Experiment set2IT039 for Shewanella sp. ANA-3
LB with Paraquat dichloride 0.008 mg/ml
Group: stressMedia: LB + Paraquat dichloride (0.008 mg/ml)
Culturing: ANA3_ML1, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jake on 5/15/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 923 D1,D2
Specific Phenotypes
For 15 genes in this experiment
For stress Paraquat dichloride in Shewanella sp. ANA-3
For stress Paraquat dichloride across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Porphyrin and chlorophyll metabolism
- Ubiquinone and menaquinone biosynthesis
- Methionine metabolism
- Tryptophan metabolism
- Riboflavin metabolism
- Terpenoid biosynthesis
- Carotenoid biosynthesis - General
- Biosynthesis of terpenoids and steroids
- mTOR signaling pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
Pathway | #Steps | #Present | #Specific |
---|---|---|---|
tetrapyrrole biosynthesis II (from glycine) | 4 | 3 | 1 |
heme a biosynthesis | 4 | 2 | 1 |
tetrapyrrole biosynthesis I (from glutamate) | 6 | 6 | 1 |
superpathway of heme b biosynthesis from glycine | 8 | 7 | 1 |
superpathway of heme b biosynthesis from glutamate | 10 | 10 | 1 |
superpathway of bacteriochlorophyll a biosynthesis | 26 | 6 | 1 |
adenosylcobalamin biosynthesis II (aerobic) | 33 | 18 | 1 |
adenosylcobalamin biosynthesis I (anaerobic) | 36 | 18 | 1 |