATP diphosphatase compare
MMP_RS06020 -5.4 -7.2 archaeoflavoprotein AfpA compare
MMP_RS04780 -5.3 -3.4 ribonuclease P compare
MMP_RS00750 -5.3 -3.9 fumarate hydratase compare
MMP_RS08300 -5.2 -2.1 metal-sulfur cluster assembly factor compare
MMP_RS01500 -5.2 -4.0 CBS domain-containing protein compare
MMP_RS04685 -5.1 -5.3 DUF126 domain-containing protein compare
MMP_RS03600 -5.1 -3.4 triose-phosphate isomerase compare
MMP_RS03445 -5.1 -1.7 methanogenesis marker 17 protein compare
MMP_RS06340 -5.0 -10.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS06630 -5.0 -1.6 UPF0058 family protein compare
MMP_RS05515 -5.0 -8.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06705 -4.9 -10.4 formate/nitrite transporter family protein compare
MMP_RS05845 -4.9 -2.9 tRNA-intron lyase compare
MMP_RS06350 -4.9 -8.2 HesA/MoeB/ThiF family protein compare
MMP_RS04585 -4.8 -13.0 AIR synthase related protein compare
MMP_RS04615 -4.8 -3.8 PDGLE domain-containing protein compare
MMP_RS06230 -4.8 -5.3 helix-turn-helix domain-containing protein compare
MMP_RS08635 -4.8 -2.7 UbiA family prenyltransferase compare
MMP_RS03315 -4.8 -1.9 ferrous iron transport protein A compare
MMP_RS06285 -4.7 -3.5 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS05265 -4.7 -2.6 2-isopropylmalate synthase compare
MMP_RS03580 -4.7 -5.1 signal recognition particle-docking protein FtsY compare
MMP_RS06400 -4.7 -2.4 4Fe-4S binding protein compare
MMP_RS02240 -4.6 -5.3 methanogenesis marker 7 protein compare
MMP_RS08745 -4.6 -8.6 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS04605 -4.5 -6.9 cobalt ECF transporter T component CbiQ compare
MMP_RS08720 -4.5 -2.8 4Fe-4S binding protein compare
MMP_RS06925 -4.5 -4.9 ribonuclease VapC4 compare
MMP_RS03700 -4.4 -14.5 sodium:proton antiporter compare
MMP_RS01830 -4.4 -2.0 tRNA-Val compare
MMP_RS07630 -4.4 -2.0 ATP-binding cassette domain-containing protein compare
MMP_RS07365 -4.4 -13.6 2-phosphoglycerate kinase compare
MMP_RS06110 -4.4 -4.1 ATP-dependent protease LonB compare
MMP_RS04620 -4.3 -19.4 cobalt transporter CbiM compare
MMP_RS04775 -4.2 -5.7 adenosylhomocysteinase compare
MMP_RS00295 -4.2 -3.4 gamma carbonic anhydrase family protein compare
MMP_RS01005 -4.2 -1.9 riboflavin synthase compare
MMP_RS05095 -4.2 -10.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS01755 -4.1 -2.2 DUF2097 domain-containing protein compare
MMP_RS02345 -4.1 -5.5 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS02900 -4.1 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07390 -4.1 -4.6 cell division protein FtsZ compare
MMP_RS01610 -4.1 -5.9 hypothetical protein compare
MMP_RS04890 -4.0 -1.3 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS01700 -4.0 -1.3 dihydroxy-acid dehydratase compare
MMP_RS04870 -4.0 -6.6 TIGR02253 family HAD-type hydrolase compare
MMP_RS02195 -4.0 -6.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS03110 -4.0 -9.2 glycosyltransferase family 2 protein compare
MMP_RS01795 -4.0 -2.7 methanogenesis marker 6 protein compare
MMP_RS05290 -3.9 -9.0 TetR/AcrR family transcriptional regulator compare
MMP_RS05090 -3.9 -14.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS05100 -3.8 -27.2 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS03400 -3.8 -3.5 archease compare
