Experiment set2IT039 for Ralstonia sp. UNC404CL21Col

Compare to:

1,2-Propanediol carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13250 -6.4 -4.6 phosphoserine phosphatase SerB compare
ABZR87_RS14535 -6.1 -6.0 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS01810 -6.0 -5.6 glutamate 5-kinase compare
ABZR87_RS14500 -5.9 -15.8 tryptophan synthase subunit beta compare
ABZR87_RS06770 -5.8 -11.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS09445 -5.7 -16.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02640 -5.5 -17.1 diaminopimelate decarboxylase compare
ABZR87_RS14540 -5.5 -10.0 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS13790 -5.5 -14.2 chorismate synthase compare
ABZR87_RS02160 -5.4 -9.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS00200 -5.4 -6.4 phosphoadenylyl-sulfate reductase compare
ABZR87_RS07380 -5.3 -15.8 FAD/FMN-binding oxidoreductase compare
ABZR87_RS14490 -5.3 -11.4 tryptophan synthase subunit alpha compare
ABZR87_RS07360 -5.2 -16.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS08625 -5.1 -5.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02590 -5.0 -14.4 3-dehydroquinate synthase compare
ABZR87_RS05590 -5.0 -4.9 orotate phosphoribosyltransferase compare
ABZR87_RS05200 -5.0 -19.2 homoserine O-acetyltransferase compare
ABZR87_RS16170 -5.0 -7.7 argininosuccinate lyase compare
ABZR87_RS00835 -5.0 -5.9 argininosuccinate synthase compare
ABZR87_RS00210 -5.0 -10.1 nitrite/sulfite reductase compare
ABZR87_RS01110 -4.9 -10.5 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS22970 -4.8 -13.0 cystathionine gamma-synthase family protein compare
ABZR87_RS00190 -4.8 -14.0 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS09450 -4.7 -10.6 prephenate dehydratase compare
ABZR87_RS09465 -4.7 -10.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS02595 -4.7 -10.4 shikimate kinase compare
ABZR87_RS02155 -4.6 -9.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS14530 -4.5 -11.7 3-isopropylmalate dehydrogenase compare
ABZR87_RS07510 -4.4 -6.0 LysR family transcriptional regulator compare
ABZR87_RS05170 -4.4 -4.3 acetylglutamate kinase compare
ABZR87_RS04865 -4.4 -6.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS09935 -4.4 -6.0 amino acid aminotransferase compare
ABZR87_RS14505 -4.3 -7.5 phosphoribosylanthranilate isomerase compare
ABZR87_RS01605 -4.3 -11.3 shikimate dehydrogenase compare
ABZR87_RS15110 -4.3 -15.1 NADP-dependent malic enzyme compare
ABZR87_RS11440 -4.2 -9.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS01645 -4.1 -7.0 type II 3-dehydroquinate dehydratase compare
ABZR87_RS14950 -4.0 -4.4 acetolactate synthase small subunit compare
ABZR87_RS06495 -4.0 -3.9 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS08630 -3.9 -13.4 dihydroorotase compare
ABZR87_RS02145 -3.7 -3.2 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14955 -3.5 -4.8 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS00285 -3.5 -2.4 acetylornithine transaminase compare
ABZR87_RS05025 -3.5 -3.3 rod shape-determining protein MreC compare
ABZR87_RS10240 -3.4 -3.3 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS09460 -3.3 -5.6 prephenate dehydrogenase compare
ABZR87_RS11925 -3.3 -14.4 phosphoenolpyruvate synthase compare
ABZR87_RS05100 -3.3 -8.4 RNA polymerase-binding protein DksA compare
ABZR87_RS09515 -3.2 -3.1 cysteine synthase CysM compare
ABZR87_RS09500 -3.2 -5.2 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS00185 -3.1 -5.5 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS05015 -3.0 -6.1 penicillin-binding protein 2 compare
ABZR87_RS00220 -3.0 -9.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00325 -3.0 -3.9 peptidylprolyl isomerase compare
ABZR87_RS12790 -2.9 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS13300 -2.9 -11.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS02140 -2.9 -15.4 anthranilate synthase component I compare
ABZR87_RS04785 -2.8 -11.6 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS05010 -2.8 -5.1 rod shape-determining protein RodA compare
ABZR87_RS03075 -2.8 -10.4 AGE family epimerase/isomerase compare
ABZR87_RS10120 -2.8 -2.8 YceD family protein compare
ABZR87_RS00205 -2.8 -5.2 DUF934 domain-containing protein compare
ABZR87_RS10820 -2.8 -9.5 LysR substrate-binding domain-containing protein compare
ABZR87_RS01285 -2.7 -2.2 preprotein translocase subunit YajC compare
