Experiment set2IT038 for Pseudomonas fluorescens FW300-N2E3

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.4 -3.0 O-succinylhomoserine sulfhydrylase compare
AO353_15980 -4.1 -7.8 trehalose PTS system, EII-BC components TreB (from data) conserved
AO353_20540 -4.1 -5.5 aromatic amino acid aminotransferase compare
AO353_08885 -4.0 -13.6 polyphosphate kinase compare
AO353_12090 -3.7 -2.6 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05115 -3.7 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_03425 -3.7 -8.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_07230 -3.7 -11.7 anthranilate synthase compare
AO353_19090 -3.7 -2.5 MarR family transcriptional regulator compare
AO353_12520 -3.6 -8.5 glutamate synthase compare
AO353_08185 -3.6 -7.3 methionine biosynthesis protein MetW compare
AO353_13165 -3.6 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
AO353_12070 -3.6 -6.4 imidazoleglycerol-phosphate dehydratase compare
AO353_12515 -3.6 -17.2 glutamate synthase compare
AO353_11775 -3.6 -5.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_10025 -3.6 -11.4 pyruvate carboxylase subunit B compare
AO353_20625 -3.6 -3.4 3-isopropylmalate dehydratase compare
AO353_10670 -3.6 -6.8 shikimate dehydrogenase compare
AO353_12085 -3.5 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20665 -3.5 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12075 -3.5 -6.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_09720 -3.4 -2.3 hypothetical protein compare
AO353_15985 -3.4 -5.2 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
AO353_15995 -3.4 -9.0 trehalose-specific PTS system, I, HPr, and IIA components (from data) conserved
AO353_20635 -3.4 -9.3 3-isopropylmalate dehydrogenase compare
AO353_07220 -3.4 -7.2 anthranilate synthase compare
AO353_08345 -3.3 -7.1 dihydroxy-acid dehydratase compare
AO353_08475 -3.3 -7.6 phosphoserine phosphatase compare
AO353_03415 -3.3 -5.4 glucokinase compare
AO353_02075 -3.3 -8.6 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_08180 -3.2 -10.6 homoserine O-acetyltransferase compare
AO353_08685 -3.2 -6.9 N-acetylglutamate synthase compare
AO353_14505 -3.2 -10.1 ketol-acid reductoisomerase compare
AO353_02070 -3.2 -6.1 prephenate dehydratase compare
AO353_13070 -3.2 -7.9 phosphoserine phosphatase compare
AO353_20620 -3.2 -6.0 isopropylmalate isomerase compare
AO353_19060 -3.2 -3.8 CysB family transcriptional regulator compare
AO353_00310 -3.2 -7.3 transaldolase compare
AO353_07215 -3.2 -5.7 anthranilate phosphoribosyltransferase compare
AO353_03360 -3.1 -7.3 glucose-6-phosphate dehydrogenase compare
AO353_12360 -3.1 -7.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_05110 -3.1 -9.1 histidinol dehydrogenase compare
AO353_10035 -3.1 -9.1 LysR family transcriptional regulator compare
AO353_10030 -3.1 -8.7 pyruvate carboxylase subunit A compare
AO353_07210 -3.1 -5.1 indole-3-glycerol-phosphate synthase compare
AO353_15990 -3.0 -14.0 maltoporin conserved
AO353_14400 -3.0 -2.9 Fis family transcriptional regulator compare
AO353_09040 -3.0 -2.1 diaminopimelate epimerase compare
AO353_20175 -3.0 -2.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_12365 -3.0 -4.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_22800 -3.0 -2.9 sulfite reductase compare
AO353_15925 -2.9 -12.0 2-isopropylmalate synthase compare
AO353_04155 -2.9 -10.5 ornithine carbamoyltransferase compare
AO353_08780 -2.8 -7.9 5-formyltetrahydrofolate cyclo-ligase compare
AO353_12115 -2.8 -1.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08510 -2.8 -4.3 3-phosphoglycerate dehydrogenase compare
AO353_02270 -2.8 -5.8 isochorismatase compare
AO353_02250 -2.7 -4.0 chorismate synthase compare
AO353_08015 -2.7 -6.0 5,10-methylenetetrahydrofolate reductase compare
AO353_03020 -2.7 -6.4 arginine N-succinyltransferase compare
AO353_00750 -2.6 -4.0 GntR family transcriptional regulator compare
AO353_14495 -2.6 -8.7 acetolactate synthase 3 catalytic subunit compare