MMP_RS07200 -3.8 -9.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS07090 -3.8 -10.8 tRNA (adenine-N1)-methyltransferase compare
MMP_RS09020 -3.8 -2.5 hypothetical protein compare
MMP_RS07380 -3.7 -3.9 transcription elongation factor Spt5 compare
MMP_RS05080 -3.7 -21.0 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05085 -3.6 -15.8 AAA family ATPase compare
MMP_RS05075 -3.6 -21.1 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS05555 -3.6 -2.0 DUF4040 domain-containing protein compare
MMP_RS07605 -3.6 -4.2 diadenylate cyclase compare
MMP_RS07330 -3.5 -19.1 membrane protein compare
MMP_RS08790 -3.5 -3.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS00300 -3.5 -1.4 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS08435 -3.5 -4.4 Era-like GTP-binding protein compare
MMP_RS07735 -3.5 -1.1 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08820 -3.5 -10.0 hypothetical protein compare
MMP_RS06625 -3.5 -3.8 DNA primase compare
MMP_RS05425 -3.5 -7.9 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS01985 -3.4 -10.9 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01325 -3.4 -2.8 dihydroneopterin aldolase family protein compare
MMP_RS00515 -3.3 -1.5 DUF655 domain-containing protein compare
MMP_RS07445 -3.3 -4.9 helix-turn-helix domain-containing protein compare
MMP_RS03390 -3.3 -11.1 malate dehydrogenase compare
MMP_RS07820 -3.3 -7.5 UPF0104 family protein compare
MMP_RS07580 -3.3 -3.5 DUF356 domain-containing protein compare
MMP_RS00695 -3.2 -1.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05060 -3.2 -16.2 AAA family ATPase compare
MMP_RS08210 -3.1 -2.7 phosphatidylglycerophosphatase A compare
MMP_RS00455 -3.1 -10.7 orotate phosphoribosyltransferase-like protein compare
MMP_RS05550 -3.1 -1.2 cation:proton antiporter compare
MMP_RS06120 -3.1 -3.6 UPF0147 family protein compare
MMP_RS05070 -3.0 -7.3 4Fe-4S dicluster domain-containing protein compare
MMP_RS05250 -3.0 -2.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS01955 -3.0 -3.8 hypothetical protein compare
MMP_RS03155 -3.0 -12.5 precorrin-6A reductase compare
MMP_RS07005 -2.9 -1.3 4Fe-4S binding protein compare
MMP_RS05440 -2.9 -11.7 winged helix-turn-helix transcriptional regulator compare
MMP_RS05875 -2.9 -7.3 hydroxyethylthiazole kinase compare
MMP_RS01975 -2.9 -13.6 hypothetical protein compare
MMP_RS06315 -2.8 -1.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS05055 -2.8 -15.8 DUF166 domain-containing protein compare
MMP_RS01220 -2.8 -9.7 hypothetical protein compare
MMP_RS07795 -2.8 -15.2 site-2 protease family protein compare
MMP_RS01365 -2.7 -3.0 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS01020 -2.7 -1.7 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS00290 -2.7 -10.2 hypothetical protein compare
MMP_RS01925 -2.6 -7.7 DUF1616 domain-containing protein compare
MMP_RS05345 -2.6 -7.3 hypothetical protein compare
MMP_RS07075 -2.6 -3.8 phosphomannomutase/phosphoglucomutase compare
MMP_RS01940 -2.6 -5.5 MoxR family ATPase compare
MMP_RS06670 -2.6 -7.5 glucose-6-phosphate isomerase compare
MMP_RS00110 -2.5 -5.0 hypothetical protein compare
MMP_RS02875 -2.5 -12.5 chorismate pyruvate-lyase family protein compare
MMP_RS01900 -2.5 -12.6 hypothetical protein compare
MMP_RS02800 -2.5 -7.6 nucleotidyltransferase domain-containing protein compare
