Experiment set2IT039 for Shewanella sp. ANA-3

Compare to:

LB with Paraquat dichloride 0.008 mg/ml

Group: stress
Media: LB + Paraquat dichloride (0.008 mg/ml)
Culturing: ANA3_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jake on 5/15/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 923 D1,D2

Specific Phenotypes

For 15 genes in this experiment

For stress Paraquat dichloride in Shewanella sp. ANA-3

For stress Paraquat dichloride across organisms

SEED Subsystems

Subsystem #Specific
Biogenesis of cbb3-type cytochrome c oxidases 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
DNA repair, bacterial MutL-MutS system 1
Experimental tye 1
Heme and Siroheme Biosynthesis 1
Multidrug Resistance Efflux Pumps 1
Terminal cytochrome C oxidases 1
Terminal cytochrome O ubiquinol oxidase 1
Terminal cytochrome oxidases 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
tetrapyrrole biosynthesis II (from glycine) 4 3 1
heme a biosynthesis 4 2 1
tetrapyrrole biosynthesis I (from glutamate) 6 6 1
superpathway of heme b biosynthesis from glycine 8 7 1
superpathway of heme b biosynthesis from glutamate 10 10 1
superpathway of bacteriochlorophyll a biosynthesis 26 6 1
adenosylcobalamin biosynthesis II (aerobic) 33 18 1
adenosylcobalamin biosynthesis I (anaerobic) 36 18 1