Experiment set2IT039 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Cytosine

200 most important genes:

  gene name fitness t score description  
BBR_RS18695 -7.8 -5.4 PRD domain-containing protein compare
BBR_RS11205 -7.5 -5.2 HPr family phosphocarrier protein compare
BBR_RS11210 -7.3 -10.0 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS11020 -6.4 -8.8 ACT domain-containing protein compare
BBR_RS16820 -6.4 -4.4 RNA polymerase sigma factor RpoE compare
BBR_RS12900 -6.2 -4.1 DeoR/GlpR transcriptional regulator compare
BBR_RS11025 -6.2 -16.1 aspartate-semialdehyde dehydrogenase compare
BBR_RS13820 -6.1 -2.1 ATP-binding protein compare
BBR_RS11015 -6.1 -11.7 aspartate kinase compare
BBR_RS12235 -6.0 -2.0 hypothetical protein compare
BBR_RS11720 -5.9 -9.0 DUF2469 domain-containing protein compare
BBR_RS17375 -5.8 -7.0 amino acid ABC transporter ATP-binding protein compare
BBR_RS18570 -5.8 -8.8 phosphoserine transaminase compare
BBR_RS18955 -5.7 -15.2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS19535 -5.7 -14.2 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS10445 -5.7 -10.2 HlyC/CorC family transporter compare
BBR_RS13040 -5.6 -3.9 CHAP domain-containing protein compare
BBR_RS17365 -5.6 -5.4 ABC transporter permease compare
BBR_RS10620 -5.6 -6.6 phosphoprotein phosphatase compare
BBR_RS14210 -5.5 -3.8 hypothetical protein compare
BBR_RS18735 -5.5 -20.1 hypothetical protein compare
BBR_RS17615 -5.5 -11.1 phosphoserine phosphatase SerB compare
BBR_RS14215 -5.4 -5.3 peptidase compare
BBR_RS17370 -5.4 -9.7 ABC transporter substrate-binding protein compare
BBR_RS17990 -5.4 -15.2 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS15680 -5.3 -7.2 succinate--CoA ligase subunit alpha compare
BBR_RS19475 -5.2 -24.1 AEC family transporter compare
BBR_RS16970 -5.1 -6.1 phosphoglycerate dehydrogenase compare
BBR_RS14365 -5.1 -7.7 hypothetical protein compare
BBR_RS18690 -5.0 -9.0 diacylglycerol kinase compare
BBR_RS10660 -5.0 -24.0 esterase compare
BBR_RS10625 -5.0 -4.2 FHA domain-containing protein compare
BBR_RS14070 -4.9 -3.4 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS17460 -4.9 -9.3 TPM domain-containing protein compare
BBR_RS19760 -4.8 -3.2 polysaccharide ABC transporter ATPase compare
BBR_RS12995 -4.8 -10.5 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS15675 -4.7 -7.9 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS19240 -4.7 -17.6 LacI family transcriptional regulator compare
BBR_RS19740 -4.7 -24.8 DUF2142 domain-containing protein compare
BBR_RS13035 -4.6 -3.2 ABC transporter permease compare
BBR_RS12545 -4.6 -7.0 DUF4012 domain-containing protein compare
BBR_RS15170 -4.5 -6.9 HlyC/CorC family transporter compare
BBR_RS13030 -4.5 -4.4 cell division ATP-binding protein FtsE compare
BBR_RS16675 -4.5 -3.1 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS11540 -4.4 -3.3 DUF1727 domain-containing protein compare
BBR_RS15070 -4.3 -4.2 endolytic transglycosylase MltG compare