MMP_RS07545 -2.5 -1.7 HTH domain-containing protein compare
MMP_RS05640 -2.5 -5.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS01890 -2.5 -5.3 nucleotide sugar dehydrogenase compare
MMP_RS08330 -2.5 -7.2 NADH-quinone oxidoreductase subunit H compare
MMP_RS05920 -2.5 -1.2 50S ribosomal protein L37e compare
MMP_RS08645 -2.4 -10.7 UPF0179 family protein compare
MMP_RS00450 -2.4 -3.2 4Fe-4S binding protein compare
MMP_RS04090 -2.4 -4.3 hypothetical protein compare
MMP_RS00720 -2.4 -11.7 metal-dependent hydrolase compare
MMP_RS07600 -2.4 -2.7 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS07420 -2.4 -3.7 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01915 -2.3 -8.3 DUF354 domain-containing protein compare
MMP_RS01945 -2.3 -9.5 DUF4350 domain-containing protein compare
MMP_RS01935 -2.2 -13.5 DUF58 domain-containing protein compare
MMP_RS01725 -2.2 -5.3 class I SAM-dependent methyltransferase family protein compare
MMP_RS01265 -2.2 -2.5 hypothetical protein compare
MMP_RS03485 -2.2 -6.4 TIGR00267 family protein compare
MMP_RS05505 -2.2 -10.7 class IV adenylate cyclase compare
MMP_RS05925 -2.1 -3.8 small nuclear ribonucleoprotein compare
MMP_RS01895 -2.1 -11.5 flippase compare
MMP_RS08600 -2.1 -3.6 flagellar protein D compare
MMP_RS00985 -2.1 -6.3 CDC48 family AAA ATPase compare
MMP_RS02085 -2.0 -10.9 inosine/xanthosine triphosphatase compare
MMP_RS01930 -2.0 -13.8 hypothetical protein compare
MMP_RS07555 -2.0 -1.0 monovalent cation/H+ antiporter subunit E compare
MMP_RS06105 -2.0 -9.8 hydrogenase maturation peptidase HycI compare
MMP_RS07710 -2.0 -8.5 cell division protein FtsZ compare
MMP_RS02340 -2.0 -2.6 DNA-directed RNA polymerase subunit E'' compare
MMP_RS01960 -2.0 -0.6 hypothetical protein compare
MMP_RS08320 -2.0 -5.7 molybdopterin molybdotransferase MoeA compare
MMP_RS01910 -2.0 -11.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS02355 -2.0 -4.7 30S ribosomal protein S27ae compare
MMP_RS01385 -2.0 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08595 -2.0 -1.7 flagellar protein C compare
MMP_RS03475 -1.9 -1.0 hypothetical protein compare
MMP_RS01885 -1.9 -8.8 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS08590 -1.8 -6.6 flagellin compare
MMP_RS06215 -1.8 -4.6 30S ribosomal protein S6e compare
MMP_RS04875 -1.8 -6.0 energy-converting hydrogenase B subunit P compare
MMP_RS06885 -1.8 -4.4 50S ribosome-binding GTPase compare
MMP_RS05065 -1.8 -6.2 CooT family nickel-binding protein compare
MMP_RS03020 -1.8 -4.2 peptidylprolyl isomerase compare
MMP_RS05635 -1.8 -10.1 NAD-dependent epimerase/dehydratase family protein compare
MMP_RS07575 -1.8 -3.8 RNA ligase partner protein compare
MMP_RS06475 -1.8 -6.7 FAD-dependent oxidoreductase compare
MMP_RS08605 -1.8 -7.0 flagellar protein E compare
MMP_RS05430 -1.8 -1.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS08840 -1.7 -9.1 class I SAM-dependent methyltransferase compare
MMP_RS05540 -1.7 -2.0 hypothetical protein compare
MMP_RS06130 -1.7 -3.8 peptidylprolyl isomerase compare
MMP_RS05765 -1.7 -8.9 M42 family metallopeptidase compare
MMP_RS05815 -1.6 -5.8 NOL1/NOP2/sun family putative RNA methylase compare


Specific Phenotypes

For 4 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis S2

For nutrient t2 Sodium acetate across organisms