AO353_06040 -2.6 -3.1 exodeoxyribonuclease V subunit alpha compare
AO353_09240 -2.6 -2.5 acetylglutamate kinase compare
AO353_06495 -2.6 -4.6 gamma-glutamyl phosphate reductase compare
AO353_23495 -2.6 -3.0 SAM-dependent methyltransferase compare
AO353_07155 -2.6 -6.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10710 -2.6 -4.3 tryptophan synthase subunit beta compare
AO353_05075 -2.6 -9.0 adenylylsulfate kinase compare
AO353_07315 -2.6 -2.5 rRNA methyltransferase compare
AO353_08995 -2.5 -11.5 chemotaxis protein CheY compare
AO353_03420 -2.5 -5.5 phosphogluconate dehydratase compare
AO353_20565 -2.5 -2.3 tRNA-Ala compare
AO353_04105 -2.5 -7.5 argininosuccinate synthase compare
AO353_14500 -2.5 -5.9 acetolactate synthase 3 regulatory subunit compare
AO353_02685 -2.4 -4.0 phosphoribosylglycinamide formyltransferase compare
AO353_20510 -2.4 -2.8 amidase compare
AO353_01375 -2.4 -6.2 phosphate acyltransferase compare
AO353_05080 -2.4 -9.4 sulfate adenylyltransferase compare
AO353_14370 -2.4 -6.2 glucose-6-phosphate isomerase compare
AO353_11750 -2.3 -2.7 ATPase compare
AO353_09000 -2.3 -4.6 argininosuccinate lyase compare
AO353_13100 -2.3 -1.6 GTPase RsgA compare
AO353_00650 -2.3 -3.0 cytochrome biogenesis protein compare
AO353_02060 -2.2 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_05105 -2.2 -9.1 histidinol-phosphate aminotransferase compare
AO353_14595 -2.2 -8.4 carbonate dehydratase compare
AO353_08265 -2.2 -4.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_08165 -2.2 -2.9 pyrroline-5-carboxylate reductase compare
AO353_07685 -2.2 -3.6 hypothetical protein compare
AO353_02710 -2.2 -8.7 (p)ppGpp synthetase compare
AO353_03580 -2.2 -3.2 ATP-dependent DNA helicase RuvB compare
AO353_00460 -2.2 -3.2 TetR family transcriptional regulator compare
AO353_24340 -2.1 -2.4 TetR family transcriptional regulator compare
AO353_14115 -2.1 -5.7 gamma-glutamyl kinase compare
AO353_04355 -2.1 -2.0 homoserine dehydrogenase compare
AO353_09265 -2.1 -2.8 hypothetical protein compare
AO353_13160 -2.1 -2.4 membrane protease HflC compare
AO353_07355 -2.0 -3.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_15555 -2.0 -4.4 fumarylacetoacetase compare
AO353_16940 -2.0 -4.7 deoxycytidine triphosphate deaminase compare
AO353_07325 -2.0 -2.3 diadenosine tetraphosphatase compare
AO353_03590 -2.0 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_17750 -1.9 -3.1 transcriptional regulator compare
AO353_10705 -1.9 -3.6 tryptophan synthase subunit alpha compare
AO353_27650 -1.9 -4.5 cell division protein FtsK compare
AO353_02810 -1.9 -6.8 histidine kinase compare
AO353_09285 -1.9 -8.7 reactive intermediate/imine deaminase compare
AO353_18715 -1.9 -2.1 histidine kinase compare
AO353_27685 -1.8 -4.2 cold-shock protein compare
AO353_20800 -1.8 -2.1 hypothetical protein compare
AO353_09890 -1.8 -4.8 phosphate ABC transporter ATP-binding protein compare
AO353_21625 -1.8 -2.3 Fe/S biogenesis protein NfuA compare
AO353_08880 -1.8 -2.4 exopolyphosphatase compare
AO353_26900 -1.8 -4.9 glycerate kinase compare
AO353_08485 -1.8 -10.1 threonine dehydratase compare
AO353_01780 -1.7 -8.6 heat-shock protein Hsp90 compare
AO353_05130 -1.7 -2.0 anti-anti-sigma factor compare
AO353_27680 -1.7 -5.8 ATP-dependent Clp protease adaptor ClpS compare
AO353_00510 -1.7 -5.1 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_03015 -1.7 -4.2 arginine N-succinyltransferase compare
AO353_15250 -1.7 -3.0 cytochrome B compare
AO353_07075 -1.7 -4.1 elongation factor Tu compare
AO353_27710 -1.7 -1.6 DNA repair protein compare
AO353_07495 -1.7 -11.4 acyl-CoA dehydrogenase compare
AO353_13155 -1.6 -3.4 hypothetical protein compare
AO353_14405 -1.6 -9.6 ATPase compare
AO353_11165 -1.6 -7.8 hypothetical protein compare
AO353_11850 -1.6 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_18540 -1.6 -2.4 pseudouridine synthase compare
AO353_29340 -1.6 -3.0 transporter compare
AO353_09050 -1.6 -3.3 recombinase XerC compare