BBR_RS14370 -4.3 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS16155 -4.1 -10.6 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS15080 -4.0 -2.7 chorismate synthase compare
BBR_RS18745 -3.8 -2.5 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15520 -3.8 -2.6 shikimate 5-dehydrogenase compare
BBR_RS16600 -3.8 -13.2 aconitate hydratase AcnA compare
BBR_RS16430 -3.8 -3.8 nucleotide pyrophosphatase compare
BBR_RS17905 -3.7 -28.6 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS16670 -3.7 -4.7 hypothetical protein compare
BBR_RS12460 -3.6 -9.5 LacI family DNA-binding transcriptional regulator compare
BBR_RS16555 -3.6 -1.2 DNA translocase FtsK compare
BBR_RS19120 -3.5 -13.5 helicase compare
BBR_RS19700 -3.5 -26.2 ATP-dependent chaperone ClpB compare
BBR_RS15085 -3.5 -2.0 3-dehydroquinate synthase compare
BBR_RS13070 -3.5 -1.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS19555 -3.5 -24.9 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS14660 -3.5 -3.7 transcriptional regulator compare
BBR_RS19355 -3.4 -2.4 tRNA-Gly compare
BBR_RS16750 -3.4 -4.7 ParA family protein compare
BBR_RS16080 -3.4 -3.5 DUF1287 domain-containing protein compare
BBR_RS20465 -3.4 -10.6 chromosome partitioning protein compare
BBR_RS17290 -3.4 -8.8 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS11515 -3.3 -18.6 ammonium transporter compare
BBR_RS19470 -3.3 -20.8 succinyl-diaminopimelate desuccinylase compare
BBR_RS12660 -3.3 -11.4 EpsG family protein compare
BBR_RS14625 -3.2 -8.3 pyrroline-5-carboxylate reductase compare
BBR_RS19190 -3.1 -8.7 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS14540 -3.1 -4.7 Na+/H+ antiporter NhaA compare
BBR_RS20920 -3.1 -4.3 hypothetical protein compare
BBR_RS13770 -3.1 -3.6 DNA repair protein RecO compare
BBR_RS15180 -3.1 -9.6 long-chain fatty acid--CoA ligase compare
BBR_RS13700 -3.0 -12.8 diaminopimelate epimerase compare
BBR_RS16220 -2.9 -1.0 DNA cytosine methyltransferase compare
BBR_RS18700 -2.9 -5.3 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS19945 -2.9 -10.4 MarR family transcriptional regulator compare
BBR_RS17360 -2.8 -5.2 amino acid ABC transporter permease compare
BBR_RS19160 -2.7 -1.8 phosphate ABC transporter permease subunit PstC compare
BBR_RS11680 -2.6 -11.6 23S rRNA methyltransferase compare
BBR_RS16610 -2.6 -4.9 hypothetical protein compare
BBR_RS13740 -2.6 -4.9 DUF3052 domain-containing protein compare
BBR_RS14205 -2.6 -3.6 hypothetical protein compare
BBR_RS11505 -2.6 -14.5 TetR/AcrR family transcriptional regulator compare
BBR_RS16240 -2.5 -4.8 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS13735 -2.5 -1.4 Lon protease compare
BBR_RS16905 -2.5 -4.2 hypothetical protein compare
BBR_RS12760 -2.4 -7.0 hypothetical protein compare
BBR_RS19125 -2.4 -11.2 hypothetical protein compare
BBR_RS14190 -2.4 -9.9 transcriptional regulator compare
BBR_RS12635 -2.4 -15.0 polysaccharide biosynthesis protein compare
BBR_RS19450 -2.4 -1.6 GTPase ObgE compare
BBR_RS12710 -2.4 -4.9 hypothetical protein compare
BBR_RS18555 -2.3 -8.8 NlpC/P60 family protein compare
BBR_RS15370 -2.3 -3.0 macro domain-containing protein compare