ABZR87_RS00195 -2.6 -5.4 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS07735 -2.5 -5.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS14380 -2.4 -6.2 glutamate racemase compare
ABZR87_RS09895 -2.4 -1.6 DUF1841 family protein compare
ABZR87_RS02480 -2.2 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS11125 -2.2 -7.6 cell division protein ZapE compare
ABZR87_RS16180 -2.2 -4.3 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS13290 -2.1 -8.7 3-ketoacyl-ACP reductase compare
ABZR87_RS10620 -2.1 -3.0 serine O-acetyltransferase compare
ABZR87_RS15715 -2.0 -9.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS07705 -2.0 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS07050 -2.0 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS08750 -1.9 -4.5 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS07530 -1.9 -10.0 glutamate/aspartate ABC transporter permease GltK compare
ABZR87_RS08655 -1.8 -5.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS12795 -1.8 -6.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS07525 -1.8 -10.8 amino acid ABC transporter permease compare
ABZR87_RS14115 -1.8 -6.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS10785 -1.7 -6.1 exodeoxyribonuclease V subunit beta compare
ABZR87_RS07520 -1.7 -8.0 glutamate/aspartate ABC transporter substrate-binding protein compare
ABZR87_RS00435 -1.6 -9.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS11940 -1.6 -3.1 SsrA-binding protein SmpB compare
ABZR87_RS01675 -1.6 -2.6 carbohydrate kinase family protein compare
ABZR87_RS09635 -1.6 -2.6 ribosome small subunit-dependent GTPase A compare
ABZR87_RS06715 -1.6 -4.5 PTS sugar transporter subunit IIA compare
ABZR87_RS07535 -1.6 -3.1 amino acid ABC transporter ATP-binding protein compare
ABZR87_RS13175 -1.6 -1.7 tRNA-Leu compare
ABZR87_RS00795 -1.6 -3.4 site-specific tyrosine recombinase XerD compare
ABZR87_RS04125 -1.5 -5.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08700 -1.5 -8.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS09505 -1.5 -6.3 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS10610 -1.5 -2.2 inositol monophosphatase family protein compare
ABZR87_RS00215 -1.5 -4.0 sulfite exporter TauE/SafE family protein compare
ABZR87_RS00875 -1.4 -4.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS08660 -1.4 -6.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS18040 -1.4 -7.3 RNA polymerase sigma factor FliA compare
ABZR87_RS14495 -1.4 -2.5 site-specific DNA-methyltransferase compare
ABZR87_RS00275 -1.3 -6.9 NAD-dependent epimerase/dehydratase family protein compare
ABZR87_RS15405 -1.3 -2.7 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS12785 -1.3 -6.2 endopeptidase La compare
ABZR87_RS16960 -1.3 -4.2 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS01430 -1.3 -9.9 LysR family transcriptional regulator compare
ABZR87_RS14375 -1.2 -2.9 fumarate hydratase compare
ABZR87_RS20495 -1.2 -1.7 hypothetical protein compare
ABZR87_RS15810 -1.2 -3.9 hypothetical protein compare
ABZR87_RS10700 -1.2 -7.0 C40 family peptidase compare
ABZR87_RS13475 -1.2 -5.9 PAS domain S-box protein compare
ABZR87_RS07005 -1.1 -1.4 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS22690 -1.1 -3.7 XRE family transcriptional regulator compare
ABZR87_RS05580 -1.1 -2.3 diaminopimelate epimerase compare
ABZR87_RS00970 -1.1 -1.7 molecular chaperone DnaJ compare
ABZR87_RS17570 -1.1 -3.2 hypothetical protein compare
ABZR87_RS05065 -1.1 -3.0 tyrosine recombinase XerC compare
ABZR87_RS06705 -1.0 -7.7 glutamate--cysteine ligase compare
ABZR87_RS09820 -1.0 -2.2 RidA family protein compare
ABZR87_RS06395 -1.0 -4.9 response regulator compare
ABZR87_RS06645 -1.0 -1.4 TlpA disulfide reductase family protein compare
ABZR87_RS17310 -1.0 -4.1 PadR family transcriptional regulator compare
ABZR87_RS10980 -1.0 -0.9 tRNA-Leu compare
ABZR87_RS01225 -1.0 -2.9 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS15250 -1.0 -5.9 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS07020 -1.0 -7.8 dynamin-like GTPase family protein compare
ABZR87_RS11245 -1.0 -4.0 translational GTPase TypA compare
ABZR87_RS18415 -1.0 -2.1 hypothetical protein compare
ABZR87_RS01565 -1.0 -6.2 NADP-dependent malic enzyme compare
ABZR87_RS16055 -0.9 -5.9 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS08695 -0.9 -6.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS14575 -0.9 -2.8 GntR family transcriptional regulator compare