AO353_03290 -1.6 -2.1 peptide deformylase compare
AO353_02040 -1.6 -2.6 integration host factor subunit beta compare
AO353_07525 -1.6 -9.6 biotin synthase compare
AO353_13640 -1.6 -3.3 histidine kinase compare
AO353_03715 -1.6 -2.1 H-NS histone compare
AO353_18450 -1.6 -3.9 hypothetical protein compare
AO353_10455 -1.5 -1.8 tRNA modification GTPase MnmE compare
AO353_14420 -1.5 -3.0 molecular chaperone DnaK compare
AO353_12500 -1.5 -1.8 shikimate kinase compare
AO353_06050 -1.5 -4.6 exodeoxyribonuclease V subunit gamma compare
AO353_00825 -1.5 -2.9 porin compare
AO353_08045 -1.5 -9.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_28425 -1.5 -3.2 TetR family transcriptional regulator compare
AO353_24130 -1.5 -2.6 hypothetical protein compare
AO353_18135 -1.5 -2.4 hypothetical protein compare
AO353_27995 -1.5 -3.9 RpiR family transcriptional regulator compare
AO353_02195 -1.5 -3.8 spermidine synthase compare
AO353_15905 -1.5 -4.9 outer membrane protein assembly factor BamB compare
AO353_00495 -1.4 -2.1 DNA topoisomerase I compare
AO353_02320 -1.4 -4.9 allantoinase compare
AO353_14940 -1.4 -3.1 malate:quinone oxidoreductase compare
AO353_14395 -1.4 -3.6 poly(A) polymerase compare
AO353_06415 -1.4 -3.6 hypothetical protein compare
AO353_01080 -1.4 -6.6 hypothetical protein compare
AO353_07505 -1.4 -6.1 dethiobiotin synthetase compare
AO353_25525 -1.4 -3.8 sugar ABC transporter compare
AO353_07610 -1.4 -1.6 hypothetical protein compare
AO353_09260 -1.3 -4.2 ribonuclease PH compare
AO353_02515 -1.3 -5.0 recombination-associated protein RdgC compare
AO353_10985 -1.3 -2.0 hypothetical protein compare
AO353_07105 -1.3 -1.4 biotin--protein ligase compare
AO353_27735 -1.3 -5.5 isocitrate lyase compare
AO353_22305 -1.3 -2.2 LysR family transcriptional regulator compare
AO353_07520 -1.3 -7.7 8-amino-7-oxononanoate synthase compare
AO353_03235 -1.3 -6.1 glutamate-pyruvate aminotransferase compare
AO353_11730 -1.3 -5.9 glutamate--cysteine ligase compare
AO353_12345 -1.3 -1.9 twin-arginine protein translocation system subunit TatC compare
AO353_00900 -1.3 -5.5 2-methylisocitrate lyase compare
AO353_18505 -1.3 -1.7 translation initiation factor 2 compare
AO353_07510 -1.2 -6.3 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_19360 -1.2 -2.0 peroxiredoxin compare
AO353_22375 -1.2 -2.7 cytochrome c-550 PedF compare
AO353_07195 -1.2 -3.6 peroxiredoxin compare
AO353_04565 -1.2 -3.7 nucleoid-associated protein compare
AO353_03615 -1.2 -2.2 cold-shock protein compare
AO353_11770 -1.2 -1.6 molecular chaperone Hsp33 compare
AO353_12710 -1.2 -1.5 thioredoxin compare
AO353_08895 -1.2 -4.2 hypothetical protein compare
AO353_13245 -1.2 -5.0 hypothetical protein compare
AO353_14775 -1.2 -4.2 hypothetical protein compare
AO353_00515 -1.2 -2.7 hypothetical protein compare
AO353_03630 -1.2 -7.1 porin compare
AO353_03585 -1.2 -2.1 ATP-dependent DNA helicase RuvA compare
AO353_10440 -1.2 -3.5 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_08505 -1.2 -6.5 FAD-linked oxidase compare
AO353_06045 -1.2 -4.5 exodeoxyribonuclease V subunit beta compare
AO353_05325 -1.2 -3.7 GntR family transcriptional regulator compare
AO353_13925 -1.2 -2.0 XRE family transcriptional regulator compare
AO353_21615 -1.2 -6.6 methionine synthase compare
AO353_22860 -1.1 -5.5 cytochrome C oxidase Cbb3 compare
AO353_02975 -1.1 -2.0 aspartate kinase compare
AO353_04055 -1.1 -1.8 methionine--tRNA ligase compare
AO353_18005 -1.1 -3.7 allophanate hydrolase compare
AO353_20370 -1.1 -2.3 MerR family transcriptional regulator compare
AO353_15170 -1.1 -1.9 cytochrome D ubiquinol oxidase subunit III compare
AO353_20200 -1.1 -2.7 peptidylprolyl isomerase compare
AO353_17995 -1.1 -4.3 hypothetical protein compare
AO353_12240 -1.1 -3.4 histidine utilization repressor compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Trehalose dihydrate in Pseudomonas fluorescens FW300-N2E3

For carbon source D-Trehalose dihydrate across organisms