BBR_RS15090 -2.3 -1.0 type II 3-dehydroquinate dehydratase compare
BBR_RS19055 -2.3 -1.4 ferredoxin family protein compare
BBR_RS20460 -2.3 -5.5 chromosome partitioning protein ParB compare
BBR_RS12705 -2.3 -10.6 hypothetical protein compare
BBR_RS11470 -2.3 -1.5 6-phosphogluconolactonase compare
BBR_RS12640 -2.3 -11.9 glycosyl transferase compare
BBR_RS13125 -2.2 -1.3 ABC transporter permease compare
BBR_RS16425 -2.2 -3.9 DUF3071 domain-containing protein compare
BBR_RS19540 -2.2 -2.6 homoserine dehydrogenase compare
BBR_RS10755 -2.2 -6.4 adenylosuccinate synthase compare
BBR_RS19095 -2.1 -10.1 magnesium transporter compare
BBR_RS20930 -2.1 -2.4 hypothetical protein compare
BBR_RS11500 -2.1 -11.9 glycosyltransferase family 2 protein compare
BBR_RS11770 -2.1 -4.2 chorismate mutase compare
BBR_RS20430 -2.1 -5.2 hypothetical protein compare
BBR_RS14885 -2.1 -4.2 cyclomaltodextrinase compare
BBR_RS15805 -2.0 -5.2 prolipoprotein diacylglyceryl transferase compare
BBR_RS19905 -2.0 -1.2 methionine--tRNA ligase compare
BBR_RS12905 -2.0 -2.6 galactose-1-phosphate uridylyltransferase compare
BBR_RS16150 -2.0 -6.1 GuaB3 family IMP dehydrogenase-related protein compare
BBR_RS11675 -2.0 -2.0 hypothetical protein compare
BBR_RS19155 -2.0 -6.0 phosphate ABC transporter, permease protein PstA compare
BBR_RS15300 -2.0 -4.6 peroxiredoxin compare
BBR_RS17135 -2.0 -1.2 RluA family pseudouridine synthase compare
BBR_RS16540 -2.0 -3.3 XRE family transcriptional regulator compare
BBR_RS10615 -1.9 -4.2 FtsW/RodA/SpoVE family cell cycle protein compare
BBR_RS14240 -1.9 -5.6 1,4-alpha-glucan branching protein GlgB compare
BBR_RS20775 -1.9 -1.7 DUF4230 domain-containing protein compare
BBR_RS11715 -1.9 -12.4 N-acetyltransferase compare
BBR_RS12375 -1.9 -1.2 pantetheine-phosphate adenylyltransferase compare
BBR_RS12175 -1.9 -7.9 TetR/AcrR family transcriptional regulator compare
BBR_RS13910 -1.9 -1.6 arginine repressor compare
BBR_RS20795 -1.9 -2.0 cystathionine gamma-lyase compare
BBR_RS12645 -1.9 -5.5 acyltransferase compare
BBR_RS16275 -1.9 -1.3 leucine--tRNA ligase compare
BBR_RS16965 -1.9 -1.3 ATP-dependent DNA helicase compare
BBR_RS12630 -1.9 -11.8 glycosyltransferase family 1 protein compare
BBR_RS15670 -1.9 -3.2 adenine phosphoribosyltransferase compare
BBR_RS14665 -1.9 -5.3 MATE family efflux transporter compare
BBR_RS15915 -1.9 -0.9 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS10740 -1.8 -2.1 tRNA-Gly compare
BBR_RS18725 -1.8 -3.7 ribonuclease HI compare
BBR_RS12810 -1.8 -8.3 hypothetical protein compare
BBR_RS17495 -1.8 -8.2 DUF58 domain-containing protein compare
BBR_RS20455 -1.8 -7.5 thioredoxin-disulfide reductase compare
BBR_RS16445 -1.8 -4.4 hypothetical protein compare
BBR_RS17510 -1.8 -6.6 VWA domain-containing protein compare
BBR_RS20935 -1.8 -2.2 hypothetical protein compare
BBR_RS20420 -1.8 -8.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS12980 -1.7 -11.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13420 -1.7 -2.8 DUF4230 domain-containing protein compare