ABZR87_RS16125 -0.9 -5.5 heme biosynthesis protein HemY compare
ABZR87_RS22300 -0.9 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
ABZR87_RS05140 -0.9 -1.6 ATP-binding protein compare
ABZR87_RS03180 -0.9 -1.2 hypothetical protein compare
ABZR87_RS10400 -0.9 -2.1 hypothetical protein compare
ABZR87_RS07620 -0.9 -2.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS07635 -0.9 -1.9 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS10550 -0.9 -1.4 outer membrane protein assembly factor BamC compare
ABZR87_RS17995 -0.8 -2.3 chemotaxis response regulator CheY compare
ABZR87_RS16185 -0.8 -1.3 dCTP deaminase compare
ABZR87_RS17075 -0.8 -4.9 acyl-CoA thioesterase compare
ABZR87_RS23265 -0.8 -2.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS04975 -0.8 -3.6 peptide deformylase compare
ABZR87_RS14510 -0.8 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS04860 -0.8 -2.6 phage holin family protein compare
ABZR87_RS10170 -0.8 -4.3 RseA family anti-sigma factor compare
ABZR87_RS02150 -0.8 -1.5 lysozyme inhibitor LprI family protein compare
ABZR87_RS10780 -0.8 -2.7 PD-(D/E)XK nuclease family protein compare
ABZR87_RS10085 -0.8 -2.0 Rne/Rng family ribonuclease compare
ABZR87_RS03930 -0.8 -0.9 glycine cleavage system protein GcvH compare
ABZR87_RS14090 -0.8 -3.3 phosphate ABC transporter permease PstA compare
ABZR87_RS06845 -0.8 -4.9 heme o synthase compare
ABZR87_RS08650 -0.8 -5.5 dTDP-4-dehydrorhamnose reductase compare
ABZR87_RS20500 -0.8 -1.1 hypothetical protein compare
ABZR87_RS15440 -0.8 -1.6 ribonuclease G compare
ABZR87_RS22330 -0.8 -2.3 hypothetical protein compare
ABZR87_RS02850 -0.8 -2.8 elongation factor Tu compare
ABZR87_RS08875 -0.7 -2.3 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
ABZR87_RS07565 -0.7 -4.4 OsmC family protein compare
ABZR87_RS22585 -0.7 -1.4 methyl-accepting chemotaxis protein compare
ABZR87_RS07625 -0.7 -1.4 Holliday junction branch migration protein RuvA compare
ABZR87_RS00385 -0.7 -0.8 response regulator transcription factor compare
ABZR87_RS21285 -0.7 -2.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS10565 -0.7 -2.3 cupin domain-containing protein compare
ABZR87_RS15010 -0.7 -1.6 DUF924 family protein compare
ABZR87_RS10175 -0.7 -3.9 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS08040 -0.7 -3.5 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS15065 -0.7 -2.7 TMEM165/GDT1 family protein compare
ABZR87_RS15240 -0.7 -1.6 YicC/YloC family endoribonuclease compare
ABZR87_RS16735 -0.7 -6.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS00830 -0.7 -1.5 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS14085 -0.7 -3.7 phosphate ABC transporter ATP-binding protein PstB compare
ABZR87_RS13415 -0.7 -3.3 IclR family transcriptional regulator compare
ABZR87_RS15665 -0.7 -3.4 ZIP family metal transporter compare
ABZR87_RS16885 -0.7 -1.5 hypothetical protein compare
ABZR87_RS10195 -0.6 -2.1 signal peptidase I compare
ABZR87_RS04500 -0.6 -1.1 hypothetical protein compare
ABZR87_RS20370 -0.6 -0.8 ABC transporter ATP-binding protein compare
ABZR87_RS08970 -0.6 -3.2 protein TolQ compare
ABZR87_RS20680 -0.6 -1.9 SDR family oxidoreductase compare
ABZR87_RS04945 -0.6 -2.4 DUF4390 domain-containing protein compare
ABZR87_RS15225 -0.6 -2.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS10190 -0.6 -4.0 translation elongation factor 4 compare
ABZR87_RS08235 -0.6 -0.9 hypothetical protein compare
ABZR87_RS09415 -0.6 -3.5 HAD-IA family hydrolase compare
ABZR87_RS00390 -0.6 -4.3 hybrid sensor histidine kinase/response regulator compare
ABZR87_RS07430 -0.6 -1.4 FmdB family zinc ribbon protein compare
ABZR87_RS00360 -0.6 -1.1 acyl-CoA desaturase compare
ABZR87_RS16985 -0.6 -2.3 DJ-1/PfpI family protein compare
ABZR87_RS11170 -0.6 -0.8 FixH family protein compare
ABZR87_RS14235 -0.6 -3.2 formyltetrahydrofolate deformylase compare
ABZR87_RS04940 -0.6 -3.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS20555 -0.6 -2.9 helix-turn-helix transcriptional regulator compare
ABZR87_RS18410 -0.6 -2.4 hypothetical protein compare
ABZR87_RS15815 -0.5 -2.5 ABC transporter substrate-binding protein compare
ABZR87_RS07760 -0.5 -1.1 HlyC/CorC family transporter compare
ABZR87_RS01980 -0.5 -1.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source 1,2-Propanediol in Ralstonia sp. UNC404CL21Col

For carbon source 1,2-Propanediol across organisms