BBR_RS19165 -1.7 -1.9 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS10555 -1.7 -1.7 DUF3073 domain-containing protein compare
BBR_RS12650 -1.7 -9.6 polysaccharide pyruvyl transferase family protein compare
BBR_RS11355 -1.7 -5.7 hypothetical protein compare
BBR_RS18215 -1.7 -6.4 AI-2E family transporter compare
BBR_RS19050 -1.7 -12.7 succinyldiaminopimelate transaminase compare
BBR_RS20450 -1.7 -11.4 murein biosynthesis integral membrane protein MurJ compare
BBR_RS15755 -1.7 -2.1 hypothetical protein compare
BBR_RS12975 -1.7 -9.3 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS17505 -1.7 -8.1 VWA domain-containing protein compare
BBR_RS17500 -1.6 -6.3 hypothetical protein compare
BBR_RS18375 -1.6 -8.5 ATP-dependent helicase compare
BBR_RS19350 -1.6 -2.3 tRNA-Val compare
BBR_RS10900 -1.6 -1.1 molecular chaperone DnaK compare
BBR_RS14775 -1.6 -4.1 hypothetical protein compare
BBR_RS19645 -1.6 -6.1 RNA degradosome polyphosphate kinase compare
BBR_RS19270 -1.6 -1.0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase compare
BBR_RS17515 -1.6 -5.8 hypothetical protein compare
BBR_RS17455 -1.5 -7.2 DNA-binding response regulator compare
BBR_RS14655 -1.5 -4.0 AraC family transcriptional regulator compare
BBR_RS18050 -1.5 -2.5 threonylcarbamoyl-AMP synthase compare
BBR_RS12835 -1.5 -3.6 thioredoxin compare
BBR_RS12700 -1.5 -7.4 hypothetical protein compare
BBR_RS14265 -1.5 -4.4 Solute-binding protein of ABC transporter system for metals compare
BBR_RS10905 -1.5 -2.8 nucleotide exchange factor GrpE compare
BBR_RS14330 -1.5 -1.4 glycogen debranching enzyme GlgX compare
BBR_RS12770 -1.4 -3.7 hypothetical protein compare
BBR_RS13510 -1.4 -6.1 LysR family transcriptional regulator compare
BBR_RS16940 -1.4 -2.9 hypothetical protein compare
BBR_RS10910 -1.4 -8.6 molecular chaperone DnaJ compare
BBR_RS13805 -1.4 -1.9 hypothetical protein compare
BBR_RS12775 -1.4 -5.2 hypothetical protein compare
BBR_RS15130 -1.4 -1.8 metal-sulfur cluster assembly factor compare
BBR_RS20705 -1.4 -2.3 hypothetical protein compare
BBR_RS12665 -1.4 -8.2 acyltransferase compare
BBR_RS19680 -1.4 -9.0 uracil phosphoribosyltransferase compare
BBR_RS18565 -1.4 -0.9 CHAP domain-containing protein compare
BBR_RS17865 -1.4 -4.1 MarR family transcriptional regulator compare
BBR_RS17720 -1.4 -7.7 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS12755 -1.3 -9.4 DUF4365 domain-containing protein compare
BBR_RS17490 -1.3 -7.6 MoxR family ATPase compare
BBR_RS17860 -1.3 -9.4 ABC transporter ATP-binding protein compare
BBR_RS15295 -1.3 -3.7 Cof-type HAD-IIB family hydrolase compare
BBR_RS14230 -1.3 -4.8 HAMP domain-containing histidine kinase compare
BBR_RS16400 -1.3 -1.9 hypothetical protein compare
BBR_RS17855 -1.3 -9.5 ABC transporter ATP-binding protein compare
BBR_RS19755 -1.3 -7.7 glycosyl transferase compare
BBR_RS19375 -1.3 -1.3 acyl-CoA carboxylase subunit beta compare
BBR_RS15340 -1.3 -2.1 hypothetical protein compare
BBR_RS18550 -1.3 -5.2 universal stress protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no Cytosine across organisms